Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 AC025627.3-201ENST00000582078 182 ntBASIC0.87□□□□□ -2.27
ZNF541Q9H0D2 MIR5197-201ENST00000583721 112 ntBASIC0.87□□□□□ -2.27
ZNF541Q9H0D2 MIR8055-201ENST00000610739 97 ntBASIC0.87□□□□□ -2.27
ZNF541Q9H0D2 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.86□□□□□ -2.27
ZNF541Q9H0D2 RNU6-200P-201ENST00000364743 107 ntBASIC0.86□□□□□ -2.27
ZNF541Q9H0D2 Y_RNA.515-201ENST00000384535 112 ntBASIC0.86□□□□□ -2.27
ZNF541Q9H0D2 AC244023.1-201ENST00000426884 112 ntBASIC0.86□□□□□ -2.27
ZNF541Q9H0D2 SEPT7P4-201ENST00000437076 306 ntBASIC0.86□□□□□ -2.27
ZNF541Q9H0D2 RNU7-80P-201ENST00000459562 61 ntBASIC0.86□□□□□ -2.27
ZNF541Q9H0D2 MIR4431-201ENST00000579990 94 ntBASIC0.86□□□□□ -2.27
ZNF541Q9H0D2 AC242498.1-201ENST00000604134 111 ntBASIC0.86□□□□□ -2.27
ZNF541Q9H0D2 RNA5SP347-201ENST00000362445 119 ntBASIC0.85□□□□□ -2.27
ZNF541Q9H0D2 RNA5SP499-201ENST00000363982 119 ntBASIC0.85□□□□□ -2.27
ZNF541Q9H0D2 RNU6-934P-201ENST00000365154 107 ntBASIC0.85□□□□□ -2.27
ZNF541Q9H0D2 RNU6-1292P-201ENST00000383856 107 ntBASIC0.85□□□□□ -2.27
ZNF541Q9H0D2 RNU6-1336P-201ENST00000383886 109 ntBASIC0.85□□□□□ -2.27
ZNF541Q9H0D2 RNU6-1190P-201ENST00000410811 104 ntBASIC0.85□□□□□ -2.27
ZNF541Q9H0D2 AC006461.1-201ENST00000412637 326 ntBASIC0.85□□□□□ -2.27
ZNF541Q9H0D2 AC098934.3-201ENST00000430450 190 ntBASIC0.85□□□□□ -2.27
ZNF541Q9H0D2 RPL39P28-201ENST00000465655 155 ntBASIC0.85□□□□□ -2.27
ZNF541Q9H0D2 RNA5SP255-201ENST00000516370 107 ntBASIC0.85□□□□□ -2.27
ZNF541Q9H0D2 MIR4264-201ENST00000583520 66 ntBASIC0.85□□□□□ -2.27
ZNF541Q9H0D2 AC243829.3-201ENST00000622177 108 ntBASIC0.85□□□□□ -2.27
ZNF541Q9H0D2 MIR6866-201ENST00000638146 69 ntBASIC0.85□□□□□ -2.27
ZNF541Q9H0D2 Y_RNA.168-201ENST00000363740 102 ntBASIC0.84□□□□□ -2.28
ZNF541Q9H0D2 Y_RNA.257-201ENST00000364596 102 ntBASIC0.84□□□□□ -2.28
ZNF541Q9H0D2 RNU1-36P-201ENST00000365130 165 ntBASIC0.84□□□□□ -2.28
ZNF541Q9H0D2 RNU6-35P-201ENST00000384530 107 ntBASIC0.84□□□□□ -2.28
ZNF541Q9H0D2 RNU2-64P-201ENST00000411315 191 ntBASIC0.84□□□□□ -2.28
ZNF541Q9H0D2 MIR2909-201ENST00000617113 69 ntBASIC0.84□□□□□ -2.28
ZNF541Q9H0D2 Y_RNA.454-201ENST00000384224 113 ntBASIC0.83□□□□□ -2.28
ZNF541Q9H0D2 Y_RNA.521-201ENST00000384560 114 ntBASIC0.83□□□□□ -2.28
ZNF541Q9H0D2 MT-TN-201ENST00000387400 73 ntBASIC0.83□□□□□ -2.28
ZNF541Q9H0D2 RNA5SP261-201ENST00000410536 106 ntBASIC0.83□□□□□ -2.28
ZNF541Q9H0D2 RNU7-62P-201ENST00000458856 62 ntBASIC0.83□□□□□ -2.28
ZNF541Q9H0D2 RNU6-1110P-201ENST00000516462 101 ntBASIC0.83□□□□□ -2.28
ZNF541Q9H0D2 SCARNA15-202ENST00000516881 127 ntBASIC0.83□□□□□ -2.28
ZNF541Q9H0D2 IGHVIII-67-2-201ENST00000519849 88 ntBASIC0.83□□□□□ -2.28
ZNF541Q9H0D2 AP002392.1-201ENST00000537692 208 ntBASIC0.83□□□□□ -2.28
ZNF541Q9H0D2 Z97988.1-201ENST00000637697 135 ntBASIC0.83□□□□□ -2.28
ZNF541Q9H0D2 AL596211.1-201ENST00000569873 2277 ntBASIC0.83□□□□□ -2.28
ZNF541Q9H0D2 RNU6-312P-201ENST00000364629 107 ntBASIC0.82□□□□□ -2.28
ZNF541Q9H0D2 RNU6-768P-201ENST00000384683 107 ntBASIC0.82□□□□□ -2.28
ZNF541Q9H0D2 MIR608-201ENST00000384820 100 ntBASIC0.82□□□□□ -2.28
ZNF541Q9H0D2 MIR548I3-201ENST00000408378 149 ntBASIC0.82□□□□□ -2.28
ZNF541Q9H0D2 RNU5E-9P-201ENST00000411164 104 ntBASIC0.82□□□□□ -2.28
ZNF541Q9H0D2 Y_RNA.793-201ENST00000411222 111 ntBASIC0.82□□□□□ -2.28
ZNF541Q9H0D2 snoU13.21-201ENST00000459368 105 ntBASIC0.82□□□□□ -2.28
ZNF541Q9H0D2 RNU7-45P-201ENST00000459460 63 ntBASIC0.82□□□□□ -2.28
ZNF541Q9H0D2 RNU6-977P-201ENST00000516411 103 ntBASIC0.82□□□□□ -2.28
ZNF541Q9H0D2 MIR3152-201ENST00000579801 74 ntBASIC0.82□□□□□ -2.28
ZNF541Q9H0D2 AC072026.1-201ENST00000605023 201 ntBASIC0.82□□□□□ -2.28
ZNF541Q9H0D2 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC0.82□□□□□ -2.28
ZNF541Q9H0D2 AC091932.4-201ENST00000623386 200 ntBASIC0.82□□□□□ -2.28
ZNF541Q9H0D2 AC023934.1-201ENST00000574529 2389 ntBASIC0.82□□□□□ -2.28
ZNF541Q9H0D2 RNU6-580P-201ENST00000365159 107 ntBASIC0.81□□□□□ -2.28
ZNF541Q9H0D2 RNU6-597P-201ENST00000365620 102 ntBASIC0.81□□□□□ -2.28
ZNF541Q9H0D2 MIR624-201ENST00000385217 97 ntBASIC0.81□□□□□ -2.28
ZNF541Q9H0D2 SNORA26.6-201ENST00000391256 115 ntBASIC0.81□□□□□ -2.28
ZNF541Q9H0D2 RNU6-602P-201ENST00000411155 105 ntBASIC0.81□□□□□ -2.28
ZNF541Q9H0D2 PSMC1P5-201ENST00000512850 177 ntBASIC0.81□□□□□ -2.28
ZNF541Q9H0D2 RNU6-861P-201ENST00000516745 106 ntBASIC0.81□□□□□ -2.28
ZNF541Q9H0D2 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.81□□□□□ -2.28
ZNF541Q9H0D2 RNU6-682P-201ENST00000363843 106 ntBASIC0.8□□□□□ -2.28
ZNF541Q9H0D2 SNORA25.7-201ENST00000364375 127 ntBASIC0.8□□□□□ -2.28
ZNF541Q9H0D2 RNU6-1082P-201ENST00000364574 107 ntBASIC0.8□□□□□ -2.28
ZNF541Q9H0D2 SNORA20-201ENST00000384662 132 ntBASIC0.8□□□□□ -2.28
ZNF541Q9H0D2 SNORD99-201ENST00000408612 74 ntBASIC0.8□□□□□ -2.28
ZNF541Q9H0D2 SNORD83.1-201ENST00000411362 77 ntBASIC0.8□□□□□ -2.28
ZNF541Q9H0D2 RNU7-120P-201ENST00000459334 63 ntBASIC0.8□□□□□ -2.28
ZNF541Q9H0D2 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC0.8□□□□□ -2.28
ZNF541Q9H0D2 MIR4771-2-201ENST00000577758 74 ntBASIC0.8□□□□□ -2.28
ZNF541Q9H0D2 MIR4771-1-201ENST00000582617 74 ntBASIC0.8□□□□□ -2.28
ZNF541Q9H0D2 uc_338.6-201ENST00000613544 171 ntBASIC0.8□□□□□ -2.28
ZNF541Q9H0D2 MIR377-201ENST00000362145 69 ntBASIC0.79□□□□□ -2.28
ZNF541Q9H0D2 Y_RNA.240-201ENST00000364469 95 ntBASIC0.79□□□□□ -2.28
ZNF541Q9H0D2 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.79□□□□□ -2.28
ZNF541Q9H0D2 RPL39P25-201ENST00000449384 154 ntBASIC0.79□□□□□ -2.28
ZNF541Q9H0D2 AC004792.1-201ENST00000614523 137 ntBASIC0.79□□□□□ -2.28
ZNF541Q9H0D2 MTND5P32-201ENST00000560711 1802 ntBASIC0.79□□□□□ -2.28
ZNF541Q9H0D2 RNU4-84P-201ENST00000364200 139 ntBASIC0.78□□□□□ -2.28
ZNF541Q9H0D2 RNU6-1335P-201ENST00000365426 107 ntBASIC0.78□□□□□ -2.28
ZNF541Q9H0D2 Y_RNA.785-201ENST00000384290 109 ntBASIC0.78□□□□□ -2.28
ZNF541Q9H0D2 MIR588-201ENST00000384900 83 ntBASIC0.78□□□□□ -2.28
ZNF541Q9H0D2 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.78□□□□□ -2.28
ZNF541Q9H0D2 RPS26P5-201ENST00000418544 335 ntBASIC0.78□□□□□ -2.28
ZNF541Q9H0D2 MTND5P15-201ENST00000434246 349 ntBASIC0.78□□□□□ -2.28
ZNF541Q9H0D2 AC107027.2-201ENST00000512197 115 ntBASIC0.78□□□□□ -2.28
ZNF541Q9H0D2 RNU6-1149P-201ENST00000516810 97 ntBASIC0.78□□□□□ -2.28
ZNF541Q9H0D2 SNORA81.3-201ENST00000517283 198 ntBASIC0.78□□□□□ -2.28
ZNF541Q9H0D2 MIR6740-201ENST00000618268 113 ntBASIC0.78□□□□□ -2.28
ZNF541Q9H0D2 MIR6717-201ENST00000622747 73 ntBASIC0.78□□□□□ -2.28
ZNF541Q9H0D2 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.78□□□□□ -2.29
ZNF541Q9H0D2 RNU6-369P-201ENST00000362515 102 ntBASIC0.77□□□□□ -2.29
ZNF541Q9H0D2 Y_RNA.29-201ENST00000362570 113 ntBASIC0.77□□□□□ -2.29
ZNF541Q9H0D2 MIR520F-201ENST00000384824 87 ntBASIC0.77□□□□□ -2.29
ZNF541Q9H0D2 SNORD105-201ENST00000386910 85 ntBASIC0.77□□□□□ -2.29
ZNF541Q9H0D2 AC092628.1-201ENST00000436250 252 ntBASIC0.77□□□□□ -2.29
ZNF541Q9H0D2 AC113410.1-201ENST00000505029 247 ntBASIC0.77□□□□□ -2.29
ZNF541Q9H0D2 AC074198.2-201ENST00000508153 258 ntBASIC0.77□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 214.7 ms