Protein–RNA interactions for Protein: Q99569

PKP4, Plakophilin-4, humanhuman

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4Q99569 RNU6-913P-201ENST00000390913 95 ntBASIC1.27□□□□□ -2.21
PKP4Q99569 RNA5SP144-201ENST00000410846 116 ntBASIC1.27□□□□□ -2.21
PKP4Q99569 AL022718.1-201ENST00000412004 84 ntBASIC1.27□□□□□ -2.21
PKP4Q99569 RNU7-45P-201ENST00000459460 63 ntBASIC1.27□□□□□ -2.21
PKP4Q99569 AC004223.1-201ENST00000479840 271 ntBASIC1.27□□□□□ -2.21
PKP4Q99569 RN7SKP88-201ENST00000516847 250 ntBASIC1.27□□□□□ -2.21
PKP4Q99569 AC068338.1-201ENST00000565567 176 ntBASIC1.27□□□□□ -2.21
PKP4Q99569 AL020996.3-201ENST00000606617 222 ntBASIC1.27□□□□□ -2.21
PKP4Q99569 GHRLOS.1-201ENST00000610995 70 ntBASIC1.27□□□□□ -2.21
PKP4Q99569 7SK.8-201ENST00000612110 250 ntBASIC1.27□□□□□ -2.21
PKP4Q99569 7SK.11-201ENST00000615477 250 ntBASIC1.27□□□□□ -2.21
PKP4Q99569 7SK.13-201ENST00000622040 250 ntBASIC1.27□□□□□ -2.21
PKP4Q99569 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.26□□□□□ -2.21
PKP4Q99569 SNORA7.1-201ENST00000363750 139 ntBASIC1.26□□□□□ -2.21
PKP4Q99569 Y_RNA.198-201ENST00000364013 98 ntBASIC1.26□□□□□ -2.21
PKP4Q99569 RNU6-215P-201ENST00000365169 102 ntBASIC1.26□□□□□ -2.21
PKP4Q99569 SNORD20-201ENST00000384550 80 ntBASIC1.26□□□□□ -2.21
PKP4Q99569 RNU6-321P-201ENST00000410912 106 ntBASIC1.26□□□□□ -2.21
PKP4Q99569 Y_RNA.649-201ENST00000459077 103 ntBASIC1.26□□□□□ -2.21
PKP4Q99569 TRMT112P2-201ENST00000512910 132 ntBASIC1.26□□□□□ -2.21
PKP4Q99569 RNU7-123P-201ENST00000515911 60 ntBASIC1.26□□□□□ -2.21
PKP4Q99569 RNU7-41P-201ENST00000515917 61 ntBASIC1.26□□□□□ -2.21
PKP4Q99569 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC1.26□□□□□ -2.21
PKP4Q99569 MIR6717-201ENST00000622747 73 ntBASIC1.26□□□□□ -2.21
PKP4Q99569 MIR4251-201ENST00000635819 61 ntBASIC1.26□□□□□ -2.21
PKP4Q99569 RNA5SP48-201ENST00000363969 126 ntBASIC1.25□□□□□ -2.21
PKP4Q99569 RNU6-1325P-201ENST00000364905 105 ntBASIC1.25□□□□□ -2.21
PKP4Q99569 Y_RNA.430-201ENST00000384081 110 ntBASIC1.25□□□□□ -2.21
PKP4Q99569 SNORA26.6-201ENST00000391256 115 ntBASIC1.25□□□□□ -2.21
PKP4Q99569 POLR2J4-204ENST00000418424 324 ntBASIC1.25□□□□□ -2.21
PKP4Q99569 RNU2-35P-201ENST00000516446 142 ntBASIC1.25□□□□□ -2.21
PKP4Q99569 MIR8055-201ENST00000610739 97 ntBASIC1.25□□□□□ -2.21
PKP4Q99569 RNA5SP327-201ENST00000362494 101 ntBASIC1.24□□□□□ -2.21
PKP4Q99569 SNORA22.1-201ENST00000362701 134 ntBASIC1.24□□□□□ -2.21
PKP4Q99569 Y_RNA.164-201ENST00000363709 102 ntBASIC1.24□□□□□ -2.21
PKP4Q99569 Y_RNA.213-201ENST00000364178 111 ntBASIC1.24□□□□□ -2.21
PKP4Q99569 SNORA1.1-201ENST00000364671 133 ntBASIC1.24□□□□□ -2.21
PKP4Q99569 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.24□□□□□ -2.21
PKP4Q99569 MIR759-201ENST00000390224 91 ntBASIC1.24□□□□□ -2.21
PKP4Q99569 SNORA40.6-201ENST00000391153 128 ntBASIC1.24□□□□□ -2.21
PKP4Q99569 RNU6-1190P-201ENST00000410811 104 ntBASIC1.24□□□□□ -2.21
PKP4Q99569 MIR3660-201ENST00000584845 100 ntBASIC1.24□□□□□ -2.21
PKP4Q99569 MIR4781-201ENST00000585250 76 ntBASIC1.24□□□□□ -2.21
PKP4Q99569 MIR6841-201ENST00000637129 72 ntBASIC1.24□□□□□ -2.21
PKP4Q99569 SNORD116-21-201ENST00000384507 92 ntBASIC1.23□□□□□ -2.21
PKP4Q99569 RNU6-429P-201ENST00000384582 108 ntBASIC1.23□□□□□ -2.21
PKP4Q99569 RPS3AP1-201ENST00000413190 320 ntBASIC1.23□□□□□ -2.21
PKP4Q99569 RPL39P39-201ENST00000455840 151 ntBASIC1.23□□□□□ -2.21
PKP4Q99569 RNU6-919P-201ENST00000516731 104 ntBASIC1.23□□□□□ -2.21
PKP4Q99569 IGHVII-40-1-201ENST00000517316 58 ntBASIC1.23□□□□□ -2.21
PKP4Q99569 AC004812.1-201ENST00000540773 146 ntBASIC1.23□□□□□ -2.21
PKP4Q99569 MIR548AO-201ENST00000579992 96 ntBASIC1.23□□□□□ -2.21
PKP4Q99569 AL096861.1-201ENST00000610899 123 ntBASIC1.23□□□□□ -2.21
PKP4Q99569 AL157834.3-201ENST00000615543 103 ntBASIC1.23□□□□□ -2.21
PKP4Q99569 MIR6129-201ENST00000616087 109 ntBASIC1.23□□□□□ -2.21
PKP4Q99569 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.23□□□□□ -2.21
PKP4Q99569 Z97988.1-201ENST00000637697 135 ntBASIC1.23□□□□□ -2.21
PKP4Q99569 Y_RNA.327-201ENST00000365201 102 ntBASIC1.22□□□□□ -2.21
PKP4Q99569 RNU6-880P-201ENST00000384526 107 ntBASIC1.22□□□□□ -2.21
PKP4Q99569 Y_RNA.531-201ENST00000384589 121 ntBASIC1.22□□□□□ -2.21
PKP4Q99569 MIR548A1-201ENST00000385041 97 ntBASIC1.22□□□□□ -2.21
PKP4Q99569 AL512326.2-201ENST00000426359 151 ntBASIC1.22□□□□□ -2.21
PKP4Q99569 HMGN1P33-201ENST00000432945 451 ntBASIC1.22□□□□□ -2.21
PKP4Q99569 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.22□□□□□ -2.21
PKP4Q99569 RNU7-113P-201ENST00000459273 62 ntBASIC1.22□□□□□ -2.21
PKP4Q99569 MIR3192-201ENST00000584920 77 ntBASIC1.22□□□□□ -2.21
PKP4Q99569 SNORD115-2-201ENST00000362842 82 ntBASIC1.21□□□□□ -2.22
PKP4Q99569 RNY4P6-201ENST00000363667 96 ntBASIC1.21□□□□□ -2.22
PKP4Q99569 Y_RNA.171-201ENST00000363760 102 ntBASIC1.21□□□□□ -2.22
PKP4Q99569 SNORD115-20-201ENST00000365099 82 ntBASIC1.21□□□□□ -2.22
PKP4Q99569 Y_RNA.354-201ENST00000365448 111 ntBASIC1.21□□□□□ -2.22
PKP4Q99569 RNU6-1104P-201ENST00000384723 104 ntBASIC1.21□□□□□ -2.22
PKP4Q99569 AL035461.1-201ENST00000421490 332 ntBASIC1.21□□□□□ -2.22
PKP4Q99569 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC1.21□□□□□ -2.22
PKP4Q99569 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.21□□□□□ -2.22
PKP4Q99569 RNU6-947P-201ENST00000516264 106 ntBASIC1.21□□□□□ -2.22
PKP4Q99569 RNU6-589P-201ENST00000516485 107 ntBASIC1.21□□□□□ -2.22
PKP4Q99569 RNU6-1258P-201ENST00000516911 111 ntBASIC1.21□□□□□ -2.22
PKP4Q99569 Y_RNA.709-201ENST00000516952 92 ntBASIC1.21□□□□□ -2.22
PKP4Q99569 AC022523.2-201ENST00000561045 150 ntBASIC1.21□□□□□ -2.22
PKP4Q99569 AC007012.1-201ENST00000567192 175 ntBASIC1.21□□□□□ -2.22
PKP4Q99569 MIR3163-201ENST00000581592 73 ntBASIC1.21□□□□□ -2.22
PKP4Q99569 AL353770.2-201ENST00000620024 78 ntBASIC1.21□□□□□ -2.22
PKP4Q99569 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
PKP4Q99569 Y_RNA.35-201ENST00000362601 101 ntBASIC1.2□□□□□ -2.22
PKP4Q99569 Y_RNA.81-201ENST00000362997 102 ntBASIC1.2□□□□□ -2.22
PKP4Q99569 Y_RNA.299-201ENST00000364973 94 ntBASIC1.2□□□□□ -2.22
PKP4Q99569 MT-TI-201ENST00000387365 69 ntBASIC1.2□□□□□ -2.22
PKP4Q99569 RPS23P4-201ENST00000487908 423 ntBASIC1.2□□□□□ -2.22
PKP4Q99569 AC113410.1-201ENST00000505029 247 ntBASIC1.2□□□□□ -2.22
PKP4Q99569 MIR6078-201ENST00000611069 100 ntBASIC1.2□□□□□ -2.22
PKP4Q99569 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC1.2□□□□□ -2.22
PKP4Q99569 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
PKP4Q99569 RNU1-124P-201ENST00000363861 145 ntBASIC1.19□□□□□ -2.22
PKP4Q99569 SNORD38B-201ENST00000384690 67 ntBASIC1.19□□□□□ -2.22
PKP4Q99569 RNU6-602P-201ENST00000411155 105 ntBASIC1.19□□□□□ -2.22
PKP4Q99569 RNA5SP247-201ENST00000411181 105 ntBASIC1.19□□□□□ -2.22
PKP4Q99569 AL133373.1-201ENST00000497098 94 ntBASIC1.19□□□□□ -2.22
PKP4Q99569 RNU6-165P-201ENST00000517170 99 ntBASIC1.19□□□□□ -2.22
PKP4Q99569 MIR4679-2-201ENST00000578358 77 ntBASIC1.19□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 211.2 ms