Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 SNORA81.3-201ENST00000517283 198 ntBASIC0.86□□□□□ -2.27
PDLIM3Q53GG5 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC0.86□□□□□ -2.27
PDLIM3Q53GG5 AC242498.1-201ENST00000604134 111 ntBASIC0.86□□□□□ -2.27
PDLIM3Q53GG5 AC072026.1-201ENST00000605023 201 ntBASIC0.86□□□□□ -2.27
PDLIM3Q53GG5 AC106800.4-201ENST00000614905 153 ntBASIC0.86□□□□□ -2.27
PDLIM3Q53GG5 AC023934.1-201ENST00000574529 2389 ntBASIC0.85□□□□□ -2.27
PDLIM3Q53GG5 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.85□□□□□ -2.27
PDLIM3Q53GG5 MTND5P32-201ENST00000560711 1802 ntBASIC0.85□□□□□ -2.27
PDLIM3Q53GG5 Y_RNA.29-201ENST00000362570 113 ntBASIC0.85□□□□□ -2.27
PDLIM3Q53GG5 RNU6-1082P-201ENST00000364574 107 ntBASIC0.85□□□□□ -2.27
PDLIM3Q53GG5 RNU6-312P-201ENST00000364629 107 ntBASIC0.85□□□□□ -2.27
PDLIM3Q53GG5 RNU6-1292P-201ENST00000383856 107 ntBASIC0.85□□□□□ -2.27
PDLIM3Q53GG5 Y_RNA.435-201ENST00000384095 112 ntBASIC0.85□□□□□ -2.27
PDLIM3Q53GG5 SNORD12C-201ENST00000386307 89 ntBASIC0.85□□□□□ -2.27
PDLIM3Q53GG5 SNORD111-201ENST00000408139 94 ntBASIC0.85□□□□□ -2.27
PDLIM3Q53GG5 RNU6-588P-201ENST00000410281 105 ntBASIC0.85□□□□□ -2.27
PDLIM3Q53GG5 RNU6-613P-201ENST00000410412 108 ntBASIC0.85□□□□□ -2.27
PDLIM3Q53GG5 AC067940.1-201ENST00000458411 300 ntBASIC0.85□□□□□ -2.27
PDLIM3Q53GG5 RNU7-62P-201ENST00000458856 62 ntBASIC0.85□□□□□ -2.27
PDLIM3Q53GG5 RPL39P28-201ENST00000465655 155 ntBASIC0.85□□□□□ -2.27
PDLIM3Q53GG5 AC074198.2-201ENST00000508153 258 ntBASIC0.85□□□□□ -2.27
PDLIM3Q53GG5 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.85□□□□□ -2.27
PDLIM3Q53GG5 MIR8055-201ENST00000610739 97 ntBASIC0.85□□□□□ -2.27
PDLIM3Q53GG5 MIR6513-201ENST00000621188 64 ntBASIC0.85□□□□□ -2.27
PDLIM3Q53GG5 MIR3658-201ENST00000636291 56 ntBASIC0.85□□□□□ -2.27
PDLIM3Q53GG5 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.85□□□□□ -2.27
PDLIM3Q53GG5 MIR330-201ENST00000362196 94 ntBASIC0.84□□□□□ -2.27
PDLIM3Q53GG5 Y_RNA.337-201ENST00000365312 102 ntBASIC0.84□□□□□ -2.27
PDLIM3Q53GG5 RNU6-1318P-201ENST00000365389 103 ntBASIC0.84□□□□□ -2.27
PDLIM3Q53GG5 RNU6-1335P-201ENST00000365426 107 ntBASIC0.84□□□□□ -2.27
PDLIM3Q53GG5 MIR100-201ENST00000385259 80 ntBASIC0.84□□□□□ -2.27
PDLIM3Q53GG5 RNU6-602P-201ENST00000411155 105 ntBASIC0.84□□□□□ -2.27
PDLIM3Q53GG5 RNU2-64P-201ENST00000411315 191 ntBASIC0.84□□□□□ -2.27
PDLIM3Q53GG5 Y_RNA.662-201ENST00000516028 97 ntBASIC0.84□□□□□ -2.27
PDLIM3Q53GG5 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.84□□□□□ -2.27
PDLIM3Q53GG5 AC004792.1-201ENST00000614523 137 ntBASIC0.84□□□□□ -2.27
PDLIM3Q53GG5 MIR6844-201ENST00000637122 62 ntBASIC0.84□□□□□ -2.27
PDLIM3Q53GG5 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.83□□□□□ -2.28
PDLIM3Q53GG5 Y_RNA.454-201ENST00000384224 113 ntBASIC0.83□□□□□ -2.28
PDLIM3Q53GG5 RNU5E-9P-201ENST00000411164 104 ntBASIC0.83□□□□□ -2.28
PDLIM3Q53GG5 RPS3AP1-201ENST00000413190 320 ntBASIC0.83□□□□□ -2.28
PDLIM3Q53GG5 ACA64.5-201ENST00000516207 127 ntBASIC0.83□□□□□ -2.28
PDLIM3Q53GG5 MIR4771-2-201ENST00000577758 74 ntBASIC0.83□□□□□ -2.28
PDLIM3Q53GG5 MIR4771-1-201ENST00000582617 74 ntBASIC0.83□□□□□ -2.28
PDLIM3Q53GG5 MIR4264-201ENST00000583520 66 ntBASIC0.83□□□□□ -2.28
PDLIM3Q53GG5 AC104465.1-201ENST00000611365 139 ntBASIC0.83□□□□□ -2.28
PDLIM3Q53GG5 MIR6857-201ENST00000613267 93 ntBASIC0.83□□□□□ -2.28
PDLIM3Q53GG5 uc_338.6-201ENST00000613544 171 ntBASIC0.83□□□□□ -2.28
PDLIM3Q53GG5 AC010332.2-201ENST00000613083 1904 ntBASIC0.83□□□□□ -2.28
PDLIM3Q53GG5 RNU6-682P-201ENST00000363843 106 ntBASIC0.82□□□□□ -2.28
PDLIM3Q53GG5 RNU6-818P-201ENST00000364837 108 ntBASIC0.82□□□□□ -2.28
PDLIM3Q53GG5 RNU6-934P-201ENST00000365154 107 ntBASIC0.82□□□□□ -2.28
PDLIM3Q53GG5 RNU6-597P-201ENST00000365620 102 ntBASIC0.82□□□□□ -2.28
PDLIM3Q53GG5 SNORA20-201ENST00000384662 132 ntBASIC0.82□□□□□ -2.28
PDLIM3Q53GG5 MIR588-201ENST00000384900 83 ntBASIC0.82□□□□□ -2.28
PDLIM3Q53GG5 MIR624-201ENST00000385217 97 ntBASIC0.82□□□□□ -2.28
PDLIM3Q53GG5 FABP5P4-201ENST00000437203 171 ntBASIC0.82□□□□□ -2.28
PDLIM3Q53GG5 SNORD114-21-201ENST00000606412 72 ntBASIC0.82□□□□□ -2.28
PDLIM3Q53GG5 MIR6717-201ENST00000622747 73 ntBASIC0.82□□□□□ -2.28
PDLIM3Q53GG5 Z97988.1-201ENST00000637697 135 ntBASIC0.82□□□□□ -2.28
PDLIM3Q53GG5 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.82□□□□□ -2.28
PDLIM3Q53GG5 Y_RNA.8-201ENST00000362353 102 ntBASIC0.81□□□□□ -2.28
PDLIM3Q53GG5 Y_RNA.52-201ENST00000362760 96 ntBASIC0.81□□□□□ -2.28
PDLIM3Q53GG5 Y_RNA.168-201ENST00000363740 102 ntBASIC0.81□□□□□ -2.28
PDLIM3Q53GG5 MIR605-201ENST00000385078 83 ntBASIC0.81□□□□□ -2.28
PDLIM3Q53GG5 MIR936-201ENST00000401264 98 ntBASIC0.81□□□□□ -2.28
PDLIM3Q53GG5 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.81□□□□□ -2.28
PDLIM3Q53GG5 MIR1197-201ENST00000408818 88 ntBASIC0.81□□□□□ -2.28
PDLIM3Q53GG5 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.81□□□□□ -2.28
PDLIM3Q53GG5 RNU7-120P-201ENST00000459334 63 ntBASIC0.81□□□□□ -2.28
PDLIM3Q53GG5 AC113410.1-201ENST00000505029 247 ntBASIC0.81□□□□□ -2.28
PDLIM3Q53GG5 RNU5E-3P-201ENST00000515913 68 ntBASIC0.81□□□□□ -2.28
PDLIM3Q53GG5 SCARNA15-202ENST00000516881 127 ntBASIC0.81□□□□□ -2.28
PDLIM3Q53GG5 MIR4714-201ENST00000580728 77 ntBASIC0.81□□□□□ -2.28
PDLIM3Q53GG5 MIR6740-201ENST00000618268 113 ntBASIC0.81□□□□□ -2.28
PDLIM3Q53GG5 MIR1-1-201ENST00000362147 71 ntBASIC0.8□□□□□ -2.28
PDLIM3Q53GG5 Y_RNA.280-201ENST00000364765 112 ntBASIC0.8□□□□□ -2.28
PDLIM3Q53GG5 RNU6-239P-201ENST00000390990 99 ntBASIC0.8□□□□□ -2.28
PDLIM3Q53GG5 Y_RNA.150-201ENST00000363562 102 ntBASIC0.79□□□□□ -2.28
PDLIM3Q53GG5 RNU4-84P-201ENST00000364200 139 ntBASIC0.79□□□□□ -2.28
PDLIM3Q53GG5 RNU4-38P-201ENST00000364472 129 ntBASIC0.79□□□□□ -2.28
PDLIM3Q53GG5 MT-TN-201ENST00000387400 73 ntBASIC0.79□□□□□ -2.28
PDLIM3Q53GG5 SNORA26.6-201ENST00000391256 115 ntBASIC0.79□□□□□ -2.28
PDLIM3Q53GG5 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.79□□□□□ -2.28
PDLIM3Q53GG5 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.79□□□□□ -2.28
PDLIM3Q53GG5 RNA5SP255-201ENST00000516370 107 ntBASIC0.79□□□□□ -2.28
PDLIM3Q53GG5 RNU6-182P-201ENST00000516970 105 ntBASIC0.79□□□□□ -2.28
PDLIM3Q53GG5 MIR3152-201ENST00000579801 74 ntBASIC0.79□□□□□ -2.28
PDLIM3Q53GG5 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.79□□□□□ -2.28
PDLIM3Q53GG5 AC021613.1-201ENST00000623880 111 ntBASIC0.79□□□□□ -2.28
PDLIM3Q53GG5 RNY1P11-201ENST00000363759 113 ntBASIC0.78□□□□□ -2.28
PDLIM3Q53GG5 Y_RNA.240-201ENST00000364469 95 ntBASIC0.78□□□□□ -2.28
PDLIM3Q53GG5 VTRNA1-3-201ENST00000365645 89 ntBASIC0.78□□□□□ -2.28
PDLIM3Q53GG5 MIR532-201ENST00000385025 91 ntBASIC0.78□□□□□ -2.28
PDLIM3Q53GG5 SNORA75.5-201ENST00000391291 81 ntBASIC0.78□□□□□ -2.28
PDLIM3Q53GG5 RNU6-1165P-201ENST00000410119 107 ntBASIC0.78□□□□□ -2.28
PDLIM3Q53GG5 RNA5SP237-201ENST00000410414 113 ntBASIC0.78□□□□□ -2.28
PDLIM3Q53GG5 RNA5SP261-201ENST00000410536 106 ntBASIC0.78□□□□□ -2.28
PDLIM3Q53GG5 RPL39P25-201ENST00000449384 154 ntBASIC0.78□□□□□ -2.28
PDLIM3Q53GG5 RNU6-977P-201ENST00000516411 103 ntBASIC0.78□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 165.9 ms