Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 MIR4491-201ENST00000581087 68 ntBASIC0.03□□□□□ -2.4
CCDC40Q4G0X9 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC0.02□□□□□ -2.41
CCDC40Q4G0X9 Y_RNA.216-201ENST00000364205 93 ntBASIC0.02□□□□□ -2.41
CCDC40Q4G0X9 Y_RNA.476-201ENST00000384347 108 ntBASIC0.02□□□□□ -2.41
CCDC40Q4G0X9 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.02□□□□□ -2.41
CCDC40Q4G0X9 AC096949.1-201ENST00000412047 152 ntBASIC0.02□□□□□ -2.41
CCDC40Q4G0X9 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.02□□□□□ -2.41
CCDC40Q4G0X9 AC069271.1-201ENST00000445577 156 ntBASIC0.02□□□□□ -2.41
CCDC40Q4G0X9 RNA5SP330-201ENST00000517096 96 ntBASIC0.02□□□□□ -2.41
CCDC40Q4G0X9 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.02□□□□□ -2.41
CCDC40Q4G0X9 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC0.02□□□□□ -2.41
CCDC40Q4G0X9 MIR7107-201ENST00000611489 80 ntBASIC0.02□□□□□ -2.41
CCDC40Q4G0X9 MIR6828-201ENST00000636181 60 ntBASIC0.02□□□□□ -2.41
CCDC40Q4G0X9 MIR6841-201ENST00000637129 72 ntBASIC0.02□□□□□ -2.41
CCDC40Q4G0X9 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.01□□□□□ -2.41
CCDC40Q4G0X9 SNORA20-201ENST00000384662 132 ntBASIC0.01□□□□□ -2.41
CCDC40Q4G0X9 SEPT7P4-201ENST00000437076 306 ntBASIC0.01□□□□□ -2.41
CCDC40Q4G0X9 SUMO1P3-201ENST00000439961 304 ntBASIC0.01□□□□□ -2.41
CCDC40Q4G0X9 RNU6-561P-201ENST00000516222 102 ntBASIC0.01□□□□□ -2.41
CCDC40Q4G0X9 MIR3171-201ENST00000584270 74 ntBASIC0.01□□□□□ -2.41
CCDC40Q4G0X9 MIR6755-201ENST00000619993 66 ntBASIC0.01□□□□□ -2.41
CCDC40Q4G0X9 Y_RNA.82-201ENST00000363000 102 ntBASIC0□□□□□ -2.41
CCDC40Q4G0X9 Y_RNA.92-201ENST00000363043 102 ntBASIC0□□□□□ -2.41
CCDC40Q4G0X9 RNA5SP214-201ENST00000363378 118 ntBASIC0□□□□□ -2.41
CCDC40Q4G0X9 SNORD114-9-201ENST00000364370 72 ntBASIC0□□□□□ -2.41
CCDC40Q4G0X9 Y_RNA.235-201ENST00000364412 102 ntBASIC0□□□□□ -2.41
CCDC40Q4G0X9 Y_RNA.306-201ENST00000365015 102 ntBASIC0□□□□□ -2.41
CCDC40Q4G0X9 Y_RNA.312-201ENST00000365089 102 ntBASIC0□□□□□ -2.41
CCDC40Q4G0X9 Y_RNA.322-201ENST00000365151 102 ntBASIC0□□□□□ -2.41
CCDC40Q4G0X9 Y_RNA.466-201ENST00000384294 113 ntBASIC0□□□□□ -2.41
CCDC40Q4G0X9 SNORA72.6-201ENST00000384520 129 ntBASIC0□□□□□ -2.41
CCDC40Q4G0X9 Y_RNA.650-201ENST00000459002 102 ntBASIC0□□□□□ -2.41
CCDC40Q4G0X9 Y_RNA.777-201ENST00000516982 102 ntBASIC0□□□□□ -2.41
CCDC40Q4G0X9 RNU6-1137P-201ENST00000517073 99 ntBASIC0□□□□□ -2.41
CCDC40Q4G0X9 MIR4667-201ENST00000578933 66 ntBASIC0□□□□□ -2.41
CCDC40Q4G0X9 Y_RNA.771-201ENST00000598668 102 ntBASIC0□□□□□ -2.41
CCDC40Q4G0X9 Y_RNA.789-201ENST00000622480 102 ntBASIC0□□□□□ -2.41
CCDC40Q4G0X9 SNORA9.1-201ENST00000362412 131 ntBASIC-0.01□□□□□ -2.41
CCDC40Q4G0X9 SNORA22.1-201ENST00000362701 134 ntBASIC-0.01□□□□□ -2.41
CCDC40Q4G0X9 RNU6-949P-201ENST00000384040 107 ntBASIC-0.01□□□□□ -2.41
CCDC40Q4G0X9 SNORA79-201ENST00000408376 140 ntBASIC-0.01□□□□□ -2.41
CCDC40Q4G0X9 RNA5SP227-201ENST00000516184 113 ntBASIC-0.01□□□□□ -2.41
CCDC40Q4G0X9 SCARNA16.5-201ENST00000517114 183 ntBASIC-0.01□□□□□ -2.41
CCDC40Q4G0X9 AL365205.2-201ENST00000594586 68 ntBASIC-0.01□□□□□ -2.41
CCDC40Q4G0X9 AC021613.1-201ENST00000623880 111 ntBASIC-0.01□□□□□ -2.41
CCDC40Q4G0X9 RNU6-1229P-201ENST00000364295 107 ntBASIC-0.02□□□□□ -2.41
CCDC40Q4G0X9 Y_RNA.237-201ENST00000364439 102 ntBASIC-0.02□□□□□ -2.41
CCDC40Q4G0X9 Y_RNA.536-201ENST00000384621 113 ntBASIC-0.02□□□□□ -2.41
CCDC40Q4G0X9 RNU6-291P-201ENST00000384720 107 ntBASIC-0.02□□□□□ -2.41
CCDC40Q4G0X9 MIR7-2-201ENST00000384970 110 ntBASIC-0.02□□□□□ -2.41
CCDC40Q4G0X9 RNU6-381P-201ENST00000391259 108 ntBASIC-0.02□□□□□ -2.41
CCDC40Q4G0X9 RNU6-893P-201ENST00000458841 100 ntBASIC-0.02□□□□□ -2.41
CCDC40Q4G0X9 RNA5SP47-201ENST00000517230 109 ntBASIC-0.02□□□□□ -2.41
CCDC40Q4G0X9 U2.14-201ENST00000615943 113 ntBASIC-0.02□□□□□ -2.41
CCDC40Q4G0X9 AC091304.10-201ENST00000641554 121 ntBASIC-0.02□□□□□ -2.41
CCDC40Q4G0X9 SNORD114-16-201ENST00000363044 70 ntBASIC-0.03□□□□□ -2.41
CCDC40Q4G0X9 Y_RNA.176-201ENST00000363815 109 ntBASIC-0.03□□□□□ -2.41
CCDC40Q4G0X9 RNU6-728P-201ENST00000365375 104 ntBASIC-0.03□□□□□ -2.41
CCDC40Q4G0X9 Y_RNA.423-201ENST00000384057 113 ntBASIC-0.03□□□□□ -2.41
CCDC40Q4G0X9 Y_RNA.539-201ENST00000384635 107 ntBASIC-0.03□□□□□ -2.41
CCDC40Q4G0X9 RNA5SP63-201ENST00000391225 112 ntBASIC-0.03□□□□□ -2.41
CCDC40Q4G0X9 PCNPP3-201ENST00000393579 471 ntBASIC-0.03□□□□□ -2.41
CCDC40Q4G0X9 RNU4-43P-201ENST00000410628 137 ntBASIC-0.03□□□□□ -2.41
CCDC40Q4G0X9 RNU5E-9P-201ENST00000411164 104 ntBASIC-0.03□□□□□ -2.41
CCDC40Q4G0X9 TRBVB-201ENST00000477100 408 ntBASIC-0.03□□□□□ -2.41
CCDC40Q4G0X9 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC-0.03□□□□□ -2.41
CCDC40Q4G0X9 AC020661.2-201ENST00000560114 134 ntBASIC-0.03□□□□□ -2.41
CCDC40Q4G0X9 MTND5P34-201ENST00000568888 325 ntBASIC-0.03□□□□□ -2.41
CCDC40Q4G0X9 MIR4639-201ENST00000584938 69 ntBASIC-0.03□□□□□ -2.41
CCDC40Q4G0X9 MIR4768-201ENST00000585270 74 ntBASIC-0.03□□□□□ -2.41
CCDC40Q4G0X9 AC104408.1-201ENST00000605241 170 ntBASIC-0.03□□□□□ -2.41
CCDC40Q4G0X9 AL365265.1-201ENST00000621045 234 ntBASIC-0.03□□□□□ -2.41
CCDC40Q4G0X9 MIR371B-201ENST00000638082 66 ntBASIC-0.03□□□□□ -2.41
CCDC40Q4G0X9 RNU6-187P-201ENST00000384139 106 ntBASIC-0.04□□□□□ -2.42
CCDC40Q4G0X9 SNORA18-201ENST00000384416 132 ntBASIC-0.04□□□□□ -2.42
CCDC40Q4G0X9 Y_RNA.535-201ENST00000384612 99 ntBASIC-0.04□□□□□ -2.42
CCDC40Q4G0X9 SNORD28-201ENST00000384706 75 ntBASIC-0.04□□□□□ -2.42
CCDC40Q4G0X9 RNU6-535P-201ENST00000384722 107 ntBASIC-0.04□□□□□ -2.42
CCDC40Q4G0X9 Y_RNA.590-201ENST00000410140 107 ntBASIC-0.04□□□□□ -2.42
CCDC40Q4G0X9 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC-0.04□□□□□ -2.42
CCDC40Q4G0X9 Y_RNA.697-201ENST00000516776 113 ntBASIC-0.04□□□□□ -2.42
CCDC40Q4G0X9 RNU7-70P-201ENST00000516941 66 ntBASIC-0.04□□□□□ -2.42
CCDC40Q4G0X9 AL442663.2-201ENST00000554385 511 ntBASIC-0.04□□□□□ -2.42
CCDC40Q4G0X9 MIR4282-201ENST00000583613 67 ntBASIC-0.04□□□□□ -2.42
CCDC40Q4G0X9 MIR411-201ENST00000362239 96 ntBASIC-0.05□□□□□ -2.42
CCDC40Q4G0X9 Y_RNA.202-201ENST00000364083 110 ntBASIC-0.05□□□□□ -2.42
CCDC40Q4G0X9 RNU6-985P-201ENST00000410182 104 ntBASIC-0.05□□□□□ -2.42
CCDC40Q4G0X9 RNU6-1086P-201ENST00000410930 100 ntBASIC-0.05□□□□□ -2.42
CCDC40Q4G0X9 Y_RNA.660-201ENST00000516002 120 ntBASIC-0.05□□□□□ -2.42
CCDC40Q4G0X9 SNORA25.16-201ENST00000516741 121 ntBASIC-0.05□□□□□ -2.42
CCDC40Q4G0X9 IGHVIII-67-2-201ENST00000519849 88 ntBASIC-0.05□□□□□ -2.42
CCDC40Q4G0X9 AL442067.1-201ENST00000613261 223 ntBASIC-0.05□□□□□ -2.42
CCDC40Q4G0X9 Y_RNA.115-201ENST00000363272 98 ntBASIC-0.06□□□□□ -2.42
CCDC40Q4G0X9 RNY1P13-201ENST00000365030 105 ntBASIC-0.06□□□□□ -2.42
CCDC40Q4G0X9 RNU6-1126P-201ENST00000384002 107 ntBASIC-0.06□□□□□ -2.42
CCDC40Q4G0X9 Y_RNA.515-201ENST00000384535 112 ntBASIC-0.06□□□□□ -2.42
CCDC40Q4G0X9 MTND4LP11-201ENST00000422184 280 ntBASIC-0.06□□□□□ -2.42
CCDC40Q4G0X9 Y_RNA.679-201ENST00000516416 91 ntBASIC-0.06□□□□□ -2.42
CCDC40Q4G0X9 MIR335-201ENST00000362173 94 ntBASIC-0.07□□□□□ -2.42
CCDC40Q4G0X9 RNU6-103P-201ENST00000363686 107 ntBASIC-0.07□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 211.8 ms