Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 MIR548H5-201ENST00000580314 60 ntBASIC-0.78□□□□□ -2.53
CCDC88AQ3V6T2 MIR4436A-201ENST00000585278 85 ntBASIC-0.78□□□□□ -2.53
CCDC88AQ3V6T2 U4.5-201ENST00000617137 123 ntBASIC-0.78□□□□□ -2.53
CCDC88AQ3V6T2 RNU6-397P-201ENST00000516226 104 ntBASIC-0.78□□□□□ -2.53
CCDC88AQ3V6T2 AC011476.5-201ENST00000615594 130 ntBASIC-0.78□□□□□ -2.53
CCDC88AQ3V6T2 AC138305.3-201ENST00000624988 240 ntBASIC-0.78□□□□□ -2.53
CCDC88AQ3V6T2 RNU4-84P-201ENST00000364200 139 ntBASIC-0.79□□□□□ -2.54
CCDC88AQ3V6T2 SNORA20-201ENST00000384662 132 ntBASIC-0.79□□□□□ -2.54
CCDC88AQ3V6T2 MT-TT-201ENST00000387460 66 ntBASIC-0.79□□□□□ -2.54
CCDC88AQ3V6T2 Y_RNA.653-201ENST00000459091 95 ntBASIC-0.79□□□□□ -2.54
CCDC88AQ3V6T2 RNU7-79P-201ENST00000516082 62 ntBASIC-0.79□□□□□ -2.54
CCDC88AQ3V6T2 AL365205.2-201ENST00000594586 68 ntBASIC-0.79□□□□□ -2.54
CCDC88AQ3V6T2 AC025253.1-201ENST00000613623 543 ntBASIC-0.79□□□□□ -2.54
CCDC88AQ3V6T2 AC105081.1-201ENST00000617727 106 ntBASIC-0.79□□□□□ -2.54
CCDC88AQ3V6T2 MIR365A-201ENST00000362260 87 ntBASIC-0.8□□□□□ -2.54
CCDC88AQ3V6T2 RNU6-708P-201ENST00000384217 107 ntBASIC-0.8□□□□□ -2.54
CCDC88AQ3V6T2 RNU7-74P-201ENST00000459104 62 ntBASIC-0.8□□□□□ -2.54
CCDC88AQ3V6T2 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC-0.8□□□□□ -2.54
CCDC88AQ3V6T2 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC-0.8□□□□□ -2.54
CCDC88AQ3V6T2 RNU6-291P-201ENST00000384720 107 ntBASIC-0.8□□□□□ -2.54
CCDC88AQ3V6T2 MIR628-201ENST00000385229 95 ntBASIC-0.8□□□□□ -2.54
CCDC88AQ3V6T2 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC-0.8□□□□□ -2.54
CCDC88AQ3V6T2 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC-0.8□□□□□ -2.54
CCDC88AQ3V6T2 MRPS35P2-201ENST00000508242 191 ntBASIC-0.8□□□□□ -2.54
CCDC88AQ3V6T2 AC024909.2-201ENST00000553035 286 ntBASIC-0.8□□□□□ -2.54
CCDC88AQ3V6T2 MIR4324-201ENST00000584846 72 ntBASIC-0.8□□□□□ -2.54
CCDC88AQ3V6T2 MIR6507-201ENST00000613630 70 ntBASIC-0.8□□□□□ -2.54
CCDC88AQ3V6T2 Y_RNA.88-201ENST00000363029 99 ntBASIC-0.81□□□□□ -2.54
CCDC88AQ3V6T2 SNORD114-10-201ENST00000363409 72 ntBASIC-0.81□□□□□ -2.54
CCDC88AQ3V6T2 SNORA18-201ENST00000384416 132 ntBASIC-0.81□□□□□ -2.54
CCDC88AQ3V6T2 MIR181B2-201ENST00000385004 89 ntBASIC-0.81□□□□□ -2.54
CCDC88AQ3V6T2 Y_RNA.605-201ENST00000410577 105 ntBASIC-0.81□□□□□ -2.54
CCDC88AQ3V6T2 RNU2-16P-201ENST00000410712 136 ntBASIC-0.81□□□□□ -2.54
CCDC88AQ3V6T2 RNU6-1190P-201ENST00000410811 104 ntBASIC-0.81□□□□□ -2.54
CCDC88AQ3V6T2 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC-0.81□□□□□ -2.54
CCDC88AQ3V6T2 MTND1P29-201ENST00000448112 647 ntBASIC-0.81□□□□□ -2.54
CCDC88AQ3V6T2 MIR20A-201ENST00000362279 71 ntBASIC-0.82□□□□□ -2.54
CCDC88AQ3V6T2 Y_RNA.14-201ENST00000362415 103 ntBASIC-0.82□□□□□ -2.54
CCDC88AQ3V6T2 SNORA63.5-201ENST00000363548 123 ntBASIC-0.82□□□□□ -2.54
CCDC88AQ3V6T2 Y_RNA.515-201ENST00000384535 112 ntBASIC-0.82□□□□□ -2.54
CCDC88AQ3V6T2 RNU7-110P-201ENST00000516891 62 ntBASIC-0.82□□□□□ -2.54
CCDC88AQ3V6T2 MIR4752-201ENST00000579672 72 ntBASIC-0.82□□□□□ -2.54
CCDC88AQ3V6T2 AL669831.3-213ENST00000636676 183 ntBASIC-0.82□□□□□ -2.54
CCDC88AQ3V6T2 RNU6-1205P-201ENST00000363625 106 ntBASIC-0.82□□□□□ -2.54
CCDC88AQ3V6T2 RNU6-865P-201ENST00000364772 107 ntBASIC-0.82□□□□□ -2.54
CCDC88AQ3V6T2 SNORD114-29-201ENST00000364819 70 ntBASIC-0.82□□□□□ -2.54
CCDC88AQ3V6T2 Y_RNA.299-201ENST00000364973 94 ntBASIC-0.82□□□□□ -2.54
CCDC88AQ3V6T2 Y_RNA.439-201ENST00000384119 94 ntBASIC-0.82□□□□□ -2.54
CCDC88AQ3V6T2 SNORA72.6-201ENST00000384520 129 ntBASIC-0.82□□□□□ -2.54
CCDC88AQ3V6T2 TRAJ51-201ENST00000504127 63 ntBASIC-0.82□□□□□ -2.54
CCDC88AQ3V6T2 MIR3165-201ENST00000579874 75 ntBASIC-0.82□□□□□ -2.54
CCDC88AQ3V6T2 AL670379.3-201ENST00000605040 251 ntBASIC-0.82□□□□□ -2.54
CCDC88AQ3V6T2 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC-0.82□□□□□ -2.54
CCDC88AQ3V6T2 RNU4-90P-201ENST00000362773 141 ntBASIC-0.83□□□□□ -2.54
CCDC88AQ3V6T2 Y_RNA.428-201ENST00000384078 102 ntBASIC-0.83□□□□□ -2.54
CCDC88AQ3V6T2 RNU6-763P-201ENST00000390865 106 ntBASIC-0.83□□□□□ -2.54
CCDC88AQ3V6T2 RNU6-1321P-201ENST00000390905 107 ntBASIC-0.83□□□□□ -2.54
CCDC88AQ3V6T2 RNA5SP153-201ENST00000516498 76 ntBASIC-0.83□□□□□ -2.54
CCDC88AQ3V6T2 RNU2-31P-201ENST00000516954 155 ntBASIC-0.83□□□□□ -2.54
CCDC88AQ3V6T2 RNU7-4P-201ENST00000516961 62 ntBASIC-0.83□□□□□ -2.54
CCDC88AQ3V6T2 C8orf59P2-201ENST00000603441 271 ntBASIC-0.83□□□□□ -2.54
CCDC88AQ3V6T2 Y_RNA.288-201ENST00000364854 92 ntBASIC-0.84□□□□□ -2.54
CCDC88AQ3V6T2 Y_RNA.424-201ENST00000384063 103 ntBASIC-0.84□□□□□ -2.54
CCDC88AQ3V6T2 Y_RNA.555-201ENST00000384673 110 ntBASIC-0.84□□□□□ -2.54
CCDC88AQ3V6T2 RNU6-21P-201ENST00000384710 107 ntBASIC-0.84□□□□□ -2.54
CCDC88AQ3V6T2 MIR1285-2-201ENST00000408311 88 ntBASIC-0.84□□□□□ -2.54
CCDC88AQ3V6T2 AC093726.3-201ENST00000637588 150 ntBASIC-0.84□□□□□ -2.54
CCDC88AQ3V6T2 RNU6-490P-201ENST00000362985 107 ntBASIC-0.84□□□□□ -2.54
CCDC88AQ3V6T2 Y_RNA.366-201ENST00000365540 102 ntBASIC-0.84□□□□□ -2.54
CCDC88AQ3V6T2 Y_RNA.413-201ENST00000384007 102 ntBASIC-0.84□□□□□ -2.54
CCDC88AQ3V6T2 Y_RNA.559-201ENST00000384686 107 ntBASIC-0.84□□□□□ -2.54
CCDC88AQ3V6T2 MTATP6P26-201ENST00000445926 662 ntBASIC-0.84□□□□□ -2.54
CCDC88AQ3V6T2 Y_RNA.754-201ENST00000476024 102 ntBASIC-0.84□□□□□ -2.54
CCDC88AQ3V6T2 RN7SKP19-201ENST00000516016 252 ntBASIC-0.84□□□□□ -2.54
CCDC88AQ3V6T2 SNORD36C-201ENST00000516733 66 ntBASIC-0.84□□□□□ -2.54
CCDC88AQ3V6T2 AC007012.1-201ENST00000567192 175 ntBASIC-0.84□□□□□ -2.54
CCDC88AQ3V6T2 SNORD58B-201ENST00000607313 66 ntBASIC-0.84□□□□□ -2.54
CCDC88AQ3V6T2 AC011603.4-201ENST00000611325 277 ntBASIC-0.84□□□□□ -2.54
CCDC88AQ3V6T2 Y_RNA.790-201ENST00000614282 102 ntBASIC-0.84□□□□□ -2.54
CCDC88AQ3V6T2 Y_RNA.782-201ENST00000614695 102 ntBASIC-0.84□□□□□ -2.54
CCDC88AQ3V6T2 U4.2-201ENST00000618561 85 ntBASIC-0.84□□□□□ -2.54
CCDC88AQ3V6T2 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC-0.85□□□□□ -2.54
CCDC88AQ3V6T2 Y_RNA.143-201ENST00000363520 106 ntBASIC-0.85□□□□□ -2.55
CCDC88AQ3V6T2 Y_RNA.181-201ENST00000363872 101 ntBASIC-0.85□□□□□ -2.55
CCDC88AQ3V6T2 Y_RNA.357-201ENST00000365487 109 ntBASIC-0.85□□□□□ -2.55
CCDC88AQ3V6T2 Y_RNA.554-201ENST00000384672 102 ntBASIC-0.85□□□□□ -2.55
CCDC88AQ3V6T2 RNU4-14P-201ENST00000410858 122 ntBASIC-0.85□□□□□ -2.55
CCDC88AQ3V6T2 AC006210.1-201ENST00000424882 111 ntBASIC-0.85□□□□□ -2.55
CCDC88AQ3V6T2 SNRPGP8-201ENST00000454064 226 ntBASIC-0.85□□□□□ -2.55
CCDC88AQ3V6T2 RNU6-120P-201ENST00000516077 103 ntBASIC-0.85□□□□□ -2.55
CCDC88AQ3V6T2 RNU6-699P-201ENST00000517081 110 ntBASIC-0.85□□□□□ -2.55
CCDC88AQ3V6T2 MIR378F-201ENST00000578143 78 ntBASIC-0.85□□□□□ -2.55
CCDC88AQ3V6T2 MIR4423-201ENST00000580922 80 ntBASIC-0.85□□□□□ -2.55
CCDC88AQ3V6T2 SNORA25.7-201ENST00000364375 127 ntBASIC-0.86□□□□□ -2.55
CCDC88AQ3V6T2 RNU6-1062P-201ENST00000383908 107 ntBASIC-0.86□□□□□ -2.55
CCDC88AQ3V6T2 Y_RNA.454-201ENST00000384224 113 ntBASIC-0.86□□□□□ -2.55
CCDC88AQ3V6T2 Y_RNA.599-201ENST00000410489 109 ntBASIC-0.86□□□□□ -2.55
CCDC88AQ3V6T2 Y_RNA.646-201ENST00000410980 101 ntBASIC-0.86□□□□□ -2.55
CCDC88AQ3V6T2 AC097635.1-201ENST00000450678 155 ntBASIC-0.86□□□□□ -2.55
CCDC88AQ3V6T2 HSPE1P25-201ENST00000455484 251 ntBASIC-0.86□□□□□ -2.55
Retrieved 100 of 98,524 protein–RNA pairs in 243.9 ms