Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 Y_RNA.116-201ENST00000363292 103 ntBASIC1.14□□□□□ -2.23
LMO4P61968 RNU6-1107P-201ENST00000364817 104 ntBASIC1.14□□□□□ -2.23
LMO4P61968 Y_RNA.362-201ENST00000365518 110 ntBASIC1.14□□□□□ -2.23
LMO4P61968 RNU6-913P-201ENST00000390913 95 ntBASIC1.14□□□□□ -2.23
LMO4P61968 SNORA26.6-201ENST00000391256 115 ntBASIC1.14□□□□□ -2.23
LMO4P61968 RNU7-67P-201ENST00000459003 62 ntBASIC1.14□□□□□ -2.23
LMO4P61968 RNU7-53P-201ENST00000516705 60 ntBASIC1.14□□□□□ -2.23
LMO4P61968 SNORA74.3-201ENST00000517108 154 ntBASIC1.14□□□□□ -2.23
LMO4P61968 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.14□□□□□ -2.23
LMO4P61968 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC1.14□□□□□ -2.23
LMO4P61968 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.13□□□□□ -2.23
LMO4P61968 MIR450A1-201ENST00000362262 91 ntBASIC1.13□□□□□ -2.23
LMO4P61968 SNORA63.5-201ENST00000363548 123 ntBASIC1.13□□□□□ -2.23
LMO4P61968 Y_RNA.344-201ENST00000365381 112 ntBASIC1.13□□□□□ -2.23
LMO4P61968 RNU6-106P-201ENST00000384405 107 ntBASIC1.13□□□□□ -2.23
LMO4P61968 RNU6-1319P-201ENST00000390855 104 ntBASIC1.13□□□□□ -2.23
LMO4P61968 RNU6-747P-201ENST00000390928 104 ntBASIC1.13□□□□□ -2.23
LMO4P61968 RNU6-241P-201ENST00000391148 104 ntBASIC1.13□□□□□ -2.23
LMO4P61968 RNU6-554P-201ENST00000410466 106 ntBASIC1.13□□□□□ -2.23
LMO4P61968 RNU6-177P-201ENST00000411257 104 ntBASIC1.13□□□□□ -2.23
LMO4P61968 RPS27P16-201ENST00000425758 201 ntBASIC1.13□□□□□ -2.23
LMO4P61968 AL512326.2-201ENST00000426359 151 ntBASIC1.13□□□□□ -2.23
LMO4P61968 RNU7-73P-201ENST00000458743 63 ntBASIC1.13□□□□□ -2.23
LMO4P61968 RNU6-412P-201ENST00000516434 106 ntBASIC1.13□□□□□ -2.23
LMO4P61968 MIR4679-2-201ENST00000578358 77 ntBASIC1.13□□□□□ -2.23
LMO4P61968 AL020996.3-201ENST00000606617 222 ntBASIC1.13□□□□□ -2.23
LMO4P61968 MIR4791-201ENST00000607666 84 ntBASIC1.13□□□□□ -2.23
LMO4P61968 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.13□□□□□ -2.23
LMO4P61968 MIR6841-201ENST00000637129 72 ntBASIC1.13□□□□□ -2.23
LMO4P61968 SNORA22.1-201ENST00000362701 134 ntBASIC1.12□□□□□ -2.23
LMO4P61968 RNY4P6-201ENST00000363667 96 ntBASIC1.12□□□□□ -2.23
LMO4P61968 Y_RNA.171-201ENST00000363760 102 ntBASIC1.12□□□□□ -2.23
LMO4P61968 SNORA51.10-201ENST00000384418 136 ntBASIC1.12□□□□□ -2.23
LMO4P61968 Y_RNA.537-201ENST00000384626 109 ntBASIC1.12□□□□□ -2.23
LMO4P61968 MIR548D2-201ENST00000384955 97 ntBASIC1.12□□□□□ -2.23
LMO4P61968 MIR653-201ENST00000385279 96 ntBASIC1.12□□□□□ -2.23
LMO4P61968 MIR759-201ENST00000390224 91 ntBASIC1.12□□□□□ -2.23
LMO4P61968 AL022718.1-201ENST00000412004 84 ntBASIC1.12□□□□□ -2.23
LMO4P61968 HMGN1P33-201ENST00000432945 451 ntBASIC1.12□□□□□ -2.23
LMO4P61968 RPS23P4-201ENST00000487908 423 ntBASIC1.12□□□□□ -2.23
LMO4P61968 RNU7-43P-201ENST00000516554 64 ntBASIC1.12□□□□□ -2.23
LMO4P61968 RNU6-1258P-201ENST00000516911 111 ntBASIC1.12□□□□□ -2.23
LMO4P61968 AC004812.1-201ENST00000540773 146 ntBASIC1.12□□□□□ -2.23
LMO4P61968 MIR4764-201ENST00000580680 88 ntBASIC1.12□□□□□ -2.23
LMO4P61968 MIR3163-201ENST00000581592 73 ntBASIC1.12□□□□□ -2.23
LMO4P61968 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC1.12□□□□□ -2.23
LMO4P61968 AC008133.2-201ENST00000624540 351 ntBASIC1.12□□□□□ -2.23
LMO4P61968 AL161722.3-201ENST00000605789 2983 ntBASIC1.11□□□□□ -2.23
LMO4P61968 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.11□□□□□ -2.23
LMO4P61968 Y_RNA.531-201ENST00000384589 121 ntBASIC1.11□□□□□ -2.23
LMO4P61968 MIR1287-201ENST00000408492 90 ntBASIC1.11□□□□□ -2.23
LMO4P61968 AL031737.1-201ENST00000450125 223 ntBASIC1.11□□□□□ -2.23
LMO4P61968 RNU1-123P-201ENST00000458950 160 ntBASIC1.11□□□□□ -2.23
LMO4P61968 RPL39P34-201ENST00000477141 156 ntBASIC1.11□□□□□ -2.23
LMO4P61968 AL513534.2-201ENST00000603836 250 ntBASIC1.11□□□□□ -2.23
LMO4P61968 MIR6717-201ENST00000622747 73 ntBASIC1.11□□□□□ -2.23
LMO4P61968 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.11□□□□□ -2.23
LMO4P61968 AL589743.1-201ENST00000551932 2712 ntBASIC1.1□□□□□ -2.23
LMO4P61968 Y_RNA.163-201ENST00000363702 113 ntBASIC1.1□□□□□ -2.23
LMO4P61968 Y_RNA.323-201ENST00000365157 109 ntBASIC1.1□□□□□ -2.23
LMO4P61968 RNU6-1014P-201ENST00000383940 103 ntBASIC1.1□□□□□ -2.23
LMO4P61968 Y_RNA.470-201ENST00000384307 117 ntBASIC1.1□□□□□ -2.23
LMO4P61968 RNU6-997P-201ENST00000384725 107 ntBASIC1.1□□□□□ -2.23
LMO4P61968 MIR499A-201ENST00000384903 122 ntBASIC1.1□□□□□ -2.23
LMO4P61968 MIR520C-201ENST00000385005 87 ntBASIC1.1□□□□□ -2.23
LMO4P61968 SNORD41-201ENST00000386967 70 ntBASIC1.1□□□□□ -2.23
LMO4P61968 RNA5SP89-201ENST00000410300 108 ntBASIC1.1□□□□□ -2.23
LMO4P61968 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.1□□□□□ -2.23
LMO4P61968 RNU7-113P-201ENST00000459273 62 ntBASIC1.1□□□□□ -2.23
LMO4P61968 RNU7-6P-201ENST00000516845 62 ntBASIC1.1□□□□□ -2.23
LMO4P61968 IGHVII-40-1-201ENST00000517316 58 ntBASIC1.1□□□□□ -2.23
LMO4P61968 MIR3660-201ENST00000584845 100 ntBASIC1.1□□□□□ -2.23
LMO4P61968 AC087741.2-201ENST00000619415 172 ntBASIC1.1□□□□□ -2.23
LMO4P61968 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.1□□□□□ -2.23
LMO4P61968 RNU6-1298P-201ENST00000362456 101 ntBASIC1.09□□□□□ -2.23
LMO4P61968 Y_RNA.49-201ENST00000362714 112 ntBASIC1.09□□□□□ -2.23
LMO4P61968 U8.6-201ENST00000364939 135 ntBASIC1.09□□□□□ -2.23
LMO4P61968 Y_RNA.430-201ENST00000384081 110 ntBASIC1.09□□□□□ -2.23
LMO4P61968 RPS29P23-201ENST00000458635 123 ntBASIC1.09□□□□□ -2.23
LMO4P61968 MIR1270-201ENST00000459320 83 ntBASIC1.09□□□□□ -2.23
LMO4P61968 snoU13.16-201ENST00000459350 104 ntBASIC1.09□□□□□ -2.23
LMO4P61968 AC004223.1-201ENST00000479840 271 ntBASIC1.09□□□□□ -2.23
LMO4P61968 AC113410.1-201ENST00000505029 247 ntBASIC1.09□□□□□ -2.23
LMO4P61968 RNU7-41P-201ENST00000515917 61 ntBASIC1.09□□□□□ -2.23
LMO4P61968 RNU6-322P-201ENST00000516010 103 ntBASIC1.09□□□□□ -2.23
LMO4P61968 RNU6-168P-201ENST00000516189 101 ntBASIC1.09□□□□□ -2.23
LMO4P61968 RNU6-922P-201ENST00000516753 99 ntBASIC1.09□□□□□ -2.23
LMO4P61968 AC068339.1-201ENST00000526965 141 ntBASIC1.09□□□□□ -2.23
LMO4P61968 MIR3152-201ENST00000579801 74 ntBASIC1.09□□□□□ -2.23
LMO4P61968 MIR548AE2-201ENST00000583456 67 ntBASIC1.09□□□□□ -2.23
LMO4P61968 RNU6-94P-201ENST00000607728 107 ntBASIC1.09□□□□□ -2.23
LMO4P61968 SNORD115-2-201ENST00000362842 82 ntBASIC1.08□□□□□ -2.24
LMO4P61968 SNORA25.9-201ENST00000365087 128 ntBASIC1.08□□□□□ -2.24
LMO4P61968 SNORD115-20-201ENST00000365099 82 ntBASIC1.08□□□□□ -2.24
LMO4P61968 RNU6-53P-201ENST00000365367 106 ntBASIC1.08□□□□□ -2.24
LMO4P61968 Y_RNA.495-201ENST00000384435 112 ntBASIC1.08□□□□□ -2.24
LMO4P61968 RNU6-1067P-201ENST00000384752 107 ntBASIC1.08□□□□□ -2.24
LMO4P61968 SNORA40.6-201ENST00000391153 128 ntBASIC1.08□□□□□ -2.24
LMO4P61968 AL451046.2-201ENST00000403074 277 ntBASIC1.08□□□□□ -2.24
LMO4P61968 RNA5SP261-201ENST00000410536 106 ntBASIC1.08□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 200.7 ms