Protein–RNA interactions for Protein: P48436

SOX9, Transcription factor SOX-9, humanhuman

Predictions only

Length 509 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX9P48436 SNORD115-20-201ENST00000365099 82 ntBASIC1.89□□□□□ -2.11
SOX9P48436 SNORD20-201ENST00000384550 80 ntBASIC1.89□□□□□ -2.11
SOX9P48436 RNU6-1104P-201ENST00000384723 104 ntBASIC1.89□□□□□ -2.11
SOX9P48436 RNU4-69P-201ENST00000410677 143 ntBASIC1.89□□□□□ -2.11
SOX9P48436 BTF3P4-201ENST00000418852 495 ntBASIC1.89□□□□□ -2.11
SOX9P48436 RNU6-412P-201ENST00000516434 106 ntBASIC1.89□□□□□ -2.11
SOX9P48436 RNU11-2P-201ENST00000516898 142 ntBASIC1.89□□□□□ -2.11
SOX9P48436 AC012493.3-201ENST00000604494 112 ntBASIC1.89□□□□□ -2.11
SOX9P48436 RN7SL274P-201ENST00000492268 272 ntBASIC1.88□□□□□ -2.11
SOX9P48436 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.88□□□□□ -2.11
SOX9P48436 RNU6-919P-201ENST00000516731 104 ntBASIC1.88□□□□□ -2.11
SOX9P48436 RNU6-1258P-201ENST00000516911 111 ntBASIC1.88□□□□□ -2.11
SOX9P48436 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.88□□□□□ -2.11
SOX9P48436 RNU4-62P-201ENST00000410125 130 ntBASIC1.87□□□□□ -2.11
SOX9P48436 RNA5SP237-201ENST00000410414 113 ntBASIC1.87□□□□□ -2.11
SOX9P48436 AC090844.1-201ENST00000422019 156 ntBASIC1.87□□□□□ -2.11
SOX9P48436 RNU6-165P-201ENST00000517170 99 ntBASIC1.87□□□□□ -2.11
SOX9P48436 PRELID3BP2-201ENST00000605362 201 ntBASIC1.87□□□□□ -2.11
SOX9P48436 MIR8065-201ENST00000620577 100 ntBASIC1.87□□□□□ -2.11
SOX9P48436 RNU6-215P-201ENST00000365169 102 ntBASIC1.86□□□□□ -2.11
SOX9P48436 Y_RNA.355-201ENST00000365462 98 ntBASIC1.86□□□□□ -2.11
SOX9P48436 Y_RNA.470-201ENST00000384307 117 ntBASIC1.86□□□□□ -2.11
SOX9P48436 RPL31P63-201ENST00000422565 375 ntBASIC1.86□□□□□ -2.11
SOX9P48436 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.86□□□□□ -2.11
SOX9P48436 MIR4285-201ENST00000581001 85 ntBASIC1.86□□□□□ -2.11
SOX9P48436 MIR4303-201ENST00000581299 66 ntBASIC1.86□□□□□ -2.11
SOX9P48436 MIR548AE2-201ENST00000583456 67 ntBASIC1.86□□□□□ -2.11
SOX9P48436 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.86□□□□□ -2.11
SOX9P48436 AL589743.1-201ENST00000551932 2712 ntBASIC1.85□□□□□ -2.11
SOX9P48436 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.85□□□□□ -2.11
SOX9P48436 Y_RNA.35-201ENST00000362601 101 ntBASIC1.85□□□□□ -2.11
SOX9P48436 SNORA32-201ENST00000384072 121 ntBASIC1.85□□□□□ -2.11
SOX9P48436 RNU6-429P-201ENST00000384582 108 ntBASIC1.85□□□□□ -2.11
SOX9P48436 MIR499A-201ENST00000384903 122 ntBASIC1.85□□□□□ -2.11
SOX9P48436 MIR548D2-201ENST00000384955 97 ntBASIC1.85□□□□□ -2.11
SOX9P48436 MIR4264-201ENST00000583520 66 ntBASIC1.85□□□□□ -2.11
SOX9P48436 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.85□□□□□ -2.11
SOX9P48436 SNORA18-201ENST00000384416 132 ntBASIC1.84□□□□□ -2.11
SOX9P48436 SNORD12C-201ENST00000386307 89 ntBASIC1.84□□□□□ -2.11
SOX9P48436 SUMO2P12-201ENST00000405924 140 ntBASIC1.84□□□□□ -2.11
SOX9P48436 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.84□□□□□ -2.11
SOX9P48436 Y_RNA.466-201ENST00000384294 113 ntBASIC1.83□□□□□ -2.12
SOX9P48436 RNU6-1237P-201ENST00000384777 107 ntBASIC1.83□□□□□ -2.12
SOX9P48436 MT-TI-201ENST00000387365 69 ntBASIC1.83□□□□□ -2.12
SOX9P48436 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.83□□□□□ -2.12
SOX9P48436 MIR1185-1-201ENST00000408598 86 ntBASIC1.83□□□□□ -2.12
SOX9P48436 RNU6-1054P-201ENST00000411293 104 ntBASIC1.83□□□□□ -2.12
SOX9P48436 snoU13.25-201ENST00000458945 104 ntBASIC1.83□□□□□ -2.12
SOX9P48436 SNORA31.2-201ENST00000516019 134 ntBASIC1.83□□□□□ -2.12
SOX9P48436 Y_RNA.709-201ENST00000516952 92 ntBASIC1.83□□□□□ -2.12
SOX9P48436 MIR4679-2-201ENST00000578358 77 ntBASIC1.83□□□□□ -2.12
SOX9P48436 RNY1P10-201ENST00000363268 113 ntBASIC1.82□□□□□ -2.12
SOX9P48436 SNORA63.5-201ENST00000363548 123 ntBASIC1.82□□□□□ -2.12
SOX9P48436 Y_RNA.362-201ENST00000365518 110 ntBASIC1.82□□□□□ -2.12
SOX9P48436 MT-TN-201ENST00000387400 73 ntBASIC1.82□□□□□ -2.12
SOX9P48436 MIR1302-7-201ENST00000408841 72 ntBASIC1.82□□□□□ -2.12
SOX9P48436 RNU6-321P-201ENST00000410912 106 ntBASIC1.82□□□□□ -2.12
SOX9P48436 AP1B1P2-201ENST00000416196 106 ntBASIC1.82□□□□□ -2.12
SOX9P48436 AL035461.1-201ENST00000421490 332 ntBASIC1.82□□□□□ -2.12
SOX9P48436 AC048334.1-201ENST00000477975 159 ntBASIC1.82□□□□□ -2.12
SOX9P48436 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
SOX9P48436 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
SOX9P48436 Y_RNA.49-201ENST00000362714 112 ntBASIC1.81□□□□□ -2.12
SOX9P48436 SNORA25.9-201ENST00000365087 128 ntBASIC1.81□□□□□ -2.12
SOX9P48436 AP003716.2-201ENST00000528260 108 ntBASIC1.81□□□□□ -2.12
SOX9P48436 MIR8070-201ENST00000616510 88 ntBASIC1.81□□□□□ -2.12
SOX9P48436 MIR6516-201ENST00000630554 81 ntBASIC1.81□□□□□ -2.12
SOX9P48436 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC1.81□□□□□ -2.12
SOX9P48436 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
SOX9P48436 RNU6-342P-201ENST00000384521 104 ntBASIC1.8□□□□□ -2.12
SOX9P48436 MIR518E-201ENST00000385252 88 ntBASIC1.8□□□□□ -2.12
SOX9P48436 RNU6-205P-201ENST00000390858 107 ntBASIC1.8□□□□□ -2.12
SOX9P48436 RPL39P25-201ENST00000449384 154 ntBASIC1.8□□□□□ -2.12
SOX9P48436 RNU6-589P-201ENST00000516485 107 ntBASIC1.8□□□□□ -2.12
SOX9P48436 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
SOX9P48436 AL391516.1-201ENST00000554380 2449 ntBASIC1.8□□□□□ -2.12
SOX9P48436 SNORA16.1-201ENST00000364597 132 ntBASIC1.79□□□□□ -2.12
SOX9P48436 Y_RNA.330-201ENST00000365230 109 ntBASIC1.79□□□□□ -2.12
SOX9P48436 MIR588-201ENST00000384900 83 ntBASIC1.79□□□□□ -2.12
SOX9P48436 RNU6-613P-201ENST00000410412 108 ntBASIC1.79□□□□□ -2.12
SOX9P48436 RNU6-1086P-201ENST00000410930 100 ntBASIC1.79□□□□□ -2.12
SOX9P48436 AC244023.1-201ENST00000426884 112 ntBASIC1.79□□□□□ -2.12
SOX9P48436 RNU7-62P-201ENST00000458856 62 ntBASIC1.79□□□□□ -2.12
SOX9P48436 snoU13.2-201ENST00000459201 104 ntBASIC1.79□□□□□ -2.12
SOX9P48436 AC242498.1-201ENST00000604134 111 ntBASIC1.79□□□□□ -2.12
SOX9P48436 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
SOX9P48436 Y_RNA.281-201ENST00000364774 94 ntBASIC1.78□□□□□ -2.12
SOX9P48436 Y_RNA.309-201ENST00000365046 111 ntBASIC1.78□□□□□ -2.12
SOX9P48436 SNORA22-201ENST00000383907 134 ntBASIC1.78□□□□□ -2.12
SOX9P48436 Y_RNA.507-201ENST00000384500 99 ntBASIC1.78□□□□□ -2.12
SOX9P48436 MRPL35P3-201ENST00000421557 364 ntBASIC1.78□□□□□ -2.12
SOX9P48436 RPL39P34-201ENST00000477141 156 ntBASIC1.78□□□□□ -2.12
SOX9P48436 TRMT112P2-201ENST00000512910 132 ntBASIC1.78□□□□□ -2.12
SOX9P48436 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC1.78□□□□□ -2.12
SOX9P48436 FAM71BP1-201ENST00000604431 523 ntBASIC1.78□□□□□ -2.12
SOX9P48436 MIR502-201ENST00000606349 86 ntBASIC1.78□□□□□ -2.12
SOX9P48436 SEPT14P17-201ENST00000617978 177 ntBASIC1.78□□□□□ -2.12
SOX9P48436 MIR377-201ENST00000362145 69 ntBASIC1.77□□□□□ -2.13
SOX9P48436 Y_RNA.116-201ENST00000363292 103 ntBASIC1.77□□□□□ -2.13
SOX9P48436 Y_RNA.344-201ENST00000365381 112 ntBASIC1.77□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 14.9 ms