Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 RNU6-1187P-201ENST00000364771 110 ntBASIC0.99□□□□□ -2.25
SHMT1P34896 RNU6-449P-201ENST00000383914 107 ntBASIC0.99□□□□□ -2.25
SHMT1P34896 Y_RNA.430-201ENST00000384081 110 ntBASIC0.99□□□□□ -2.25
SHMT1P34896 RNU6-205P-201ENST00000390858 107 ntBASIC0.99□□□□□ -2.25
SHMT1P34896 Y_RNA.580-201ENST00000391004 95 ntBASIC0.99□□□□□ -2.25
SHMT1P34896 MTATP6P21-201ENST00000440681 189 ntBASIC0.99□□□□□ -2.25
SHMT1P34896 RNA5SP436-201ENST00000516020 115 ntBASIC0.99□□□□□ -2.25
SHMT1P34896 MIR3658-201ENST00000636291 56 ntBASIC0.99□□□□□ -2.25
SHMT1P34896 Y_RNA.150-201ENST00000363562 102 ntBASIC0.98□□□□□ -2.25
SHMT1P34896 Y_RNA.497-201ENST00000384447 98 ntBASIC0.98□□□□□ -2.25
SHMT1P34896 MIR942-201ENST00000401111 86 ntBASIC0.98□□□□□ -2.25
SHMT1P34896 RNU6-994P-201ENST00000410507 111 ntBASIC0.98□□□□□ -2.25
SHMT1P34896 RNU6-394P-201ENST00000410735 107 ntBASIC0.98□□□□□ -2.25
SHMT1P34896 AC067940.1-201ENST00000458411 300 ntBASIC0.98□□□□□ -2.25
SHMT1P34896 RNU6-893P-201ENST00000458841 100 ntBASIC0.98□□□□□ -2.25
SHMT1P34896 RNU7-45P-201ENST00000459460 63 ntBASIC0.98□□□□□ -2.25
SHMT1P34896 AC021613.1-201ENST00000623880 111 ntBASIC0.98□□□□□ -2.25
SHMT1P34896 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.97□□□□□ -2.25
SHMT1P34896 SNORD18B-201ENST00000365659 72 ntBASIC0.97□□□□□ -2.25
SHMT1P34896 Y_RNA.555-201ENST00000384673 110 ntBASIC0.97□□□□□ -2.25
SHMT1P34896 Y_RNA.584-201ENST00000391090 114 ntBASIC0.97□□□□□ -2.25
SHMT1P34896 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.97□□□□□ -2.25
SHMT1P34896 AC104465.1-201ENST00000611365 139 ntBASIC0.97□□□□□ -2.25
SHMT1P34896 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.96□□□□□ -2.26
SHMT1P34896 RNY1P6-201ENST00000384193 109 ntBASIC0.96□□□□□ -2.26
SHMT1P34896 PCNPP3-201ENST00000393579 471 ntBASIC0.96□□□□□ -2.26
SHMT1P34896 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.96□□□□□ -2.26
SHMT1P34896 AC004941.2-201ENST00000427009 228 ntBASIC0.96□□□□□ -2.26
SHMT1P34896 RNU7-62P-201ENST00000458856 62 ntBASIC0.96□□□□□ -2.26
SHMT1P34896 RNA5SP236-201ENST00000516169 116 ntBASIC0.96□□□□□ -2.26
SHMT1P34896 AC112693.2-201ENST00000556538 232 ntBASIC0.96□□□□□ -2.26
SHMT1P34896 MIR4661-201ENST00000582720 75 ntBASIC0.96□□□□□ -2.26
SHMT1P34896 RNU6-94P-201ENST00000607728 107 ntBASIC0.96□□□□□ -2.26
SHMT1P34896 MIR6515-201ENST00000619843 57 ntBASIC0.96□□□□□ -2.26
SHMT1P34896 Y_RNA.778-201ENST00000620203 90 ntBASIC0.96□□□□□ -2.26
SHMT1P34896 RNU6-151P-201ENST00000364158 107 ntBASIC0.95□□□□□ -2.26
SHMT1P34896 Y_RNA.540-201ENST00000384638 111 ntBASIC0.95□□□□□ -2.26
SHMT1P34896 snoU13.2-201ENST00000459201 104 ntBASIC0.95□□□□□ -2.26
SHMT1P34896 U7.7-201ENST00000459276 60 ntBASIC0.95□□□□□ -2.26
SHMT1P34896 AC011603.4-201ENST00000611325 277 ntBASIC0.95□□□□□ -2.26
SHMT1P34896 AL136317.1-201ENST00000612653 226 ntBASIC0.95□□□□□ -2.26
SHMT1P34896 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC0.95□□□□□ -2.26
SHMT1P34896 RNU4-11P-201ENST00000365287 132 ntBASIC0.94□□□□□ -2.26
SHMT1P34896 SNORD116-18-201ENST00000383961 92 ntBASIC0.94□□□□□ -2.26
SHMT1P34896 MIR588-201ENST00000384900 83 ntBASIC0.94□□□□□ -2.26
SHMT1P34896 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.94□□□□□ -2.26
SHMT1P34896 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.94□□□□□ -2.26
SHMT1P34896 PDCD5P2-201ENST00000507570 312 ntBASIC0.94□□□□□ -2.26
SHMT1P34896 MIR3144-201ENST00000579460 79 ntBASIC0.94□□□□□ -2.26
SHMT1P34896 PVT1_3.1-201ENST00000620853 95 ntBASIC0.94□□□□□ -2.26
SHMT1P34896 MIR1-1-201ENST00000362147 71 ntBASIC0.93□□□□□ -2.26
SHMT1P34896 RNU6-349P-201ENST00000362402 107 ntBASIC0.93□□□□□ -2.26
SHMT1P34896 SNORA22.1-201ENST00000362701 134 ntBASIC0.93□□□□□ -2.26
SHMT1P34896 Y_RNA.120-201ENST00000363304 110 ntBASIC0.93□□□□□ -2.26
SHMT1P34896 Y_RNA.180-201ENST00000363867 113 ntBASIC0.93□□□□□ -2.26
SHMT1P34896 RNU6-934P-201ENST00000365154 107 ntBASIC0.93□□□□□ -2.26
SHMT1P34896 MIR613-201ENST00000385248 95 ntBASIC0.93□□□□□ -2.26
SHMT1P34896 SNORD12C-201ENST00000386307 89 ntBASIC0.93□□□□□ -2.26
SHMT1P34896 MIR18B-201ENST00000454574 71 ntBASIC0.93□□□□□ -2.26
SHMT1P34896 RNU6-351P-201ENST00000516097 100 ntBASIC0.93□□□□□ -2.26
SHMT1P34896 RNU6-1110P-201ENST00000516462 101 ntBASIC0.93□□□□□ -2.26
SHMT1P34896 MIR4714-201ENST00000580728 77 ntBASIC0.93□□□□□ -2.26
SHMT1P34896 MIR6740-201ENST00000618268 113 ntBASIC0.93□□□□□ -2.26
SHMT1P34896 MIR6841-201ENST00000637129 72 ntBASIC0.93□□□□□ -2.26
SHMT1P34896 SNORD114-2-201ENST00000363953 78 ntBASIC0.92□□□□□ -2.26
SHMT1P34896 Y_RNA.251-201ENST00000364551 99 ntBASIC0.92□□□□□ -2.26
SHMT1P34896 RNU6-1130P-201ENST00000365434 107 ntBASIC0.92□□□□□ -2.26
SHMT1P34896 RNU6-804P-201ENST00000384286 107 ntBASIC0.92□□□□□ -2.26
SHMT1P34896 Y_RNA.466-201ENST00000384294 113 ntBASIC0.92□□□□□ -2.26
SHMT1P34896 MIR513C-201ENST00000401352 84 ntBASIC0.92□□□□□ -2.26
SHMT1P34896 RNU6-1165P-201ENST00000410119 107 ntBASIC0.92□□□□□ -2.26
SHMT1P34896 POLR2J4-204ENST00000418424 324 ntBASIC0.92□□□□□ -2.26
SHMT1P34896 RPL39P28-201ENST00000465655 155 ntBASIC0.92□□□□□ -2.26
SHMT1P34896 RNA5SP255-201ENST00000516370 107 ntBASIC0.92□□□□□ -2.26
SHMT1P34896 AC025627.3-201ENST00000582078 182 ntBASIC0.92□□□□□ -2.26
SHMT1P34896 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.92□□□□□ -2.26
SHMT1P34896 Y_RNA.8-201ENST00000362353 102 ntBASIC0.91□□□□□ -2.26
SHMT1P34896 RNU4-16P-201ENST00000364737 141 ntBASIC0.91□□□□□ -2.26
SHMT1P34896 Y_RNA.464-201ENST00000384282 110 ntBASIC0.91□□□□□ -2.26
SHMT1P34896 SNORD89-201ENST00000390981 114 ntBASIC0.91□□□□□ -2.26
SHMT1P34896 AL603914.1-201ENST00000401964 204 ntBASIC0.91□□□□□ -2.26
SHMT1P34896 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.91□□□□□ -2.26
SHMT1P34896 MIR1827-201ENST00000408549 66 ntBASIC0.91□□□□□ -2.26
SHMT1P34896 RPS26P5-201ENST00000418544 335 ntBASIC0.91□□□□□ -2.26
SHMT1P34896 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.91□□□□□ -2.26
SHMT1P34896 RNU2-60P-201ENST00000517290 128 ntBASIC0.91□□□□□ -2.26
SHMT1P34896 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.91□□□□□ -2.26
SHMT1P34896 RNU6-690P-201ENST00000365242 106 ntBASIC0.9□□□□□ -2.27
SHMT1P34896 Y_RNA.398-201ENST00000383952 99 ntBASIC0.9□□□□□ -2.27
SHMT1P34896 MIR563-201ENST00000385080 79 ntBASIC0.9□□□□□ -2.27
SHMT1P34896 MIR100-201ENST00000385259 80 ntBASIC0.9□□□□□ -2.27
SHMT1P34896 RNU6-907P-201ENST00000390924 102 ntBASIC0.9□□□□□ -2.27
SHMT1P34896 Y_RNA.690-201ENST00000516603 95 ntBASIC0.9□□□□□ -2.27
SHMT1P34896 Y_RNA.400-201ENST00000383963 111 ntBASIC0.89□□□□□ -2.27
SHMT1P34896 MT-TF-201ENST00000387314 71 ntBASIC0.89□□□□□ -2.27
SHMT1P34896 RNA5SP237-201ENST00000410414 113 ntBASIC0.89□□□□□ -2.27
SHMT1P34896 RNA5SP144-201ENST00000410846 116 ntBASIC0.89□□□□□ -2.27
SHMT1P34896 SNORD83.1-201ENST00000411362 77 ntBASIC0.89□□□□□ -2.27
SHMT1P34896 AL022718.1-201ENST00000412004 84 ntBASIC0.89□□□□□ -2.27
SHMT1P34896 snoU13.21-201ENST00000459368 105 ntBASIC0.89□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 176.7 ms