Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 PDCD5P2-201ENST00000507570 312 ntBASIC0.96□□□□□ -2.26
HOXC9P31274 SCARNA15-202ENST00000516881 127 ntBASIC0.96□□□□□ -2.26
HOXC9P31274 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.96□□□□□ -2.26
HOXC9P31274 AC242498.1-201ENST00000604134 111 ntBASIC0.96□□□□□ -2.26
HOXC9P31274 Y_RNA.168-201ENST00000363740 102 ntBASIC0.95□□□□□ -2.26
HOXC9P31274 RNU6-818P-201ENST00000364837 108 ntBASIC0.95□□□□□ -2.26
HOXC9P31274 SNORA75.5-201ENST00000391291 81 ntBASIC0.95□□□□□ -2.26
HOXC9P31274 RNU6-588P-201ENST00000410281 105 ntBASIC0.95□□□□□ -2.26
HOXC9P31274 RNU6-602P-201ENST00000411155 105 ntBASIC0.95□□□□□ -2.26
HOXC9P31274 RNU7-62P-201ENST00000458856 62 ntBASIC0.95□□□□□ -2.26
HOXC9P31274 snoU13.21-201ENST00000459368 105 ntBASIC0.95□□□□□ -2.26
HOXC9P31274 AC004812.1-201ENST00000540773 146 ntBASIC0.95□□□□□ -2.26
HOXC9P31274 AC104465.1-201ENST00000611365 139 ntBASIC0.95□□□□□ -2.26
HOXC9P31274 MIR6717-201ENST00000622747 73 ntBASIC0.95□□□□□ -2.26
HOXC9P31274 MIR6866-201ENST00000638146 69 ntBASIC0.95□□□□□ -2.26
HOXC9P31274 AL391516.1-201ENST00000554380 2449 ntBASIC0.95□□□□□ -2.26
HOXC9P31274 MIR377-201ENST00000362145 69 ntBASIC0.94□□□□□ -2.26
HOXC9P31274 RNA5SP325-201ENST00000363756 130 ntBASIC0.94□□□□□ -2.26
HOXC9P31274 SNORA20-201ENST00000384662 132 ntBASIC0.94□□□□□ -2.26
HOXC9P31274 MIR216A-201ENST00000385063 110 ntBASIC0.94□□□□□ -2.26
HOXC9P31274 SNORD89-201ENST00000390981 114 ntBASIC0.94□□□□□ -2.26
HOXC9P31274 SNORA26.6-201ENST00000391256 115 ntBASIC0.94□□□□□ -2.26
HOXC9P31274 RPS3AP1-201ENST00000413190 320 ntBASIC0.94□□□□□ -2.26
HOXC9P31274 AC015818.7-201ENST00000428754 109 ntBASIC0.94□□□□□ -2.26
HOXC9P31274 FABP5P4-201ENST00000437203 171 ntBASIC0.94□□□□□ -2.26
HOXC9P31274 AC087499.7-201ENST00000441958 109 ntBASIC0.94□□□□□ -2.26
HOXC9P31274 MIR4661-201ENST00000582720 75 ntBASIC0.94□□□□□ -2.26
HOXC9P31274 Y_RNA.150-201ENST00000363562 102 ntBASIC0.93□□□□□ -2.26
HOXC9P31274 Y_RNA.205-201ENST00000364128 113 ntBASIC0.93□□□□□ -2.26
HOXC9P31274 SNORD12C-201ENST00000386307 89 ntBASIC0.93□□□□□ -2.26
HOXC9P31274 SNORD83.1-201ENST00000411362 77 ntBASIC0.93□□□□□ -2.26
HOXC9P31274 MIR3671-201ENST00000580455 88 ntBASIC0.93□□□□□ -2.26
HOXC9P31274 DNAJC19P2-201ENST00000593340 302 ntBASIC0.93□□□□□ -2.26
HOXC9P31274 MIR6740-201ENST00000618268 113 ntBASIC0.93□□□□□ -2.26
HOXC9P31274 Y_RNA.270-201ENST00000364693 104 ntBASIC0.92□□□□□ -2.26
HOXC9P31274 Y_RNA.272-201ENST00000364696 102 ntBASIC0.92□□□□□ -2.26
HOXC9P31274 RNY1P4-201ENST00000384595 115 ntBASIC0.92□□□□□ -2.26
HOXC9P31274 MIR936-201ENST00000401264 98 ntBASIC0.92□□□□□ -2.26
HOXC9P31274 RNA5SP261-201ENST00000410536 106 ntBASIC0.92□□□□□ -2.26
HOXC9P31274 MIR3152-201ENST00000579801 74 ntBASIC0.92□□□□□ -2.26
HOXC9P31274 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC0.92□□□□□ -2.26
HOXC9P31274 uc_338.6-201ENST00000613544 171 ntBASIC0.92□□□□□ -2.26
HOXC9P31274 AC010332.2-201ENST00000613083 1904 ntBASIC0.91□□□□□ -2.26
HOXC9P31274 SNORA22-201ENST00000383907 134 ntBASIC0.91□□□□□ -2.26
HOXC9P31274 SNORA22C-201ENST00000384614 134 ntBASIC0.91□□□□□ -2.26
HOXC9P31274 MIR588-201ENST00000384900 83 ntBASIC0.91□□□□□ -2.26
HOXC9P31274 MIR100-201ENST00000385259 80 ntBASIC0.91□□□□□ -2.26
HOXC9P31274 MIR3646-201ENST00000578301 84 ntBASIC0.91□□□□□ -2.26
HOXC9P31274 AC021613.1-201ENST00000623880 111 ntBASIC0.91□□□□□ -2.26
HOXC9P31274 Y_RNA.8-201ENST00000362353 102 ntBASIC0.9□□□□□ -2.27
HOXC9P31274 Y_RNA.441-201ENST00000384123 112 ntBASIC0.9□□□□□ -2.27
HOXC9P31274 Y_RNA.497-201ENST00000384447 98 ntBASIC0.9□□□□□ -2.27
HOXC9P31274 RNU6-1237P-201ENST00000384777 107 ntBASIC0.9□□□□□ -2.27
HOXC9P31274 RNU6-1319P-201ENST00000390855 104 ntBASIC0.9□□□□□ -2.27
HOXC9P31274 RNU6-747P-201ENST00000390928 104 ntBASIC0.9□□□□□ -2.27
HOXC9P31274 RNU6-241P-201ENST00000391148 104 ntBASIC0.9□□□□□ -2.27
HOXC9P31274 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.9□□□□□ -2.27
HOXC9P31274 RNU6-1135P-201ENST00000411083 103 ntBASIC0.9□□□□□ -2.27
HOXC9P31274 RNU6-177P-201ENST00000411257 104 ntBASIC0.9□□□□□ -2.27
HOXC9P31274 RNU7-121P-201ENST00000516604 62 ntBASIC0.9□□□□□ -2.27
HOXC9P31274 RNU6-794P-201ENST00000517261 64 ntBASIC0.9□□□□□ -2.27
HOXC9P31274 MIR4771-2-201ENST00000577758 74 ntBASIC0.9□□□□□ -2.27
HOXC9P31274 MIR4771-1-201ENST00000582617 74 ntBASIC0.9□□□□□ -2.27
HOXC9P31274 MIR1-1-201ENST00000362147 71 ntBASIC0.89□□□□□ -2.27
HOXC9P31274 SNORA22.1-201ENST00000362701 134 ntBASIC0.89□□□□□ -2.27
HOXC9P31274 RNY1P11-201ENST00000363759 113 ntBASIC0.89□□□□□ -2.27
HOXC9P31274 RNU6-151P-201ENST00000364158 107 ntBASIC0.89□□□□□ -2.27
HOXC9P31274 RNU6-934P-201ENST00000365154 107 ntBASIC0.89□□□□□ -2.27
HOXC9P31274 RNU6-580P-201ENST00000365159 107 ntBASIC0.89□□□□□ -2.27
HOXC9P31274 RNU4-11P-201ENST00000365287 132 ntBASIC0.89□□□□□ -2.27
HOXC9P31274 RNU6-1335P-201ENST00000365426 107 ntBASIC0.89□□□□□ -2.27
HOXC9P31274 SNORD116-18-201ENST00000383961 92 ntBASIC0.89□□□□□ -2.27
HOXC9P31274 RNY1P6-201ENST00000384193 109 ntBASIC0.89□□□□□ -2.27
HOXC9P31274 RNA5SP193-201ENST00000410353 107 ntBASIC0.89□□□□□ -2.27
HOXC9P31274 AC108059.2-201ENST00000434626 151 ntBASIC0.89□□□□□ -2.27
HOXC9P31274 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.89□□□□□ -2.27
HOXC9P31274 RNU6-1130P-201ENST00000365434 107 ntBASIC0.88□□□□□ -2.27
HOXC9P31274 RNU6-1165P-201ENST00000410119 107 ntBASIC0.88□□□□□ -2.27
HOXC9P31274 POLR2J4-204ENST00000418424 324 ntBASIC0.88□□□□□ -2.27
HOXC9P31274 snoU13.2-201ENST00000459201 104 ntBASIC0.88□□□□□ -2.27
HOXC9P31274 AC113410.1-201ENST00000505029 247 ntBASIC0.88□□□□□ -2.27
HOXC9P31274 ACA64.5-201ENST00000516207 127 ntBASIC0.88□□□□□ -2.27
HOXC9P31274 RNA5SP255-201ENST00000516370 107 ntBASIC0.88□□□□□ -2.27
HOXC9P31274 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.88□□□□□ -2.27
HOXC9P31274 AC013244.2-201ENST00000603396 103 ntBASIC0.88□□□□□ -2.27
HOXC9P31274 AL590095.2-201ENST00000604136 117 ntBASIC0.88□□□□□ -2.27
HOXC9P31274 FTX_2.1-201ENST00000618816 94 ntBASIC0.88□□□□□ -2.27
HOXC9P31274 RNA5SP499-201ENST00000363982 119 ntBASIC0.87□□□□□ -2.27
HOXC9P31274 RNU6-804P-201ENST00000384286 107 ntBASIC0.87□□□□□ -2.27
HOXC9P31274 Y_RNA.584-201ENST00000391090 114 ntBASIC0.87□□□□□ -2.27
HOXC9P31274 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.87□□□□□ -2.27
HOXC9P31274 MIR1827-201ENST00000408549 66 ntBASIC0.87□□□□□ -2.27
HOXC9P31274 RNA5SP236-201ENST00000516169 116 ntBASIC0.87□□□□□ -2.27
HOXC9P31274 AC112693.2-201ENST00000556538 232 ntBASIC0.87□□□□□ -2.27
HOXC9P31274 RNU1-36P-201ENST00000365130 165 ntBASIC0.86□□□□□ -2.27
HOXC9P31274 RNU6-690P-201ENST00000365242 106 ntBASIC0.86□□□□□ -2.27
HOXC9P31274 RNU6-449P-201ENST00000383914 107 ntBASIC0.86□□□□□ -2.27
HOXC9P31274 RNA5SP237-201ENST00000410414 113 ntBASIC0.86□□□□□ -2.27
HOXC9P31274 RPS26P5-201ENST00000418544 335 ntBASIC0.86□□□□□ -2.27
HOXC9P31274 MTATP6P21-201ENST00000440681 189 ntBASIC0.86□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 206.4 ms