Protein–RNA interactions for Protein: A6NCS4

NKX2-6, Homeobox protein Nkx-2.6, humanhuman

Predictions only

Length 301 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-6A6NCS4 SNORA79-201ENST00000408376 140 ntBASIC0.45□□□□□ -2.34
NKX2-6A6NCS4 MIR1197-201ENST00000408818 88 ntBASIC0.45□□□□□ -2.34
NKX2-6A6NCS4 Y_RNA.618-201ENST00000410949 107 ntBASIC0.45□□□□□ -2.34
NKX2-6A6NCS4 RNU7-56P-201ENST00000458744 62 ntBASIC0.45□□□□□ -2.34
NKX2-6A6NCS4 snoU13.2-201ENST00000459201 104 ntBASIC0.45□□□□□ -2.34
NKX2-6A6NCS4 RNU6-111P-201ENST00000517179 105 ntBASIC0.45□□□□□ -2.34
NKX2-6A6NCS4 IGHVIII-67-2-201ENST00000519849 88 ntBASIC0.45□□□□□ -2.34
NKX2-6A6NCS4 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.45□□□□□ -2.34
NKX2-6A6NCS4 MIR5197-201ENST00000583721 112 ntBASIC0.45□□□□□ -2.34
NKX2-6A6NCS4 AC062037.2-201ENST00000610137 73 ntBASIC0.45□□□□□ -2.34
NKX2-6A6NCS4 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.45□□□□□ -2.34
NKX2-6A6NCS4 AL109933.3-201ENST00000619095 188 ntBASIC0.45□□□□□ -2.34
NKX2-6A6NCS4 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.44□□□□□ -2.34
NKX2-6A6NCS4 MIR330-201ENST00000362196 94 ntBASIC0.44□□□□□ -2.34
NKX2-6A6NCS4 RNU6-103P-201ENST00000363686 107 ntBASIC0.44□□□□□ -2.34
NKX2-6A6NCS4 RNU6-978P-201ENST00000364371 103 ntBASIC0.44□□□□□ -2.34
NKX2-6A6NCS4 Y_RNA.307-201ENST00000365022 117 ntBASIC0.44□□□□□ -2.34
NKX2-6A6NCS4 MIR1302-3-201ENST00000408128 138 ntBASIC0.44□□□□□ -2.34
NKX2-6A6NCS4 AC114737.2-201ENST00000421583 173 ntBASIC0.44□□□□□ -2.34
NKX2-6A6NCS4 MTND3P2-201ENST00000438452 342 ntBASIC0.44□□□□□ -2.34
NKX2-6A6NCS4 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.44□□□□□ -2.34
NKX2-6A6NCS4 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.44□□□□□ -2.34
NKX2-6A6NCS4 MIR378D2-201ENST00000580636 98 ntBASIC0.44□□□□□ -2.34
NKX2-6A6NCS4 AL353621.2-201ENST00000605340 133 ntBASIC0.44□□□□□ -2.34
NKX2-6A6NCS4 AC243829.6-201ENST00000612652 106 ntBASIC0.44□□□□□ -2.34
NKX2-6A6NCS4 MIR30D-201ENST00000362283 70 ntBASIC0.43□□□□□ -2.34
NKX2-6A6NCS4 Y_RNA.20-201ENST00000362479 113 ntBASIC0.43□□□□□ -2.34
NKX2-6A6NCS4 Y_RNA.193-201ENST00000363979 102 ntBASIC0.43□□□□□ -2.34
NKX2-6A6NCS4 RNU4-16P-201ENST00000364737 141 ntBASIC0.43□□□□□ -2.34
NKX2-6A6NCS4 Y_RNA.447-201ENST00000384184 113 ntBASIC0.43□□□□□ -2.34
NKX2-6A6NCS4 Y_RNA.571-201ENST00000384753 98 ntBASIC0.43□□□□□ -2.34
NKX2-6A6NCS4 MIR573-201ENST00000384964 99 ntBASIC0.43□□□□□ -2.34
NKX2-6A6NCS4 RNU4-43P-201ENST00000410628 137 ntBASIC0.43□□□□□ -2.34
NKX2-6A6NCS4 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.43□□□□□ -2.34
NKX2-6A6NCS4 RNU7-185P-201ENST00000459215 60 ntBASIC0.43□□□□□ -2.34
NKX2-6A6NCS4 RNA5SP121-201ENST00000516537 101 ntBASIC0.43□□□□□ -2.34
NKX2-6A6NCS4 MIR3612-201ENST00000579753 87 ntBASIC0.43□□□□□ -2.34
NKX2-6A6NCS4 U6.106-201ENST00000636360 105 ntBASIC0.43□□□□□ -2.34
NKX2-6A6NCS4 MTND5P32-201ENST00000560711 1802 ntBASIC0.43□□□□□ -2.34
NKX2-6A6NCS4 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC0.42□□□□□ -2.34
NKX2-6A6NCS4 Y_RNA.85-201ENST00000363014 111 ntBASIC0.42□□□□□ -2.34
NKX2-6A6NCS4 RNU6-47P-201ENST00000383866 107 ntBASIC0.42□□□□□ -2.34
NKX2-6A6NCS4 RNU6-945P-201ENST00000383947 107 ntBASIC0.42□□□□□ -2.34
NKX2-6A6NCS4 Y_RNA.542-201ENST00000384641 111 ntBASIC0.42□□□□□ -2.34
NKX2-6A6NCS4 Y_RNA.556-201ENST00000384677 113 ntBASIC0.42□□□□□ -2.34
NKX2-6A6NCS4 MIR938-201ENST00000401216 83 ntBASIC0.42□□□□□ -2.34
NKX2-6A6NCS4 RNU7-102P-201ENST00000458948 62 ntBASIC0.42□□□□□ -2.34
NKX2-6A6NCS4 Y_RNA.681-201ENST00000516445 113 ntBASIC0.42□□□□□ -2.34
NKX2-6A6NCS4 SNORD116-25-201ENST00000516517 92 ntBASIC0.42□□□□□ -2.34
NKX2-6A6NCS4 RNU7-156P-201ENST00000517214 74 ntBASIC0.42□□□□□ -2.34
NKX2-6A6NCS4 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC0.42□□□□□ -2.34
NKX2-6A6NCS4 AL365205.2-201ENST00000594586 68 ntBASIC0.42□□□□□ -2.34
NKX2-6A6NCS4 AL162730.1-201ENST00000605734 292 ntBASIC0.42□□□□□ -2.34
NKX2-6A6NCS4 U4.1-201ENST00000620349 87 ntBASIC0.42□□□□□ -2.34
NKX2-6A6NCS4 MIR18A-201ENST00000362310 71 ntBASIC0.41□□□□□ -2.34
NKX2-6A6NCS4 SNORA20.1-201ENST00000364790 130 ntBASIC0.41□□□□□ -2.34
NKX2-6A6NCS4 RNU6-1292P-201ENST00000383856 107 ntBASIC0.41□□□□□ -2.34
NKX2-6A6NCS4 Y_RNA.412-201ENST00000384001 104 ntBASIC0.41□□□□□ -2.34
NKX2-6A6NCS4 RNU6-196P-201ENST00000384315 107 ntBASIC0.41□□□□□ -2.34
NKX2-6A6NCS4 RNU6-364P-201ENST00000384387 107 ntBASIC0.41□□□□□ -2.34
NKX2-6A6NCS4 RNU4-70P-201ENST00000384579 139 ntBASIC0.41□□□□□ -2.34
NKX2-6A6NCS4 MIR563-201ENST00000385080 79 ntBASIC0.41□□□□□ -2.34
NKX2-6A6NCS4 MIR125B2-201ENST00000385128 89 ntBASIC0.41□□□□□ -2.34
NKX2-6A6NCS4 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.41□□□□□ -2.34
NKX2-6A6NCS4 MIR18B-201ENST00000454574 71 ntBASIC0.41□□□□□ -2.34
NKX2-6A6NCS4 RNU7-80P-201ENST00000459562 61 ntBASIC0.41□□□□□ -2.34
NKX2-6A6NCS4 RNU4-54P-201ENST00000516428 129 ntBASIC0.41□□□□□ -2.34
NKX2-6A6NCS4 RNU6-1149P-201ENST00000516810 97 ntBASIC0.41□□□□□ -2.34
NKX2-6A6NCS4 AC022559.1-201ENST00000520905 205 ntBASIC0.41□□□□□ -2.34
NKX2-6A6NCS4 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.41□□□□□ -2.34
NKX2-6A6NCS4 Y_RNA.68-201ENST00000362881 102 ntBASIC0.4□□□□□ -2.35
NKX2-6A6NCS4 Y_RNA.178-201ENST00000363832 102 ntBASIC0.4□□□□□ -2.35
NKX2-6A6NCS4 RNU6-702P-201ENST00000364982 107 ntBASIC0.4□□□□□ -2.35
NKX2-6A6NCS4 VTRNA1-3-201ENST00000365645 89 ntBASIC0.4□□□□□ -2.35
NKX2-6A6NCS4 RNU6-643P-201ENST00000384018 107 ntBASIC0.4□□□□□ -2.35
NKX2-6A6NCS4 RNU6-1319P-201ENST00000390855 104 ntBASIC0.4□□□□□ -2.35
NKX2-6A6NCS4 RNU6-747P-201ENST00000390928 104 ntBASIC0.4□□□□□ -2.35
NKX2-6A6NCS4 RNU6-679P-201ENST00000391003 106 ntBASIC0.4□□□□□ -2.35
NKX2-6A6NCS4 RNU6-241P-201ENST00000391148 104 ntBASIC0.4□□□□□ -2.35
NKX2-6A6NCS4 SNORD58.1-201ENST00000391313 66 ntBASIC0.4□□□□□ -2.35
NKX2-6A6NCS4 MIR1257-201ENST00000408490 117 ntBASIC0.4□□□□□ -2.35
NKX2-6A6NCS4 RNU6-177P-201ENST00000411257 104 ntBASIC0.4□□□□□ -2.35
NKX2-6A6NCS4 SCARNA15-202ENST00000516881 127 ntBASIC0.4□□□□□ -2.35
NKX2-6A6NCS4 MRPS18CP4-201ENST00000535821 231 ntBASIC0.4□□□□□ -2.35
NKX2-6A6NCS4 MIR3149-201ENST00000584629 83 ntBASIC0.4□□□□□ -2.35
NKX2-6A6NCS4 RNA5SP257-201ENST00000363023 116 ntBASIC0.39□□□□□ -2.35
NKX2-6A6NCS4 RNU6-918P-201ENST00000391219 106 ntBASIC0.39□□□□□ -2.35
NKX2-6A6NCS4 SNORD93-201ENST00000408813 74 ntBASIC0.39□□□□□ -2.35
NKX2-6A6NCS4 Y_RNA.617-201ENST00000410920 90 ntBASIC0.39□□□□□ -2.35
NKX2-6A6NCS4 RNA5SP127-201ENST00000411051 133 ntBASIC0.39□□□□□ -2.35
NKX2-6A6NCS4 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC0.39□□□□□ -2.35
NKX2-6A6NCS4 RNU6-1023P-201ENST00000516137 106 ntBASIC0.39□□□□□ -2.35
NKX2-6A6NCS4 RNU6-1258P-201ENST00000516911 111 ntBASIC0.39□□□□□ -2.35
NKX2-6A6NCS4 RNU7-70P-201ENST00000516941 66 ntBASIC0.39□□□□□ -2.35
NKX2-6A6NCS4 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC0.39□□□□□ -2.35
NKX2-6A6NCS4 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.39□□□□□ -2.35
NKX2-6A6NCS4 AC021613.1-201ENST00000623880 111 ntBASIC0.39□□□□□ -2.35
NKX2-6A6NCS4 Y_RNA.121-201ENST00000363309 113 ntBASIC0.38□□□□□ -2.35
NKX2-6A6NCS4 RNU6-275P-201ENST00000364910 107 ntBASIC0.38□□□□□ -2.35
NKX2-6A6NCS4 Y_RNA.454-201ENST00000384224 113 ntBASIC0.38□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 11.9 ms