Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 Y_RNA.510-201ENST00000384511 114 ntBASIC3.04□□□□□ -1.92
PCDHB3Q9Y5E6 RNU6-296P-201ENST00000384608 107 ntBASIC3.04□□□□□ -1.92
PCDHB3Q9Y5E6 RNU6-587P-201ENST00000391282 106 ntBASIC3.04□□□□□ -1.92
PCDHB3Q9Y5E6 BX276092.1-201ENST00000427368 251 ntBASIC3.04□□□□□ -1.92
PCDHB3Q9Y5E6 HSPE1P24-201ENST00000450782 238 ntBASIC3.04□□□□□ -1.92
PCDHB3Q9Y5E6 SUB1P4-201ENST00000566062 339 ntBASIC3.04□□□□□ -1.92
PCDHB3Q9Y5E6 MIR4298-201ENST00000584380 73 ntBASIC3.04□□□□□ -1.92
PCDHB3Q9Y5E6 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.04□□□□□ -1.92
PCDHB3Q9Y5E6 MIR4251-201ENST00000635819 61 ntBASIC3.04□□□□□ -1.92
PCDHB3Q9Y5E6 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
PCDHB3Q9Y5E6 RNU6-112P-201ENST00000363599 104 ntBASIC3.03□□□□□ -1.92
PCDHB3Q9Y5E6 Y_RNA.264-201ENST00000364665 102 ntBASIC3.03□□□□□ -1.92
PCDHB3Q9Y5E6 RNU1-91P-201ENST00000364746 163 ntBASIC3.03□□□□□ -1.92
PCDHB3Q9Y5E6 RNU6-132P-201ENST00000383863 107 ntBASIC3.03□□□□□ -1.92
PCDHB3Q9Y5E6 AC022018.1-201ENST00000430685 241 ntBASIC3.03□□□□□ -1.92
PCDHB3Q9Y5E6 HMGN2P3-201ENST00000433603 273 ntBASIC3.03□□□□□ -1.92
PCDHB3Q9Y5E6 HMGN2P5-201ENST00000436882 273 ntBASIC3.03□□□□□ -1.92
PCDHB3Q9Y5E6 UBE2DNL-203ENST00000474922 222 ntBASIC3.03□□□□□ -1.92
PCDHB3Q9Y5E6 MIR3126-201ENST00000577443 74 ntBASIC3.03□□□□□ -1.92
PCDHB3Q9Y5E6 MIR3064-201ENST00000581130 66 ntBASIC3.03□□□□□ -1.92
PCDHB3Q9Y5E6 AC104996.3-201ENST00000590718 94 ntBASIC3.03□□□□□ -1.92
PCDHB3Q9Y5E6 U6.109-201ENST00000636749 87 ntBASIC3.03□□□□□ -1.92
PCDHB3Q9Y5E6 MIR622-201ENST00000638396 96 ntBASIC3.03□□□□□ -1.92
PCDHB3Q9Y5E6 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.03□□□□□ -1.92
PCDHB3Q9Y5E6 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.03□□□□□ -1.92
PCDHB3Q9Y5E6 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.03□□□□□ -1.92
PCDHB3Q9Y5E6 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.02□□□□□ -1.93
PCDHB3Q9Y5E6 SNORA5B-201ENST00000363786 132 ntBASIC3.02□□□□□ -1.93
PCDHB3Q9Y5E6 RNU6-540P-201ENST00000384622 101 ntBASIC3.02□□□□□ -1.93
PCDHB3Q9Y5E6 SNORA48.1-201ENST00000390879 135 ntBASIC3.02□□□□□ -1.93
PCDHB3Q9Y5E6 SNORD30.1-201ENST00000391309 70 ntBASIC3.02□□□□□ -1.93
PCDHB3Q9Y5E6 MIR887-201ENST00000401258 79 ntBASIC3.02□□□□□ -1.93
PCDHB3Q9Y5E6 RNA5SP445-201ENST00000515889 115 ntBASIC3.02□□□□□ -1.93
PCDHB3Q9Y5E6 RNU6-75P-201ENST00000515944 104 ntBASIC3.02□□□□□ -1.93
PCDHB3Q9Y5E6 RNA5SP481-201ENST00000516814 122 ntBASIC3.02□□□□□ -1.93
PCDHB3Q9Y5E6 MIR3935-201ENST00000583472 104 ntBASIC3.02□□□□□ -1.93
PCDHB3Q9Y5E6 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
PCDHB3Q9Y5E6 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.01□□□□□ -1.93
PCDHB3Q9Y5E6 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
PCDHB3Q9Y5E6 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.01□□□□□ -1.93
PCDHB3Q9Y5E6 RNU6-208P-201ENST00000362431 107 ntBASIC3.01□□□□□ -1.93
PCDHB3Q9Y5E6 SNORD36A-201ENST00000362874 73 ntBASIC3.01□□□□□ -1.93
PCDHB3Q9Y5E6 SNORA71.1-201ENST00000364523 117 ntBASIC3.01□□□□□ -1.93
PCDHB3Q9Y5E6 RNU1-148P-201ENST00000384472 162 ntBASIC3.01□□□□□ -1.93
PCDHB3Q9Y5E6 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC3.01□□□□□ -1.93
PCDHB3Q9Y5E6 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.01□□□□□ -1.93
PCDHB3Q9Y5E6 Y_RNA.596-201ENST00000410462 109 ntBASIC3.01□□□□□ -1.93
PCDHB3Q9Y5E6 RNA5SP344-201ENST00000411081 104 ntBASIC3.01□□□□□ -1.93
PCDHB3Q9Y5E6 AC074348.1-201ENST00000426503 132 ntBASIC3.01□□□□□ -1.93
PCDHB3Q9Y5E6 AC104389.3-201ENST00000445629 235 ntBASIC3.01□□□□□ -1.93
PCDHB3Q9Y5E6 RNU6-303P-201ENST00000517091 106 ntBASIC3.01□□□□□ -1.93
PCDHB3Q9Y5E6 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC3.01□□□□□ -1.93
PCDHB3Q9Y5E6 AL137790.1-201ENST00000634283 177 ntBASIC3.01□□□□□ -1.93
PCDHB3Q9Y5E6 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.01□□□□□ -1.93
PCDHB3Q9Y5E6 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
PCDHB3Q9Y5E6 SNORA80A-201ENST00000363922 136 ntBASIC3□□□□□ -1.93
PCDHB3Q9Y5E6 RNU6-800P-201ENST00000384473 103 ntBASIC3□□□□□ -1.93
PCDHB3Q9Y5E6 RNU6ATAC42P-201ENST00000408637 95 ntBASIC3□□□□□ -1.93
PCDHB3Q9Y5E6 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3□□□□□ -1.93
PCDHB3Q9Y5E6 RNU7-26P-201ENST00000458980 63 ntBASIC3□□□□□ -1.93
PCDHB3Q9Y5E6 AC067747.1-201ENST00000608026 250 ntBASIC3□□□□□ -1.93
PCDHB3Q9Y5E6 U6.111-201ENST00000636093 83 ntBASIC3□□□□□ -1.93
PCDHB3Q9Y5E6 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3□□□□□ -1.93
PCDHB3Q9Y5E6 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3□□□□□ -1.93
PCDHB3Q9Y5E6 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC3□□□□□ -1.93
PCDHB3Q9Y5E6 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
PCDHB3Q9Y5E6 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
PCDHB3Q9Y5E6 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
PCDHB3Q9Y5E6 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
PCDHB3Q9Y5E6 Y_RNA.283-201ENST00000364798 112 ntBASIC2.99□□□□□ -1.93
PCDHB3Q9Y5E6 Y_RNA.491-201ENST00000384417 107 ntBASIC2.99□□□□□ -1.93
PCDHB3Q9Y5E6 SNORD15B-201ENST00000384714 146 ntBASIC2.99□□□□□ -1.93
PCDHB3Q9Y5E6 RNA5SP465-201ENST00000391195 109 ntBASIC2.99□□□□□ -1.93
PCDHB3Q9Y5E6 HMGN2P39-201ENST00000398005 273 ntBASIC2.99□□□□□ -1.93
PCDHB3Q9Y5E6 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.99□□□□□ -1.93
PCDHB3Q9Y5E6 AC015818.7-201ENST00000428754 109 ntBASIC2.99□□□□□ -1.93
PCDHB3Q9Y5E6 RPL23AP94-201ENST00000512518 302 ntBASIC2.99□□□□□ -1.93
PCDHB3Q9Y5E6 RNU7-41P-201ENST00000515917 61 ntBASIC2.99□□□□□ -1.93
PCDHB3Q9Y5E6 RNA5SP137-201ENST00000516833 135 ntBASIC2.99□□□□□ -1.93
PCDHB3Q9Y5E6 UBL5P2-201ENST00000583788 219 ntBASIC2.99□□□□□ -1.93
PCDHB3Q9Y5E6 AL357312.1-201ENST00000603879 298 ntBASIC2.99□□□□□ -1.93
PCDHB3Q9Y5E6 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
PCDHB3Q9Y5E6 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.99□□□□□ -1.93
PCDHB3Q9Y5E6 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.99□□□□□ -1.93
PCDHB3Q9Y5E6 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.99□□□□□ -1.93
PCDHB3Q9Y5E6 AL161722.3-201ENST00000605789 2983 ntBASIC2.98□□□□□ -1.93
PCDHB3Q9Y5E6 Y_RNA.119-201ENST00000363301 96 ntBASIC2.98□□□□□ -1.93
PCDHB3Q9Y5E6 SNORA44-201ENST00000384584 132 ntBASIC2.98□□□□□ -1.93
PCDHB3Q9Y5E6 MIR516A2-201ENST00000384888 90 ntBASIC2.98□□□□□ -1.93
PCDHB3Q9Y5E6 MIR516A1-201ENST00000385033 90 ntBASIC2.98□□□□□ -1.93
PCDHB3Q9Y5E6 AC244023.1-201ENST00000426884 112 ntBASIC2.98□□□□□ -1.93
PCDHB3Q9Y5E6 snoU13.2-201ENST00000459201 104 ntBASIC2.98□□□□□ -1.93
PCDHB3Q9Y5E6 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.98□□□□□ -1.93
PCDHB3Q9Y5E6 AC008885.1-201ENST00000514930 301 ntBASIC2.98□□□□□ -1.93
PCDHB3Q9Y5E6 AC242498.1-201ENST00000604134 111 ntBASIC2.98□□□□□ -1.93
PCDHB3Q9Y5E6 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.98□□□□□ -1.93
PCDHB3Q9Y5E6 U8.9-201ENST00000365667 134 ntBASIC2.97□□□□□ -1.93
PCDHB3Q9Y5E6 MIR548U-201ENST00000390728 81 ntBASIC2.97□□□□□ -1.93
PCDHB3Q9Y5E6 RNU6-1254P-201ENST00000391266 104 ntBASIC2.97□□□□□ -1.93
PCDHB3Q9Y5E6 AC009474.2-201ENST00000451383 136 ntBASIC2.97□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 196.4 ms