Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 RNU7-45P-201ENST00000459460 63 ntBASIC2.28□□□□□ -2.04
USHBP1Q8N6Y0 SNORD123-201ENST00000459473 70 ntBASIC2.28□□□□□ -2.04
USHBP1Q8N6Y0 AC099513.1-201ENST00000490423 301 ntBASIC2.28□□□□□ -2.04
USHBP1Q8N6Y0 DNAJC19P9-201ENST00000555084 351 ntBASIC2.28□□□□□ -2.04
USHBP1Q8N6Y0 MIR4419B-201ENST00000577260 68 ntBASIC2.28□□□□□ -2.04
USHBP1Q8N6Y0 MIR424-201ENST00000362227 98 ntBASIC2.27□□□□□ -2.05
USHBP1Q8N6Y0 RNA5SP138-201ENST00000365098 114 ntBASIC2.27□□□□□ -2.05
USHBP1Q8N6Y0 SNORA6-201ENST00000384033 151 ntBASIC2.27□□□□□ -2.05
USHBP1Q8N6Y0 SNORA24-201ENST00000384096 131 ntBASIC2.27□□□□□ -2.05
USHBP1Q8N6Y0 RNU6-360P-201ENST00000390944 104 ntBASIC2.27□□□□□ -2.05
USHBP1Q8N6Y0 ATP6V0E1P1-201ENST00000412537 226 ntBASIC2.27□□□□□ -2.05
USHBP1Q8N6Y0 RNU7-113P-201ENST00000459273 62 ntBASIC2.27□□□□□ -2.05
USHBP1Q8N6Y0 RNU6-109P-201ENST00000516364 107 ntBASIC2.27□□□□□ -2.05
USHBP1Q8N6Y0 RNU6-184P-201ENST00000516514 107 ntBASIC2.27□□□□□ -2.05
USHBP1Q8N6Y0 AC243994.1-201ENST00000618627 109 ntBASIC2.27□□□□□ -2.05
USHBP1Q8N6Y0 SNORD115-2-201ENST00000362842 82 ntBASIC2.26□□□□□ -2.05
USHBP1Q8N6Y0 SNORD115-20-201ENST00000365099 82 ntBASIC2.26□□□□□ -2.05
USHBP1Q8N6Y0 Y_RNA.507-201ENST00000384500 99 ntBASIC2.26□□□□□ -2.05
USHBP1Q8N6Y0 MIR526A1-201ENST00000384897 85 ntBASIC2.26□□□□□ -2.05
USHBP1Q8N6Y0 RNU4-69P-201ENST00000410677 143 ntBASIC2.26□□□□□ -2.05
USHBP1Q8N6Y0 RNA5SP100-201ENST00000410903 110 ntBASIC2.26□□□□□ -2.05
USHBP1Q8N6Y0 RNA5SP59-201ENST00000410922 110 ntBASIC2.26□□□□□ -2.05
USHBP1Q8N6Y0 AC090255.1-201ENST00000495779 349 ntBASIC2.26□□□□□ -2.05
USHBP1Q8N6Y0 RNU6-904P-201ENST00000516206 101 ntBASIC2.26□□□□□ -2.05
USHBP1Q8N6Y0 5S_rRNA.3-201ENST00000517021 110 ntBASIC2.26□□□□□ -2.05
USHBP1Q8N6Y0 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.26□□□□□ -2.05
USHBP1Q8N6Y0 AC141557.1-201ENST00000540982 400 ntBASIC2.26□□□□□ -2.05
USHBP1Q8N6Y0 AL645939.4-201ENST00000604495 135 ntBASIC2.26□□□□□ -2.05
USHBP1Q8N6Y0 5S_rRNA.19-201ENST00000612131 110 ntBASIC2.26□□□□□ -2.05
USHBP1Q8N6Y0 5S_rRNA.18-201ENST00000621941 110 ntBASIC2.26□□□□□ -2.05
USHBP1Q8N6Y0 MIR2052-201ENST00000636055 55 ntBASIC2.26□□□□□ -2.05
USHBP1Q8N6Y0 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.26□□□□□ -2.05
USHBP1Q8N6Y0 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.25□□□□□ -2.05
USHBP1Q8N6Y0 AP000648.3-201ENST00000623539 4507 ntBASIC2.25□□□□□ -2.05
USHBP1Q8N6Y0 SNORD115-19-201ENST00000363098 82 ntBASIC2.25□□□□□ -2.05
USHBP1Q8N6Y0 SNORD115-18-201ENST00000363293 82 ntBASIC2.25□□□□□ -2.05
USHBP1Q8N6Y0 Y_RNA.171-201ENST00000363760 102 ntBASIC2.25□□□□□ -2.05
USHBP1Q8N6Y0 SNORD115-17-201ENST00000364612 82 ntBASIC2.25□□□□□ -2.05
USHBP1Q8N6Y0 SNORD28B-201ENST00000390993 75 ntBASIC2.25□□□□□ -2.05
USHBP1Q8N6Y0 SNORA19.1-201ENST00000410656 129 ntBASIC2.25□□□□□ -2.05
USHBP1Q8N6Y0 RNU7-73P-201ENST00000458743 63 ntBASIC2.25□□□□□ -2.05
USHBP1Q8N6Y0 MIR3618-201ENST00000580330 88 ntBASIC2.25□□□□□ -2.05
USHBP1Q8N6Y0 FAM106DP-201ENST00000586416 501 ntBASIC2.25□□□□□ -2.05
USHBP1Q8N6Y0 MIR502-201ENST00000606349 86 ntBASIC2.25□□□□□ -2.05
USHBP1Q8N6Y0 AC095038.3-201ENST00000634439 195 ntBASIC2.25□□□□□ -2.05
USHBP1Q8N6Y0 SNORA22.1-201ENST00000362701 134 ntBASIC2.24□□□□□ -2.05
USHBP1Q8N6Y0 RNU6-363P-201ENST00000362895 105 ntBASIC2.24□□□□□ -2.05
USHBP1Q8N6Y0 RNU4-36P-201ENST00000364294 144 ntBASIC2.24□□□□□ -2.05
USHBP1Q8N6Y0 Y_RNA.430-201ENST00000384081 110 ntBASIC2.24□□□□□ -2.05
USHBP1Q8N6Y0 Y_RNA.537-201ENST00000384626 109 ntBASIC2.24□□□□□ -2.05
USHBP1Q8N6Y0 SNORA26.6-201ENST00000391256 115 ntBASIC2.24□□□□□ -2.05
USHBP1Q8N6Y0 RNU7-95P-201ENST00000459222 64 ntBASIC2.24□□□□□ -2.05
USHBP1Q8N6Y0 RNU6-1258P-201ENST00000516911 111 ntBASIC2.24□□□□□ -2.05
USHBP1Q8N6Y0 DEFB131E-201ENST00000532329 154 ntBASIC2.24□□□□□ -2.05
USHBP1Q8N6Y0 FAM71BP1-201ENST00000604431 523 ntBASIC2.24□□□□□ -2.05
USHBP1Q8N6Y0 MIR4791-201ENST00000607666 84 ntBASIC2.24□□□□□ -2.05
USHBP1Q8N6Y0 MIR6717-201ENST00000622747 73 ntBASIC2.24□□□□□ -2.05
USHBP1Q8N6Y0 RNU6-294P-201ENST00000364999 102 ntBASIC2.23□□□□□ -2.05
USHBP1Q8N6Y0 MTATP8P2-201ENST00000435212 202 ntBASIC2.23□□□□□ -2.05
USHBP1Q8N6Y0 AC113410.1-201ENST00000505029 247 ntBASIC2.23□□□□□ -2.05
USHBP1Q8N6Y0 RNA5SP33-201ENST00000516687 98 ntBASIC2.23□□□□□ -2.05
USHBP1Q8N6Y0 RNU6-158P-201ENST00000517104 100 ntBASIC2.23□□□□□ -2.05
USHBP1Q8N6Y0 MIR4255-201ENST00000579351 72 ntBASIC2.23□□□□□ -2.05
USHBP1Q8N6Y0 MIR4448-201ENST00000584360 86 ntBASIC2.23□□□□□ -2.05
USHBP1Q8N6Y0 AL513534.2-201ENST00000603836 250 ntBASIC2.23□□□□□ -2.05
USHBP1Q8N6Y0 AL359821.1-201ENST00000605519 182 ntBASIC2.23□□□□□ -2.05
USHBP1Q8N6Y0 AL020996.3-201ENST00000606617 222 ntBASIC2.23□□□□□ -2.05
USHBP1Q8N6Y0 Y_RNA.773-201ENST00000607168 90 ntBASIC2.23□□□□□ -2.05
USHBP1Q8N6Y0 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.22□□□□□ -2.05
USHBP1Q8N6Y0 Y_RNA.93-201ENST00000363066 109 ntBASIC2.22□□□□□ -2.05
USHBP1Q8N6Y0 RNU6-1099P-201ENST00000363533 107 ntBASIC2.22□□□□□ -2.05
USHBP1Q8N6Y0 SNORA74.3-201ENST00000517108 154 ntBASIC2.22□□□□□ -2.05
USHBP1Q8N6Y0 MIR5694-201ENST00000581190 76 ntBASIC2.22□□□□□ -2.05
USHBP1Q8N6Y0 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC2.22□□□□□ -2.05
USHBP1Q8N6Y0 MIR6841-201ENST00000637129 72 ntBASIC2.22□□□□□ -2.05
USHBP1Q8N6Y0 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC2.22□□□□□ -2.05
USHBP1Q8N6Y0 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.21□□□□□ -2.06
USHBP1Q8N6Y0 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC2.21□□□□□ -2.06
USHBP1Q8N6Y0 Y_RNA.155-201ENST00000363632 101 ntBASIC2.21□□□□□ -2.06
USHBP1Q8N6Y0 RNU6-1131P-201ENST00000364955 107 ntBASIC2.21□□□□□ -2.06
USHBP1Q8N6Y0 RNU6-409P-201ENST00000384114 104 ntBASIC2.21□□□□□ -2.06
USHBP1Q8N6Y0 RNU4-52P-201ENST00000384209 138 ntBASIC2.21□□□□□ -2.06
USHBP1Q8N6Y0 RNU6-913P-201ENST00000390913 95 ntBASIC2.21□□□□□ -2.06
USHBP1Q8N6Y0 RNU6-733P-201ENST00000410759 104 ntBASIC2.21□□□□□ -2.06
USHBP1Q8N6Y0 snoU13.16-201ENST00000459350 104 ntBASIC2.21□□□□□ -2.06
USHBP1Q8N6Y0 SNORA31.17-201ENST00000516953 127 ntBASIC2.21□□□□□ -2.06
USHBP1Q8N6Y0 MIR1255B1-201ENST00000636325 63 ntBASIC2.21□□□□□ -2.06
USHBP1Q8N6Y0 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC2.21□□□□□ -2.06
USHBP1Q8N6Y0 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
USHBP1Q8N6Y0 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.2□□□□□ -2.06
USHBP1Q8N6Y0 RNA5SP276-201ENST00000362580 94 ntBASIC2.2□□□□□ -2.06
USHBP1Q8N6Y0 RNU4-67P-201ENST00000364569 141 ntBASIC2.2□□□□□ -2.06
USHBP1Q8N6Y0 RNA5SP37-201ENST00000365420 130 ntBASIC2.2□□□□□ -2.06
USHBP1Q8N6Y0 Y_RNA.470-201ENST00000384307 117 ntBASIC2.2□□□□□ -2.06
USHBP1Q8N6Y0 SNORD77B-201ENST00000391112 67 ntBASIC2.2□□□□□ -2.06
USHBP1Q8N6Y0 MIR1302-4-201ENST00000408701 150 ntBASIC2.2□□□□□ -2.06
USHBP1Q8N6Y0 Y_RNA.601-201ENST00000410500 113 ntBASIC2.2□□□□□ -2.06
USHBP1Q8N6Y0 HMGN2P38-201ENST00000423806 265 ntBASIC2.2□□□□□ -2.06
USHBP1Q8N6Y0 RPL23AP6-201ENST00000446637 472 ntBASIC2.2□□□□□ -2.06
USHBP1Q8N6Y0 SCARNA23-201ENST00000516060 130 ntBASIC2.2□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 198.8 ms