Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 RNY1P13-201ENST00000365030 105 ntBASIC-0.84□□□□□ -2.54
CHD9Q3L8U1 Y_RNA.364-201ENST00000365532 101 ntBASIC-0.84□□□□□ -2.54
CHD9Q3L8U1 RNU6-900P-201ENST00000384498 102 ntBASIC-0.84□□□□□ -2.54
CHD9Q3L8U1 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC-0.84□□□□□ -2.54
CHD9Q3L8U1 AC023449.1-201ENST00000454464 154 ntBASIC-0.84□□□□□ -2.54
CHD9Q3L8U1 RNU6-625P-201ENST00000459412 107 ntBASIC-0.84□□□□□ -2.54
CHD9Q3L8U1 MIR4424-201ENST00000585257 86 ntBASIC-0.84□□□□□ -2.54
CHD9Q3L8U1 MIR6863-201ENST00000636112 90 ntBASIC-0.84□□□□□ -2.54
CHD9Q3L8U1 U6.109-201ENST00000636749 87 ntBASIC-0.84□□□□□ -2.54
CHD9Q3L8U1 Y_RNA.223-201ENST00000364290 113 ntBASIC-0.84□□□□□ -2.54
CHD9Q3L8U1 RNU4-68P-201ENST00000364314 141 ntBASIC-0.84□□□□□ -2.54
CHD9Q3L8U1 RNU6-596P-201ENST00000365395 98 ntBASIC-0.84□□□□□ -2.54
CHD9Q3L8U1 RNU6-154P-201ENST00000384306 106 ntBASIC-0.84□□□□□ -2.54
CHD9Q3L8U1 Y_RNA.481-201ENST00000384373 102 ntBASIC-0.84□□□□□ -2.54
CHD9Q3L8U1 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC-0.84□□□□□ -2.54
CHD9Q3L8U1 MIR3145-201ENST00000580727 82 ntBASIC-0.84□□□□□ -2.54
CHD9Q3L8U1 AC011603.4-201ENST00000611325 277 ntBASIC-0.84□□□□□ -2.54
CHD9Q3L8U1 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-0.84□□□□□ -2.54
CHD9Q3L8U1 Y_RNA.7-201ENST00000362352 102 ntBASIC-0.85□□□□□ -2.55
CHD9Q3L8U1 RNA5SP405-201ENST00000363059 114 ntBASIC-0.85□□□□□ -2.55
CHD9Q3L8U1 Y_RNA.310-201ENST00000365063 113 ntBASIC-0.85□□□□□ -2.55
CHD9Q3L8U1 MIR206-201ENST00000384872 86 ntBASIC-0.85□□□□□ -2.55
CHD9Q3L8U1 RNU6-1250P-201ENST00000391218 107 ntBASIC-0.85□□□□□ -2.55
CHD9Q3L8U1 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC-0.85□□□□□ -2.55
CHD9Q3L8U1 RNU5B-6P-201ENST00000516765 68 ntBASIC-0.85□□□□□ -2.55
CHD9Q3L8U1 Y_RNA.244-201ENST00000364484 109 ntBASIC-0.85□□□□□ -2.55
CHD9Q3L8U1 Y_RNA.284-201ENST00000364806 102 ntBASIC-0.85□□□□□ -2.55
CHD9Q3L8U1 RNU6-282P-201ENST00000365357 103 ntBASIC-0.85□□□□□ -2.55
CHD9Q3L8U1 MIR190B-201ENST00000401119 79 ntBASIC-0.85□□□□□ -2.55
CHD9Q3L8U1 RNU6-588P-201ENST00000410281 105 ntBASIC-0.85□□□□□ -2.55
CHD9Q3L8U1 RNU6-1190P-201ENST00000410811 104 ntBASIC-0.85□□□□□ -2.55
CHD9Q3L8U1 RNU6-893P-201ENST00000458841 100 ntBASIC-0.85□□□□□ -2.55
CHD9Q3L8U1 AF246928.1-201ENST00000623768 87 ntBASIC-0.85□□□□□ -2.55
CHD9Q3L8U1 RNU6-653P-201ENST00000363074 106 ntBASIC-0.86□□□□□ -2.55
CHD9Q3L8U1 MIR548I2-201ENST00000408348 149 ntBASIC-0.86□□□□□ -2.55
CHD9Q3L8U1 USP9YP30-201ENST00000430729 455 ntBASIC-0.86□□□□□ -2.55
CHD9Q3L8U1 TRAJ51-201ENST00000504127 63 ntBASIC-0.86□□□□□ -2.55
CHD9Q3L8U1 RNU6-998P-201ENST00000515894 101 ntBASIC-0.86□□□□□ -2.55
CHD9Q3L8U1 AC069503.3-201ENST00000618674 145 ntBASIC-0.86□□□□□ -2.55
CHD9Q3L8U1 SNORA20-201ENST00000384662 132 ntBASIC-0.86□□□□□ -2.55
CHD9Q3L8U1 RNU6-1000P-201ENST00000391066 106 ntBASIC-0.86□□□□□ -2.55
CHD9Q3L8U1 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC-0.86□□□□□ -2.55
CHD9Q3L8U1 MTATP6P25-201ENST00000574491 261 ntBASIC-0.86□□□□□ -2.55
CHD9Q3L8U1 AC018645.2-201ENST00000609151 472 ntBASIC-0.86□□□□□ -2.55
CHD9Q3L8U1 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-0.86□□□□□ -2.55
CHD9Q3L8U1 WT1-AS_8.1-201ENST00000615200 275 ntBASIC-0.86□□□□□ -2.55
CHD9Q3L8U1 AC011476.5-201ENST00000615594 130 ntBASIC-0.86□□□□□ -2.55
CHD9Q3L8U1 RNU6-500P-201ENST00000362349 107 ntBASIC-0.86□□□□□ -2.55
CHD9Q3L8U1 RNU6-1209P-201ENST00000363655 107 ntBASIC-0.86□□□□□ -2.55
CHD9Q3L8U1 RNU4-20P-201ENST00000365601 151 ntBASIC-0.86□□□□□ -2.55
CHD9Q3L8U1 Y_RNA.512-201ENST00000384518 102 ntBASIC-0.86□□□□□ -2.55
CHD9Q3L8U1 RNU6-291P-201ENST00000384720 107 ntBASIC-0.86□□□□□ -2.55
CHD9Q3L8U1 SNORD64-201ENST00000386683 67 ntBASIC-0.86□□□□□ -2.55
CHD9Q3L8U1 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-0.86□□□□□ -2.55
CHD9Q3L8U1 SNORD78.2-201ENST00000391076 69 ntBASIC-0.86□□□□□ -2.55
CHD9Q3L8U1 RNU6-1156P-201ENST00000410365 100 ntBASIC-0.86□□□□□ -2.55
CHD9Q3L8U1 UBE2V1P12-201ENST00000503954 474 ntBASIC-0.86□□□□□ -2.55
CHD9Q3L8U1 RNU6-865P-201ENST00000364772 107 ntBASIC-0.87□□□□□ -2.55
CHD9Q3L8U1 RNU6-926P-201ENST00000384075 107 ntBASIC-0.87□□□□□ -2.55
CHD9Q3L8U1 RNU6-905P-201ENST00000384434 107 ntBASIC-0.87□□□□□ -2.55
CHD9Q3L8U1 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC-0.87□□□□□ -2.55
CHD9Q3L8U1 MIR5704-201ENST00000584029 77 ntBASIC-0.87□□□□□ -2.55
CHD9Q3L8U1 Y_RNA.443-201ENST00000384135 111 ntBASIC-0.87□□□□□ -2.55
CHD9Q3L8U1 MIR8485-201ENST00000401372 91 ntBASIC-0.87□□□□□ -2.55
CHD9Q3L8U1 RNU7-63P-201ENST00000459054 62 ntBASIC-0.87□□□□□ -2.55
CHD9Q3L8U1 SNORD11-201ENST00000459124 84 ntBASIC-0.87□□□□□ -2.55
CHD9Q3L8U1 VTRNA2-1-201ENST00000602301 127 ntBASIC-0.87□□□□□ -2.55
CHD9Q3L8U1 AL354950.2-201ENST00000617939 290 ntBASIC-0.87□□□□□ -2.55
CHD9Q3L8U1 snoR1.1-201ENST00000628177 80 ntBASIC-0.87□□□□□ -2.55
CHD9Q3L8U1 Y_RNA.5-201ENST00000362334 102 ntBASIC-0.88□□□□□ -2.55
CHD9Q3L8U1 Y_RNA.283-201ENST00000364798 112 ntBASIC-0.88□□□□□ -2.55
CHD9Q3L8U1 RNY1P2-201ENST00000364820 117 ntBASIC-0.88□□□□□ -2.55
CHD9Q3L8U1 RNU6-159P-201ENST00000391080 106 ntBASIC-0.88□□□□□ -2.55
CHD9Q3L8U1 AL353813.1-201ENST00000440700 253 ntBASIC-0.88□□□□□ -2.55
CHD9Q3L8U1 AC093423.1-201ENST00000440817 142 ntBASIC-0.88□□□□□ -2.55
CHD9Q3L8U1 RNU7-80P-201ENST00000459562 61 ntBASIC-0.88□□□□□ -2.55
CHD9Q3L8U1 Y_RNA.695-201ENST00000516715 107 ntBASIC-0.88□□□□□ -2.55
CHD9Q3L8U1 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-0.88□□□□□ -2.55
CHD9Q3L8U1 RNU6-1260P-201ENST00000362944 107 ntBASIC-0.88□□□□□ -2.55
CHD9Q3L8U1 RNU5F-6P-201ENST00000362979 116 ntBASIC-0.88□□□□□ -2.55
CHD9Q3L8U1 Y_RNA.241-201ENST00000364470 117 ntBASIC-0.88□□□□□ -2.55
CHD9Q3L8U1 RNU6-1138P-201ENST00000365359 106 ntBASIC-0.88□□□□□ -2.55
CHD9Q3L8U1 Y_RNA.400-201ENST00000383963 111 ntBASIC-0.88□□□□□ -2.55
CHD9Q3L8U1 RNU6-95P-201ENST00000384697 107 ntBASIC-0.88□□□□□ -2.55
CHD9Q3L8U1 MIR652-201ENST00000385278 98 ntBASIC-0.88□□□□□ -2.55
CHD9Q3L8U1 MIR548K-201ENST00000408406 116 ntBASIC-0.88□□□□□ -2.55
CHD9Q3L8U1 MTATP6P26-201ENST00000445926 662 ntBASIC-0.88□□□□□ -2.55
CHD9Q3L8U1 MTND3P16-201ENST00000452205 344 ntBASIC-0.88□□□□□ -2.55
CHD9Q3L8U1 RNU6-479P-201ENST00000516348 105 ntBASIC-0.88□□□□□ -2.55
CHD9Q3L8U1 RNU1-54P-201ENST00000517181 120 ntBASIC-0.88□□□□□ -2.55
CHD9Q3L8U1 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC-0.88□□□□□ -2.55
CHD9Q3L8U1 MIR1244-1-201ENST00000612829 85 ntBASIC-0.88□□□□□ -2.55
CHD9Q3L8U1 MIR1244-3-201ENST00000635744 85 ntBASIC-0.88□□□□□ -2.55
CHD9Q3L8U1 MIR1244-2-201ENST00000636449 85 ntBASIC-0.88□□□□□ -2.55
CHD9Q3L8U1 MIR1244-4-202ENST00000636813 85 ntBASIC-0.88□□□□□ -2.55
CHD9Q3L8U1 RNU6-194P-201ENST00000363862 105 ntBASIC-0.89□□□□□ -2.55
CHD9Q3L8U1 Y_RNA.299-201ENST00000364973 94 ntBASIC-0.89□□□□□ -2.55
CHD9Q3L8U1 SNORA18-201ENST00000384416 132 ntBASIC-0.89□□□□□ -2.55
CHD9Q3L8U1 RNU6-332P-201ENST00000391193 108 ntBASIC-0.89□□□□□ -2.55
CHD9Q3L8U1 NDUFAF4P4-201ENST00000454883 502 ntBASIC-0.89□□□□□ -2.55
Retrieved 100 of 98,524 protein–RNA pairs in 225.9 ms