Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 Y_RNA.440-201ENST00000384120 114 ntBASIC0.74□□□□□ -2.29
TNFRSF4P43489 Y_RNA.515-201ENST00000384535 112 ntBASIC0.74□□□□□ -2.29
TNFRSF4P43489 Y_RNA.542-201ENST00000384641 111 ntBASIC0.74□□□□□ -2.29
TNFRSF4P43489 RNU6-205P-201ENST00000390858 107 ntBASIC0.74□□□□□ -2.29
TNFRSF4P43489 RNU6-913P-201ENST00000390913 95 ntBASIC0.74□□□□□ -2.29
TNFRSF4P43489 SNORD77.3-201ENST00000391113 65 ntBASIC0.74□□□□□ -2.29
TNFRSF4P43489 RNU6-613P-201ENST00000410412 108 ntBASIC0.74□□□□□ -2.29
TNFRSF4P43489 AC006461.1-201ENST00000412637 326 ntBASIC0.74□□□□□ -2.29
TNFRSF4P43489 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.74□□□□□ -2.29
TNFRSF4P43489 AL035398.1-201ENST00000430869 322 ntBASIC0.74□□□□□ -2.29
TNFRSF4P43489 SEPT7P4-201ENST00000437076 306 ntBASIC0.74□□□□□ -2.29
TNFRSF4P43489 RNU2-11P-201ENST00000459191 187 ntBASIC0.74□□□□□ -2.29
TNFRSF4P43489 AC036111.3-201ENST00000526389 112 ntBASIC0.74□□□□□ -2.29
TNFRSF4P43489 MIR378D2-201ENST00000580636 98 ntBASIC0.74□□□□□ -2.29
TNFRSF4P43489 AC009779.6-201ENST00000603972 165 ntBASIC0.74□□□□□ -2.29
TNFRSF4P43489 AP000753.3-201ENST00000604083 169 ntBASIC0.74□□□□□ -2.29
TNFRSF4P43489 AL590095.2-201ENST00000604136 117 ntBASIC0.74□□□□□ -2.29
TNFRSF4P43489 AC078938.1-201ENST00000620993 318 ntBASIC0.74□□□□□ -2.29
TNFRSF4P43489 U6.106-201ENST00000636360 105 ntBASIC0.74□□□□□ -2.29
TNFRSF4P43489 MIR302B-201ENST00000362188 73 ntBASIC0.73□□□□□ -2.29
TNFRSF4P43489 SNORD113.3-201ENST00000364630 78 ntBASIC0.73□□□□□ -2.29
TNFRSF4P43489 MIR508-201ENST00000384857 115 ntBASIC0.73□□□□□ -2.29
TNFRSF4P43489 RNU6-918P-201ENST00000391219 106 ntBASIC0.73□□□□□ -2.29
TNFRSF4P43489 SNORD111-201ENST00000408139 94 ntBASIC0.73□□□□□ -2.29
TNFRSF4P43489 U7.7-201ENST00000459276 60 ntBASIC0.73□□□□□ -2.29
TNFRSF4P43489 RNU6-998P-201ENST00000515894 101 ntBASIC0.73□□□□□ -2.29
TNFRSF4P43489 RNU6-388P-201ENST00000517012 105 ntBASIC0.73□□□□□ -2.29
TNFRSF4P43489 RNU6-389P-201ENST00000517048 105 ntBASIC0.73□□□□□ -2.29
TNFRSF4P43489 AC106800.4-201ENST00000614905 153 ntBASIC0.73□□□□□ -2.29
TNFRSF4P43489 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.72□□□□□ -2.29
TNFRSF4P43489 RNU6-379P-201ENST00000363813 104 ntBASIC0.72□□□□□ -2.29
TNFRSF4P43489 SNORA1.1-201ENST00000364671 133 ntBASIC0.72□□□□□ -2.29
TNFRSF4P43489 Y_RNA.274-201ENST00000364714 101 ntBASIC0.72□□□□□ -2.29
TNFRSF4P43489 Y_RNA.351-201ENST00000365436 96 ntBASIC0.72□□□□□ -2.29
TNFRSF4P43489 RNU6-47P-201ENST00000383866 107 ntBASIC0.72□□□□□ -2.29
TNFRSF4P43489 Y_RNA.476-201ENST00000384347 108 ntBASIC0.72□□□□□ -2.29
TNFRSF4P43489 RNU6-125P-201ENST00000384505 107 ntBASIC0.72□□□□□ -2.29
TNFRSF4P43489 Y_RNA.521-201ENST00000384560 114 ntBASIC0.72□□□□□ -2.29
TNFRSF4P43489 MIR548I3-201ENST00000408378 149 ntBASIC0.72□□□□□ -2.29
TNFRSF4P43489 AC090844.1-201ENST00000422019 156 ntBASIC0.72□□□□□ -2.29
TNFRSF4P43489 HMGN1P33-201ENST00000432945 451 ntBASIC0.72□□□□□ -2.29
TNFRSF4P43489 RNU7-73P-201ENST00000458743 63 ntBASIC0.72□□□□□ -2.29
TNFRSF4P43489 RNU7-70P-201ENST00000516941 66 ntBASIC0.72□□□□□ -2.29
TNFRSF4P43489 AC025627.3-201ENST00000582078 182 ntBASIC0.72□□□□□ -2.29
TNFRSF4P43489 MIR5197-201ENST00000583721 112 ntBASIC0.72□□□□□ -2.29
TNFRSF4P43489 AL365205.2-201ENST00000594586 68 ntBASIC0.72□□□□□ -2.29
TNFRSF4P43489 AL353765.1-201ENST00000605514 183 ntBASIC0.72□□□□□ -2.29
TNFRSF4P43489 AL136317.1-201ENST00000612653 226 ntBASIC0.72□□□□□ -2.29
TNFRSF4P43489 MIR376A2-201ENST00000636782 80 ntBASIC0.72□□□□□ -2.29
TNFRSF4P43489 AL596211.1-201ENST00000569873 2277 ntBASIC0.71□□□□□ -2.3
TNFRSF4P43489 Y_RNA.75-201ENST00000362927 97 ntBASIC0.71□□□□□ -2.3
TNFRSF4P43489 RNU6-978P-201ENST00000364371 103 ntBASIC0.71□□□□□ -2.3
TNFRSF4P43489 Y_RNA.297-201ENST00000364950 91 ntBASIC0.71□□□□□ -2.3
TNFRSF4P43489 RNY1P4-201ENST00000384595 115 ntBASIC0.71□□□□□ -2.3
TNFRSF4P43489 Y_RNA.552-201ENST00000384665 112 ntBASIC0.71□□□□□ -2.3
TNFRSF4P43489 SNORD89-201ENST00000390981 114 ntBASIC0.71□□□□□ -2.3
TNFRSF4P43489 IGHVIII-67-2-201ENST00000519849 88 ntBASIC0.71□□□□□ -2.3
TNFRSF4P43489 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.71□□□□□ -2.3
TNFRSF4P43489 MIR4653-201ENST00000585107 83 ntBASIC0.71□□□□□ -2.3
TNFRSF4P43489 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.71□□□□□ -2.3
TNFRSF4P43489 AC141273.2-201ENST00000618989 130 ntBASIC0.71□□□□□ -2.3
TNFRSF4P43489 Y_RNA.168-201ENST00000363740 102 ntBASIC0.7□□□□□ -2.3
TNFRSF4P43489 Y_RNA.205-201ENST00000364128 113 ntBASIC0.7□□□□□ -2.3
TNFRSF4P43489 SNORA25.7-201ENST00000364375 127 ntBASIC0.7□□□□□ -2.3
TNFRSF4P43489 SNORD38B-201ENST00000384690 67 ntBASIC0.7□□□□□ -2.3
TNFRSF4P43489 MIR605-201ENST00000385078 83 ntBASIC0.7□□□□□ -2.3
TNFRSF4P43489 MT-TN-201ENST00000387400 73 ntBASIC0.7□□□□□ -2.3
TNFRSF4P43489 RNU6-1190P-201ENST00000410811 104 ntBASIC0.7□□□□□ -2.3
TNFRSF4P43489 AC022559.1-201ENST00000520905 205 ntBASIC0.7□□□□□ -2.3
TNFRSF4P43489 MIR4264-201ENST00000583520 66 ntBASIC0.7□□□□□ -2.3
TNFRSF4P43489 AC104465.1-201ENST00000611365 139 ntBASIC0.7□□□□□ -2.3
TNFRSF4P43489 SNORD38B-202ENST00000625943 69 ntBASIC0.7□□□□□ -2.3
TNFRSF4P43489 RNU6-1292P-201ENST00000383856 107 ntBASIC0.69□□□□□ -2.3
TNFRSF4P43489 Y_RNA.454-201ENST00000384224 113 ntBASIC0.69□□□□□ -2.3
TNFRSF4P43489 RNA5SP127-201ENST00000411051 133 ntBASIC0.69□□□□□ -2.3
TNFRSF4P43489 Y_RNA.793-201ENST00000411222 111 ntBASIC0.69□□□□□ -2.3
TNFRSF4P43489 RNU7-62P-201ENST00000458856 62 ntBASIC0.69□□□□□ -2.3
TNFRSF4P43489 Y_RNA.644-201ENST00000459006 113 ntBASIC0.69□□□□□ -2.3
TNFRSF4P43489 RNU7-80P-201ENST00000459562 61 ntBASIC0.69□□□□□ -2.3
TNFRSF4P43489 AC113410.1-201ENST00000505029 247 ntBASIC0.69□□□□□ -2.3
TNFRSF4P43489 RNU6-1219P-201ENST00000516143 112 ntBASIC0.69□□□□□ -2.3
TNFRSF4P43489 Y_RNA.674-201ENST00000516362 113 ntBASIC0.69□□□□□ -2.3
TNFRSF4P43489 RNU6-1110P-201ENST00000516462 101 ntBASIC0.69□□□□□ -2.3
TNFRSF4P43489 MRPS18CP4-201ENST00000535821 231 ntBASIC0.69□□□□□ -2.3
TNFRSF4P43489 AC013244.2-201ENST00000603396 103 ntBASIC0.69□□□□□ -2.3
TNFRSF4P43489 AC091932.4-201ENST00000623386 200 ntBASIC0.69□□□□□ -2.3
TNFRSF4P43489 MIR377-201ENST00000362145 69 ntBASIC0.68□□□□□ -2.3
TNFRSF4P43489 Y_RNA.233-201ENST00000364407 101 ntBASIC0.68□□□□□ -2.3
TNFRSF4P43489 RNU6-1335P-201ENST00000365426 107 ntBASIC0.68□□□□□ -2.3
TNFRSF4P43489 Y_RNA.435-201ENST00000384095 112 ntBASIC0.68□□□□□ -2.3
TNFRSF4P43489 MIR100-201ENST00000385259 80 ntBASIC0.68□□□□□ -2.3
TNFRSF4P43489 MT-TG-201ENST00000387429 68 ntBASIC0.68□□□□□ -2.3
TNFRSF4P43489 MIR936-201ENST00000401264 98 ntBASIC0.68□□□□□ -2.3
TNFRSF4P43489 RNU6ATAC23P-201ENST00000408448 123 ntBASIC0.68□□□□□ -2.3
TNFRSF4P43489 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.68□□□□□ -2.3
TNFRSF4P43489 RPS26P5-201ENST00000418544 335 ntBASIC0.68□□□□□ -2.3
TNFRSF4P43489 RNU7-45P-201ENST00000459460 63 ntBASIC0.68□□□□□ -2.3
TNFRSF4P43489 AP002392.1-201ENST00000537692 208 ntBASIC0.68□□□□□ -2.3
TNFRSF4P43489 AC004812.1-201ENST00000540773 146 ntBASIC0.68□□□□□ -2.3
TNFRSF4P43489 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.68□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 194.4 ms