Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 SNORD116-25-201ENST00000516517 92 ntBASIC1.13□□□□□ -2.23
USP41Q3LFD5 MIR548AO-201ENST00000579992 96 ntBASIC1.13□□□□□ -2.23
USP41Q3LFD5 AC027335.2-201ENST00000624030 375 ntBASIC1.13□□□□□ -2.23
USP41Q3LFD5 Y_RNA.75-201ENST00000362927 97 ntBASIC1.12□□□□□ -2.23
USP41Q3LFD5 Y_RNA.233-201ENST00000364407 101 ntBASIC1.12□□□□□ -2.23
USP41Q3LFD5 Y_RNA.410-201ENST00000383992 113 ntBASIC1.12□□□□□ -2.23
USP41Q3LFD5 Y_RNA.435-201ENST00000384095 112 ntBASIC1.12□□□□□ -2.23
USP41Q3LFD5 AC063976.4-201ENST00000421971 163 ntBASIC1.12□□□□□ -2.23
USP41Q3LFD5 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC1.12□□□□□ -2.23
USP41Q3LFD5 AC002429.1-201ENST00000437672 148 ntBASIC1.12□□□□□ -2.23
USP41Q3LFD5 AL138752.1-201ENST00000452964 351 ntBASIC1.12□□□□□ -2.23
USP41Q3LFD5 RNU6-138P-201ENST00000515952 107 ntBASIC1.12□□□□□ -2.23
USP41Q3LFD5 RNU6-1219P-201ENST00000516143 112 ntBASIC1.12□□□□□ -2.23
USP41Q3LFD5 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC1.12□□□□□ -2.23
USP41Q3LFD5 MIR342-201ENST00000362212 99 ntBASIC1.11□□□□□ -2.23
USP41Q3LFD5 Y_RNA.257-201ENST00000364596 102 ntBASIC1.11□□□□□ -2.23
USP41Q3LFD5 RNU6-200P-201ENST00000364743 107 ntBASIC1.11□□□□□ -2.23
USP41Q3LFD5 Y_RNA.521-201ENST00000384560 114 ntBASIC1.11□□□□□ -2.23
USP41Q3LFD5 Y_RNA.542-201ENST00000384641 111 ntBASIC1.11□□□□□ -2.23
USP41Q3LFD5 SNORD12-201ENST00000391002 90 ntBASIC1.11□□□□□ -2.23
USP41Q3LFD5 RNU7-21P-201ENST00000459430 62 ntBASIC1.11□□□□□ -2.23
USP41Q3LFD5 RPS29P24-201ENST00000486345 171 ntBASIC1.11□□□□□ -2.23
USP41Q3LFD5 RNA5SP404-201ENST00000517118 132 ntBASIC1.11□□□□□ -2.23
USP41Q3LFD5 MRPS18CP4-201ENST00000535821 231 ntBASIC1.11□□□□□ -2.23
USP41Q3LFD5 SNORD114-21-201ENST00000606412 72 ntBASIC1.11□□□□□ -2.23
USP41Q3LFD5 AC103810.9-201ENST00000606688 112 ntBASIC1.11□□□□□ -2.23
USP41Q3LFD5 Y_RNA.440-201ENST00000384120 114 ntBASIC1.1□□□□□ -2.23
USP41Q3LFD5 MIR1302-7-201ENST00000408841 72 ntBASIC1.1□□□□□ -2.23
USP41Q3LFD5 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.1□□□□□ -2.23
USP41Q3LFD5 RNU7-90P-201ENST00000459216 62 ntBASIC1.1□□□□□ -2.23
USP41Q3LFD5 snoU13.16-201ENST00000459350 104 ntBASIC1.1□□□□□ -2.23
USP41Q3LFD5 AP002392.1-201ENST00000537692 208 ntBASIC1.1□□□□□ -2.23
USP41Q3LFD5 SEPT14P17-201ENST00000617978 177 ntBASIC1.1□□□□□ -2.23
USP41Q3LFD5 RNU1-124P-201ENST00000363861 145 ntBASIC1.09□□□□□ -2.23
USP41Q3LFD5 RNU6-978P-201ENST00000364371 103 ntBASIC1.09□□□□□ -2.23
USP41Q3LFD5 SNORA24-201ENST00000384096 131 ntBASIC1.09□□□□□ -2.23
USP41Q3LFD5 SEPT7P4-201ENST00000437076 306 ntBASIC1.09□□□□□ -2.23
USP41Q3LFD5 OR2A41P-201ENST00000473586 105 ntBASIC1.09□□□□□ -2.23
USP41Q3LFD5 RNU7-53P-201ENST00000516705 60 ntBASIC1.09□□□□□ -2.23
USP41Q3LFD5 AC023827.1-201ENST00000569247 97 ntBASIC1.09□□□□□ -2.23
USP41Q3LFD5 AL365205.2-201ENST00000594586 68 ntBASIC1.09□□□□□ -2.23
USP41Q3LFD5 AC072026.1-201ENST00000605023 201 ntBASIC1.09□□□□□ -2.23
USP41Q3LFD5 MIR6788-201ENST00000618842 66 ntBASIC1.09□□□□□ -2.23
USP41Q3LFD5 MIR6516-201ENST00000630554 81 ntBASIC1.09□□□□□ -2.23
USP41Q3LFD5 MIR376A2-201ENST00000636782 80 ntBASIC1.09□□□□□ -2.23
USP41Q3LFD5 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.08□□□□□ -2.24
USP41Q3LFD5 RNU6-396P-201ENST00000365369 105 ntBASIC1.08□□□□□ -2.24
USP41Q3LFD5 AL035398.1-201ENST00000430869 322 ntBASIC1.08□□□□□ -2.24
USP41Q3LFD5 MTND5P15-201ENST00000434246 349 ntBASIC1.08□□□□□ -2.24
USP41Q3LFD5 AL392103.1-201ENST00000447000 198 ntBASIC1.08□□□□□ -2.24
USP41Q3LFD5 RNU11-2P-201ENST00000516898 142 ntBASIC1.08□□□□□ -2.24
USP41Q3LFD5 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.08□□□□□ -2.24
USP41Q3LFD5 MIR4431-201ENST00000579990 94 ntBASIC1.08□□□□□ -2.24
USP41Q3LFD5 RNU6-654P-201ENST00000364373 107 ntBASIC1.07□□□□□ -2.24
USP41Q3LFD5 RNU4-38P-201ENST00000364472 129 ntBASIC1.07□□□□□ -2.24
USP41Q3LFD5 Y_RNA.351-201ENST00000365436 96 ntBASIC1.07□□□□□ -2.24
USP41Q3LFD5 RNU6-1292P-201ENST00000383856 107 ntBASIC1.07□□□□□ -2.24
USP41Q3LFD5 RNU6-913P-201ENST00000390913 95 ntBASIC1.07□□□□□ -2.24
USP41Q3LFD5 MIR548J-201ENST00000408833 112 ntBASIC1.07□□□□□ -2.24
USP41Q3LFD5 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC1.07□□□□□ -2.24
USP41Q3LFD5 RNU2-11P-201ENST00000459191 187 ntBASIC1.07□□□□□ -2.24
USP41Q3LFD5 RNU7-96P-201ENST00000459535 64 ntBASIC1.07□□□□□ -2.24
USP41Q3LFD5 MIR2115-201ENST00000516657 100 ntBASIC1.07□□□□□ -2.24
USP41Q3LFD5 MIR5197-201ENST00000583721 112 ntBASIC1.07□□□□□ -2.24
USP41Q3LFD5 MIR151B-201ENST00000584249 96 ntBASIC1.07□□□□□ -2.24
USP41Q3LFD5 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.07□□□□□ -2.24
USP41Q3LFD5 Y_RNA.29-201ENST00000362570 113 ntBASIC1.06□□□□□ -2.24
USP41Q3LFD5 SNORA25.7-201ENST00000364375 127 ntBASIC1.06□□□□□ -2.24
USP41Q3LFD5 RNU6-312P-201ENST00000364629 107 ntBASIC1.06□□□□□ -2.24
USP41Q3LFD5 RNA5SP95-201ENST00000410319 137 ntBASIC1.06□□□□□ -2.24
USP41Q3LFD5 RNU6-998P-201ENST00000515894 101 ntBASIC1.06□□□□□ -2.24
USP41Q3LFD5 RNU6-1223P-201ENST00000517124 104 ntBASIC1.06□□□□□ -2.24
USP41Q3LFD5 IGHVIII-67-2-201ENST00000519849 88 ntBASIC1.06□□□□□ -2.24
USP41Q3LFD5 AC090425.1-201ENST00000610007 140 ntBASIC1.06□□□□□ -2.24
USP41Q3LFD5 AC022709.1-201ENST00000615967 87 ntBASIC1.06□□□□□ -2.24
USP41Q3LFD5 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC1.05□□□□□ -2.24
USP41Q3LFD5 MIR302B-201ENST00000362188 73 ntBASIC1.05□□□□□ -2.24
USP41Q3LFD5 RNU6-1336P-201ENST00000383886 109 ntBASIC1.05□□□□□ -2.24
USP41Q3LFD5 SNORA22-201ENST00000383907 134 ntBASIC1.05□□□□□ -2.24
USP41Q3LFD5 SNORA22C-201ENST00000384614 134 ntBASIC1.05□□□□□ -2.24
USP41Q3LFD5 MIR19B1-201ENST00000384829 87 ntBASIC1.05□□□□□ -2.24
USP41Q3LFD5 RNA5SP127-201ENST00000411051 133 ntBASIC1.05□□□□□ -2.24
USP41Q3LFD5 RNU7-73P-201ENST00000458743 63 ntBASIC1.05□□□□□ -2.24
USP41Q3LFD5 SNORD124-201ENST00000459577 104 ntBASIC1.05□□□□□ -2.24
USP41Q3LFD5 AC107027.2-201ENST00000512197 115 ntBASIC1.05□□□□□ -2.24
USP41Q3LFD5 SNORA81.3-201ENST00000517283 198 ntBASIC1.05□□□□□ -2.24
USP41Q3LFD5 AC131055.1-201ENST00000584626 316 ntBASIC1.05□□□□□ -2.24
USP41Q3LFD5 MIR6857-201ENST00000613267 93 ntBASIC1.05□□□□□ -2.24
USP41Q3LFD5 MIR373-201ENST00000362273 69 ntBASIC1.04□□□□□ -2.24
USP41Q3LFD5 Y_RNA.357-201ENST00000365487 109 ntBASIC1.04□□□□□ -2.24
USP41Q3LFD5 SNORA2B-201ENST00000384583 137 ntBASIC1.04□□□□□ -2.24
USP41Q3LFD5 MIR532-201ENST00000385025 91 ntBASIC1.04□□□□□ -2.24
USP41Q3LFD5 MIR548I3-201ENST00000408378 149 ntBASIC1.04□□□□□ -2.24
USP41Q3LFD5 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.04□□□□□ -2.24
USP41Q3LFD5 AC090844.1-201ENST00000422019 156 ntBASIC1.04□□□□□ -2.24
USP41Q3LFD5 HMGN1P33-201ENST00000432945 451 ntBASIC1.04□□□□□ -2.24
USP41Q3LFD5 RNU6-861P-201ENST00000516745 106 ntBASIC1.04□□□□□ -2.24
USP41Q3LFD5 RNU7-70P-201ENST00000516941 66 ntBASIC1.04□□□□□ -2.24
USP41Q3LFD5 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.04□□□□□ -2.24
USP41Q3LFD5 AC211469.2-201ENST00000605461 205 ntBASIC1.04□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 321.2 ms