Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.29□□□□□ -1.88
COL9A1P20849 RNU4-83P-201ENST00000410863 133 ntBASIC3.29□□□□□ -1.88
COL9A1P20849 RNA5SP481-201ENST00000516814 122 ntBASIC3.29□□□□□ -1.88
COL9A1P20849 RNU6-850P-201ENST00000516934 103 ntBASIC3.29□□□□□ -1.88
COL9A1P20849 AC079600.2-201ENST00000550076 130 ntBASIC3.29□□□□□ -1.88
COL9A1P20849 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
COL9A1P20849 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
COL9A1P20849 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.28□□□□□ -1.88
COL9A1P20849 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.28□□□□□ -1.88
COL9A1P20849 WWP1P1-201ENST00000466609 2769 ntBASIC3.28□□□□□ -1.88
COL9A1P20849 RNU6-949P-201ENST00000384040 107 ntBASIC3.28□□□□□ -1.88
COL9A1P20849 RNU1-89P-201ENST00000384592 164 ntBASIC3.28□□□□□ -1.88
COL9A1P20849 SNORD77.2-201ENST00000391045 68 ntBASIC3.28□□□□□ -1.88
COL9A1P20849 AL138878.1-201ENST00000405131 347 ntBASIC3.28□□□□□ -1.88
COL9A1P20849 SNORA3.2-201ENST00000408221 125 ntBASIC3.28□□□□□ -1.88
COL9A1P20849 AC027119.1-201ENST00000440877 241 ntBASIC3.28□□□□□ -1.88
COL9A1P20849 MIR4536-1-201ENST00000583537 88 ntBASIC3.28□□□□□ -1.88
COL9A1P20849 AL662814.1-201ENST00000617364 121 ntBASIC3.28□□□□□ -1.88
COL9A1P20849 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.28□□□□□ -1.88
COL9A1P20849 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
COL9A1P20849 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC3.28□□□□□ -1.88
COL9A1P20849 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
COL9A1P20849 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.89
COL9A1P20849 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
COL9A1P20849 MIR424-201ENST00000362227 98 ntBASIC3.27□□□□□ -1.89
COL9A1P20849 Y_RNA.205-201ENST00000364128 113 ntBASIC3.27□□□□□ -1.89
COL9A1P20849 Y_RNA.386-201ENST00000383913 105 ntBASIC3.27□□□□□ -1.89
COL9A1P20849 RNU11-3P-201ENST00000391111 133 ntBASIC3.27□□□□□ -1.89
COL9A1P20849 RPS27P21-201ENST00000486977 252 ntBASIC3.27□□□□□ -1.89
COL9A1P20849 RNU6-1053P-201ENST00000515930 101 ntBASIC3.27□□□□□ -1.89
COL9A1P20849 UBL5P2-201ENST00000583788 219 ntBASIC3.27□□□□□ -1.89
COL9A1P20849 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
COL9A1P20849 AC008163.1-202ENST00000636004 2889 ntBASIC3.27□□□□□ -1.89
COL9A1P20849 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
COL9A1P20849 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
COL9A1P20849 Y_RNA.532-201ENST00000384590 113 ntBASIC3.26□□□□□ -1.89
COL9A1P20849 MIR520C-201ENST00000385005 87 ntBASIC3.26□□□□□ -1.89
COL9A1P20849 MTND4LP19-201ENST00000403051 166 ntBASIC3.26□□□□□ -1.89
COL9A1P20849 AC011753.1-201ENST00000451001 220 ntBASIC3.26□□□□□ -1.89
COL9A1P20849 snoU13.27-201ENST00000459278 104 ntBASIC3.26□□□□□ -1.89
COL9A1P20849 MIR2114-201ENST00000516645 80 ntBASIC3.26□□□□□ -1.89
COL9A1P20849 MIR4738-201ENST00000579134 87 ntBASIC3.26□□□□□ -1.89
COL9A1P20849 MIR5047-201ENST00000579212 100 ntBASIC3.26□□□□□ -1.89
COL9A1P20849 MIR4500-201ENST00000579472 76 ntBASIC3.26□□□□□ -1.89
COL9A1P20849 MIR548AO-201ENST00000579992 96 ntBASIC3.26□□□□□ -1.89
COL9A1P20849 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.26□□□□□ -1.89
COL9A1P20849 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.26□□□□□ -1.89
COL9A1P20849 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC3.26□□□□□ -1.89
COL9A1P20849 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
COL9A1P20849 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
COL9A1P20849 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.25□□□□□ -1.89
COL9A1P20849 MIR635-201ENST00000384830 98 ntBASIC3.25□□□□□ -1.89
COL9A1P20849 MIR520H-201ENST00000385126 88 ntBASIC3.25□□□□□ -1.89
COL9A1P20849 RNU6-587P-201ENST00000391282 106 ntBASIC3.25□□□□□ -1.89
COL9A1P20849 AC099513.1-201ENST00000490423 301 ntBASIC3.25□□□□□ -1.89
COL9A1P20849 SNORA18.5-201ENST00000516616 101 ntBASIC3.25□□□□□ -1.89
COL9A1P20849 RNU6-303P-201ENST00000517091 106 ntBASIC3.25□□□□□ -1.89
COL9A1P20849 MIR4644-201ENST00000579929 84 ntBASIC3.25□□□□□ -1.89
COL9A1P20849 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.25□□□□□ -1.89
COL9A1P20849 AC108206.1-201ENST00000570186 4159 ntBASIC3.25□□□□□ -1.89
COL9A1P20849 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
COL9A1P20849 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.24□□□□□ -1.89
COL9A1P20849 MIR597-201ENST00000384968 97 ntBASIC3.24□□□□□ -1.89
COL9A1P20849 RNA5SP229-201ENST00000410809 99 ntBASIC3.24□□□□□ -1.89
COL9A1P20849 AC023790.1-201ENST00000482174 347 ntBASIC3.24□□□□□ -1.89
COL9A1P20849 RNA5SP437-201ENST00000517249 129 ntBASIC3.24□□□□□ -1.89
COL9A1P20849 MIR3126-201ENST00000577443 74 ntBASIC3.24□□□□□ -1.89
COL9A1P20849 MIR4484-201ENST00000582855 83 ntBASIC3.24□□□□□ -1.89
COL9A1P20849 MIR3935-201ENST00000583472 104 ntBASIC3.24□□□□□ -1.89
COL9A1P20849 uc_338.1-201ENST00000612113 180 ntBASIC3.24□□□□□ -1.89
COL9A1P20849 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC3.24□□□□□ -1.89
COL9A1P20849 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.24□□□□□ -1.89
COL9A1P20849 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.24□□□□□ -1.89
COL9A1P20849 MIR518E-201ENST00000385252 88 ntBASIC3.23□□□□□ -1.89
COL9A1P20849 MIR548U-201ENST00000390728 81 ntBASIC3.23□□□□□ -1.89
COL9A1P20849 RNA5SP292-201ENST00000390974 118 ntBASIC3.23□□□□□ -1.89
COL9A1P20849 RNA5SP465-201ENST00000391195 109 ntBASIC3.23□□□□□ -1.89
COL9A1P20849 RN7SL330P-201ENST00000469709 307 ntBASIC3.23□□□□□ -1.89
COL9A1P20849 AC138749.4-201ENST00000563970 127 ntBASIC3.23□□□□□ -1.89
COL9A1P20849 MIR4251-201ENST00000635819 61 ntBASIC3.23□□□□□ -1.89
COL9A1P20849 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
COL9A1P20849 SNORA7.4-201ENST00000384249 137 ntBASIC3.22□□□□□ -1.89
COL9A1P20849 AC074348.1-201ENST00000426503 132 ntBASIC3.22□□□□□ -1.89
COL9A1P20849 HSPE1P24-201ENST00000450782 238 ntBASIC3.22□□□□□ -1.89
COL9A1P20849 RNA5SP137-201ENST00000516833 135 ntBASIC3.22□□□□□ -1.89
COL9A1P20849 SUB1P4-201ENST00000566062 339 ntBASIC3.22□□□□□ -1.89
COL9A1P20849 AC104996.3-201ENST00000590718 94 ntBASIC3.22□□□□□ -1.89
COL9A1P20849 AC022202.1-201ENST00000613515 211 ntBASIC3.22□□□□□ -1.89
COL9A1P20849 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
COL9A1P20849 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.21□□□□□ -1.89
COL9A1P20849 SNORA48.1-201ENST00000390879 135 ntBASIC3.21□□□□□ -1.9
COL9A1P20849 SNORD30.1-201ENST00000391309 70 ntBASIC3.21□□□□□ -1.9
COL9A1P20849 HMGN2P39-201ENST00000398005 273 ntBASIC3.21□□□□□ -1.9
COL9A1P20849 RN7SKP220-201ENST00000410611 288 ntBASIC3.21□□□□□ -1.9
COL9A1P20849 HMGN2P3-201ENST00000433603 273 ntBASIC3.21□□□□□ -1.9
COL9A1P20849 HMGN2P5-201ENST00000436882 273 ntBASIC3.21□□□□□ -1.9
COL9A1P20849 SNORD109B-201ENST00000458961 67 ntBASIC3.21□□□□□ -1.9
COL9A1P20849 SNORD109A-201ENST00000459128 67 ntBASIC3.21□□□□□ -1.9
COL9A1P20849 snoU13.18-201ENST00000459483 104 ntBASIC3.21□□□□□ -1.9
COL9A1P20849 MIR2276-201ENST00000516886 89 ntBASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 183.6 ms