Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 AC063976.4-201ENST00000421971 163 ntBASIC1.18□□□□□ -2.22
LIMA1Q9UHB6 RPS26P48-201ENST00000491713 339 ntBASIC1.18□□□□□ -2.22
LIMA1Q9UHB6 RNU6-693P-201ENST00000516134 107 ntBASIC1.18□□□□□ -2.22
LIMA1Q9UHB6 AP003716.2-201ENST00000528260 108 ntBASIC1.18□□□□□ -2.22
LIMA1Q9UHB6 AC098479.1-201ENST00000609225 154 ntBASIC1.18□□□□□ -2.22
LIMA1Q9UHB6 MIR376A2-201ENST00000636782 80 ntBASIC1.18□□□□□ -2.22
LIMA1Q9UHB6 MIR103A2-201ENST00000362154 78 ntBASIC1.17□□□□□ -2.22
LIMA1Q9UHB6 SNORA25.3-201ENST00000363205 127 ntBASIC1.17□□□□□ -2.22
LIMA1Q9UHB6 RNU1-124P-201ENST00000363861 145 ntBASIC1.17□□□□□ -2.22
LIMA1Q9UHB6 RNU4-84P-201ENST00000364200 139 ntBASIC1.17□□□□□ -2.22
LIMA1Q9UHB6 Y_RNA.555-201ENST00000384673 110 ntBASIC1.17□□□□□ -2.22
LIMA1Q9UHB6 RNU6-1135P-201ENST00000411083 103 ntBASIC1.17□□□□□ -2.22
LIMA1Q9UHB6 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.17□□□□□ -2.22
LIMA1Q9UHB6 Y_RNA.662-201ENST00000516028 97 ntBASIC1.17□□□□□ -2.22
LIMA1Q9UHB6 RNU6-126P-201ENST00000516685 103 ntBASIC1.17□□□□□ -2.22
LIMA1Q9UHB6 RNU7-181P-201ENST00000517234 74 ntBASIC1.17□□□□□ -2.22
LIMA1Q9UHB6 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.17□□□□□ -2.22
LIMA1Q9UHB6 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC1.17□□□□□ -2.22
LIMA1Q9UHB6 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.16□□□□□ -2.22
LIMA1Q9UHB6 SNORA70.7-201ENST00000384159 133 ntBASIC1.16□□□□□ -2.22
LIMA1Q9UHB6 Y_RNA.494-201ENST00000384432 111 ntBASIC1.16□□□□□ -2.22
LIMA1Q9UHB6 MIR19B1-201ENST00000384829 87 ntBASIC1.16□□□□□ -2.22
LIMA1Q9UHB6 AC006461.1-201ENST00000412637 326 ntBASIC1.16□□□□□ -2.22
LIMA1Q9UHB6 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.16□□□□□ -2.22
LIMA1Q9UHB6 AF228730.3-201ENST00000436691 102 ntBASIC1.16□□□□□ -2.22
LIMA1Q9UHB6 RNU7-21P-201ENST00000459430 62 ntBASIC1.16□□□□□ -2.22
LIMA1Q9UHB6 RPS23P4-201ENST00000487908 423 ntBASIC1.16□□□□□ -2.22
LIMA1Q9UHB6 RNU6-504P-201ENST00000516568 104 ntBASIC1.16□□□□□ -2.22
LIMA1Q9UHB6 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.16□□□□□ -2.22
LIMA1Q9UHB6 MIR378D2-201ENST00000580636 98 ntBASIC1.16□□□□□ -2.22
LIMA1Q9UHB6 MIR4251-201ENST00000635819 61 ntBASIC1.16□□□□□ -2.22
LIMA1Q9UHB6 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.15□□□□□ -2.23
LIMA1Q9UHB6 SNORD115-28-201ENST00000363931 81 ntBASIC1.15□□□□□ -2.23
LIMA1Q9UHB6 RNU6-1336P-201ENST00000383886 109 ntBASIC1.15□□□□□ -2.23
LIMA1Q9UHB6 RNU6-768P-201ENST00000384683 107 ntBASIC1.15□□□□□ -2.23
LIMA1Q9UHB6 SNORD77.3-201ENST00000391113 65 ntBASIC1.15□□□□□ -2.23
LIMA1Q9UHB6 SNORA26-201ENST00000391286 122 ntBASIC1.15□□□□□ -2.23
LIMA1Q9UHB6 AC002429.1-201ENST00000437672 148 ntBASIC1.15□□□□□ -2.23
LIMA1Q9UHB6 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.15□□□□□ -2.23
LIMA1Q9UHB6 AC005840.1-201ENST00000498412 377 ntBASIC1.15□□□□□ -2.23
LIMA1Q9UHB6 RNU7-121P-201ENST00000516604 62 ntBASIC1.15□□□□□ -2.23
LIMA1Q9UHB6 SNORD36C-201ENST00000516733 66 ntBASIC1.15□□□□□ -2.23
LIMA1Q9UHB6 AL365205.2-201ENST00000594586 68 ntBASIC1.15□□□□□ -2.23
LIMA1Q9UHB6 SNORD114-21-201ENST00000606412 72 ntBASIC1.15□□□□□ -2.23
LIMA1Q9UHB6 MIR6078-201ENST00000611069 100 ntBASIC1.15□□□□□ -2.23
LIMA1Q9UHB6 MIR3658-201ENST00000636291 56 ntBASIC1.15□□□□□ -2.23
LIMA1Q9UHB6 AC008163.1-202ENST00000636004 2889 ntBASIC1.14□□□□□ -2.23
LIMA1Q9UHB6 Y_RNA.37-201ENST00000362606 108 ntBASIC1.14□□□□□ -2.23
LIMA1Q9UHB6 RNY1P11-201ENST00000363759 113 ntBASIC1.14□□□□□ -2.23
LIMA1Q9UHB6 RNU6-818P-201ENST00000364837 108 ntBASIC1.14□□□□□ -2.23
LIMA1Q9UHB6 SNORA1.2-201ENST00000365189 134 ntBASIC1.14□□□□□ -2.23
LIMA1Q9UHB6 MIR570-201ENST00000384917 97 ntBASIC1.14□□□□□ -2.23
LIMA1Q9UHB6 SNORA79-201ENST00000408376 140 ntBASIC1.14□□□□□ -2.23
LIMA1Q9UHB6 MIR1185-1-201ENST00000408598 86 ntBASIC1.14□□□□□ -2.23
LIMA1Q9UHB6 RNU6-394P-201ENST00000410735 107 ntBASIC1.14□□□□□ -2.23
LIMA1Q9UHB6 AC107027.2-201ENST00000512197 115 ntBASIC1.14□□□□□ -2.23
LIMA1Q9UHB6 MIR3129-201ENST00000581095 76 ntBASIC1.14□□□□□ -2.23
LIMA1Q9UHB6 AC103810.9-201ENST00000606688 112 ntBASIC1.14□□□□□ -2.23
LIMA1Q9UHB6 Y_RNA.180-201ENST00000363867 113 ntBASIC1.13□□□□□ -2.23
LIMA1Q9UHB6 Y_RNA.270-201ENST00000364693 104 ntBASIC1.13□□□□□ -2.23
LIMA1Q9UHB6 Y_RNA.272-201ENST00000364696 102 ntBASIC1.13□□□□□ -2.23
LIMA1Q9UHB6 RNU6-1130P-201ENST00000365434 107 ntBASIC1.13□□□□□ -2.23
LIMA1Q9UHB6 RNU6-597P-201ENST00000365620 102 ntBASIC1.13□□□□□ -2.23
LIMA1Q9UHB6 RNU6-1067P-201ENST00000384752 107 ntBASIC1.13□□□□□ -2.23
LIMA1Q9UHB6 RNU6-239P-201ENST00000390990 99 ntBASIC1.13□□□□□ -2.23
LIMA1Q9UHB6 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.13□□□□□ -2.23
LIMA1Q9UHB6 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC1.13□□□□□ -2.23
LIMA1Q9UHB6 RNU7-90P-201ENST00000459216 62 ntBASIC1.13□□□□□ -2.23
LIMA1Q9UHB6 RNU2-13P-201ENST00000515909 113 ntBASIC1.13□□□□□ -2.23
LIMA1Q9UHB6 SNORD116-25-201ENST00000516517 92 ntBASIC1.13□□□□□ -2.23
LIMA1Q9UHB6 AC104465.1-201ENST00000611365 139 ntBASIC1.13□□□□□ -2.23
LIMA1Q9UHB6 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.12□□□□□ -2.23
LIMA1Q9UHB6 RNU6-1082P-201ENST00000364574 107 ntBASIC1.12□□□□□ -2.23
LIMA1Q9UHB6 Y_RNA.370-201ENST00000365589 108 ntBASIC1.12□□□□□ -2.23
LIMA1Q9UHB6 Y_RNA.393-201ENST00000383936 102 ntBASIC1.12□□□□□ -2.23
LIMA1Q9UHB6 RNU6-804P-201ENST00000384286 107 ntBASIC1.12□□□□□ -2.23
LIMA1Q9UHB6 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC1.12□□□□□ -2.23
LIMA1Q9UHB6 SNORA18.4-201ENST00000516440 124 ntBASIC1.12□□□□□ -2.23
LIMA1Q9UHB6 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.12□□□□□ -2.23
LIMA1Q9UHB6 snoU13.31-201ENST00000607291 104 ntBASIC1.12□□□□□ -2.23
LIMA1Q9UHB6 Y_RNA.330-201ENST00000365230 109 ntBASIC1.11□□□□□ -2.23
LIMA1Q9UHB6 SNORA51.10-201ENST00000384418 136 ntBASIC1.11□□□□□ -2.23
LIMA1Q9UHB6 Y_RNA.537-201ENST00000384626 109 ntBASIC1.11□□□□□ -2.23
LIMA1Q9UHB6 Y_RNA.542-201ENST00000384641 111 ntBASIC1.11□□□□□ -2.23
LIMA1Q9UHB6 MTND5P41-201ENST00000517498 206 ntBASIC1.11□□□□□ -2.23
LIMA1Q9UHB6 AP003484.1-201ENST00000530974 250 ntBASIC1.11□□□□□ -2.23
LIMA1Q9UHB6 SEPT14P17-201ENST00000617978 177 ntBASIC1.11□□□□□ -2.23
LIMA1Q9UHB6 AC134878.1-201ENST00000619901 243 ntBASIC1.11□□□□□ -2.23
LIMA1Q9UHB6 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC1.1□□□□□ -2.23
LIMA1Q9UHB6 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC1.1□□□□□ -2.23
LIMA1Q9UHB6 RNA5SP432-201ENST00000362480 116 ntBASIC1.1□□□□□ -2.23
LIMA1Q9UHB6 Y_RNA.357-201ENST00000365487 109 ntBASIC1.1□□□□□ -2.23
LIMA1Q9UHB6 RNU6-209P-201ENST00000384118 107 ntBASIC1.1□□□□□ -2.23
LIMA1Q9UHB6 Y_RNA.440-201ENST00000384120 114 ntBASIC1.1□□□□□ -2.23
LIMA1Q9UHB6 AC087499.4-201ENST00000448505 178 ntBASIC1.1□□□□□ -2.23
LIMA1Q9UHB6 OR2A41P-201ENST00000473586 105 ntBASIC1.1□□□□□ -2.23
LIMA1Q9UHB6 AC108729.3-201ENST00000513484 108 ntBASIC1.1□□□□□ -2.23
LIMA1Q9UHB6 RNU6-1212P-201ENST00000517023 104 ntBASIC1.1□□□□□ -2.23
LIMA1Q9UHB6 MIR3144-201ENST00000579460 79 ntBASIC1.1□□□□□ -2.23
LIMA1Q9UHB6 MIR5197-201ENST00000583721 112 ntBASIC1.1□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 192.8 ms