Protein–RNA interactions for Protein: Q12829

RAB40B, Ras-related protein Rab-40B, humanhuman

Predictions only

Length 278 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40BQ12829 RNU4-45P-201ENST00000365469 141 ntBASIC0.37□□□□□ -2.35
RAB40BQ12829 Y_RNA.455-201ENST00000384230 98 ntBASIC0.37□□□□□ -2.35
RAB40BQ12829 Y_RNA.460-201ENST00000384255 102 ntBASIC0.37□□□□□ -2.35
RAB40BQ12829 AL117351.2-201ENST00000513571 157 ntBASIC0.37□□□□□ -2.35
RAB40BQ12829 SNORD36C-201ENST00000516733 66 ntBASIC0.37□□□□□ -2.35
RAB40BQ12829 RNU6-365P-201ENST00000517113 106 ntBASIC0.37□□□□□ -2.35
RAB40BQ12829 AC100767.1-201ENST00000528178 123 ntBASIC0.37□□□□□ -2.35
RAB40BQ12829 AL162730.1-201ENST00000605734 292 ntBASIC0.37□□□□□ -2.35
RAB40BQ12829 MIR6740-201ENST00000618268 113 ntBASIC0.37□□□□□ -2.35
RAB40BQ12829 Z97988.1-201ENST00000637697 135 ntBASIC0.37□□□□□ -2.35
RAB40BQ12829 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.37□□□□□ -2.35
RAB40BQ12829 RNA5SP499-201ENST00000363982 119 ntBASIC0.36□□□□□ -2.35
RAB40BQ12829 SNORA1.1-201ENST00000364671 133 ntBASIC0.36□□□□□ -2.35
RAB40BQ12829 SNORA22B-201ENST00000383876 138 ntBASIC0.36□□□□□ -2.35
RAB40BQ12829 SNORD61-201ENST00000384252 73 ntBASIC0.36□□□□□ -2.35
RAB40BQ12829 MIR548A2-201ENST00000384956 97 ntBASIC0.36□□□□□ -2.35
RAB40BQ12829 MIR936-201ENST00000401264 98 ntBASIC0.36□□□□□ -2.35
RAB40BQ12829 MTND4LP11-201ENST00000422184 280 ntBASIC0.36□□□□□ -2.35
RAB40BQ12829 HMGN1P33-201ENST00000432945 451 ntBASIC0.36□□□□□ -2.35
RAB40BQ12829 AL731563.1-201ENST00000442202 214 ntBASIC0.36□□□□□ -2.35
RAB40BQ12829 RNU6-229P-201ENST00000516614 102 ntBASIC0.36□□□□□ -2.35
RAB40BQ12829 MIR8055-201ENST00000610739 97 ntBASIC0.36□□□□□ -2.35
RAB40BQ12829 uc_338.6-201ENST00000613544 171 ntBASIC0.36□□□□□ -2.35
RAB40BQ12829 AC243829.3-201ENST00000622177 108 ntBASIC0.36□□□□□ -2.35
RAB40BQ12829 Y_RNA.16-201ENST00000362421 102 ntBASIC0.35□□□□□ -2.35
RAB40BQ12829 Y_RNA.24-201ENST00000362508 103 ntBASIC0.35□□□□□ -2.35
RAB40BQ12829 RNU6-888P-201ENST00000363010 101 ntBASIC0.35□□□□□ -2.35
RAB40BQ12829 Y_RNA.128-201ENST00000363391 112 ntBASIC0.35□□□□□ -2.35
RAB40BQ12829 RNU6-806P-201ENST00000365147 105 ntBASIC0.35□□□□□ -2.35
RAB40BQ12829 Y_RNA.527-201ENST00000384573 102 ntBASIC0.35□□□□□ -2.35
RAB40BQ12829 SNORA8.3-201ENST00000384679 139 ntBASIC0.35□□□□□ -2.35
RAB40BQ12829 MIR588-201ENST00000384900 83 ntBASIC0.35□□□□□ -2.35
RAB40BQ12829 MIR938-201ENST00000401216 83 ntBASIC0.35□□□□□ -2.35
RAB40BQ12829 MIR18B-201ENST00000454574 71 ntBASIC0.35□□□□□ -2.35
RAB40BQ12829 RNU7-56P-201ENST00000458744 62 ntBASIC0.35□□□□□ -2.35
RAB40BQ12829 SNORA68.3-201ENST00000515906 83 ntBASIC0.35□□□□□ -2.35
RAB40BQ12829 RNU6-1143P-201ENST00000516125 104 ntBASIC0.35□□□□□ -2.35
RAB40BQ12829 RNU6-504P-201ENST00000516568 104 ntBASIC0.35□□□□□ -2.35
RAB40BQ12829 AP003733.2-201ENST00000529409 171 ntBASIC0.35□□□□□ -2.35
RAB40BQ12829 AC113195.1-201ENST00000579952 141 ntBASIC0.35□□□□□ -2.35
RAB40BQ12829 MIR5688-201ENST00000580619 83 ntBASIC0.35□□□□□ -2.35
RAB40BQ12829 AC134503.1-201ENST00000633048 54 ntBASIC0.35□□□□□ -2.35
RAB40BQ12829 Y_RNA.152-201ENST00000363578 100 ntBASIC0.34□□□□□ -2.36
RAB40BQ12829 Y_RNA.158-201ENST00000363651 101 ntBASIC0.34□□□□□ -2.36
RAB40BQ12829 Y_RNA.229-201ENST00000364347 113 ntBASIC0.34□□□□□ -2.36
RAB40BQ12829 SNORA50A-201ENST00000384225 134 ntBASIC0.34□□□□□ -2.36
RAB40BQ12829 RNU6-1165P-201ENST00000410119 107 ntBASIC0.34□□□□□ -2.36
RAB40BQ12829 MTCO2P12-201ENST00000427426 682 ntBASIC0.34□□□□□ -2.36
RAB40BQ12829 AC098934.3-201ENST00000430450 190 ntBASIC0.34□□□□□ -2.36
RAB40BQ12829 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.34□□□□□ -2.36
RAB40BQ12829 MIR4711-201ENST00000578274 70 ntBASIC0.34□□□□□ -2.36
RAB40BQ12829 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.33□□□□□ -2.36
RAB40BQ12829 UBE2WP1-201ENST00000362030 340 ntBASIC0.33□□□□□ -2.36
RAB40BQ12829 Y_RNA.26-201ENST00000362539 101 ntBASIC0.33□□□□□ -2.36
RAB40BQ12829 Y_RNA.64-201ENST00000362845 102 ntBASIC0.33□□□□□ -2.36
RAB40BQ12829 RNU6-1309P-201ENST00000363305 108 ntBASIC0.33□□□□□ -2.36
RAB40BQ12829 RNU6-364P-201ENST00000384387 107 ntBASIC0.33□□□□□ -2.36
RAB40BQ12829 MIR489-201ENST00000384923 84 ntBASIC0.33□□□□□ -2.36
RAB40BQ12829 SNORA26-201ENST00000391286 122 ntBASIC0.33□□□□□ -2.36
RAB40BQ12829 MIR548P-201ENST00000408336 84 ntBASIC0.33□□□□□ -2.36
RAB40BQ12829 MIR548I3-201ENST00000408378 149 ntBASIC0.33□□□□□ -2.36
RAB40BQ12829 MIR1257-201ENST00000408490 117 ntBASIC0.33□□□□□ -2.36
RAB40BQ12829 RNU6-602P-201ENST00000411155 105 ntBASIC0.33□□□□□ -2.36
RAB40BQ12829 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.33□□□□□ -2.36
RAB40BQ12829 AL138752.1-201ENST00000452964 351 ntBASIC0.33□□□□□ -2.36
RAB40BQ12829 RNU7-96P-201ENST00000459535 64 ntBASIC0.33□□□□□ -2.36
RAB40BQ12829 SERF1AP1-201ENST00000514575 187 ntBASIC0.33□□□□□ -2.36
RAB40BQ12829 RNA5SP436-201ENST00000516020 115 ntBASIC0.33□□□□□ -2.36
RAB40BQ12829 Y_RNA.711-201ENST00000516993 102 ntBASIC0.33□□□□□ -2.36
RAB40BQ12829 AC092634.7-201ENST00000621022 103 ntBASIC0.33□□□□□ -2.36
RAB40BQ12829 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.33□□□□□ -2.36
RAB40BQ12829 AL589743.1-201ENST00000551932 2712 ntBASIC0.33□□□□□ -2.36
RAB40BQ12829 Y_RNA.7-201ENST00000362352 102 ntBASIC0.32□□□□□ -2.36
RAB40BQ12829 RNU6-211P-201ENST00000384047 107 ntBASIC0.32□□□□□ -2.36
RAB40BQ12829 RNU6-342P-201ENST00000384521 104 ntBASIC0.32□□□□□ -2.36
RAB40BQ12829 Y_RNA.572-201ENST00000384757 98 ntBASIC0.32□□□□□ -2.36
RAB40BQ12829 MIR125B2-201ENST00000385128 89 ntBASIC0.32□□□□□ -2.36
RAB40BQ12829 snoU13.2-201ENST00000459201 104 ntBASIC0.32□□□□□ -2.36
RAB40BQ12829 RNU6-1299P-201ENST00000516316 100 ntBASIC0.32□□□□□ -2.36
RAB40BQ12829 SCARNA24.2-201ENST00000516968 130 ntBASIC0.32□□□□□ -2.36
RAB40BQ12829 AP001094.1-201ENST00000579805 193 ntBASIC0.32□□□□□ -2.36
RAB40BQ12829 AC243829.6-201ENST00000612652 106 ntBASIC0.32□□□□□ -2.36
RAB40BQ12829 MIRLET7D-201ENST00000362263 87 ntBASIC0.31□□□□□ -2.36
RAB40BQ12829 Y_RNA.84-201ENST00000363011 104 ntBASIC0.31□□□□□ -2.36
RAB40BQ12829 Y_RNA.138-201ENST00000363462 102 ntBASIC0.31□□□□□ -2.36
RAB40BQ12829 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.31□□□□□ -2.36
RAB40BQ12829 RNU6-1319P-201ENST00000390855 104 ntBASIC0.31□□□□□ -2.36
RAB40BQ12829 RNU6-747P-201ENST00000390928 104 ntBASIC0.31□□□□□ -2.36
RAB40BQ12829 RNU6-679P-201ENST00000391003 106 ntBASIC0.31□□□□□ -2.36
RAB40BQ12829 SNORD77.3-201ENST00000391113 65 ntBASIC0.31□□□□□ -2.36
RAB40BQ12829 RNU6-241P-201ENST00000391148 104 ntBASIC0.31□□□□□ -2.36
RAB40BQ12829 RNU6-447P-201ENST00000410293 104 ntBASIC0.31□□□□□ -2.36
RAB40BQ12829 RNU6-1118P-201ENST00000410382 104 ntBASIC0.31□□□□□ -2.36
RAB40BQ12829 RNU6-1076P-201ENST00000410397 104 ntBASIC0.31□□□□□ -2.36
RAB40BQ12829 RNU6-355P-201ENST00000410427 104 ntBASIC0.31□□□□□ -2.36
RAB40BQ12829 RNU6-791P-201ENST00000410467 104 ntBASIC0.31□□□□□ -2.36
RAB40BQ12829 RNU6-705P-201ENST00000410601 104 ntBASIC0.31□□□□□ -2.36
RAB40BQ12829 RNU6-1100P-201ENST00000410691 104 ntBASIC0.31□□□□□ -2.36
RAB40BQ12829 RNU2-70P-201ENST00000410718 179 ntBASIC0.31□□□□□ -2.36
RAB40BQ12829 RNU6-860P-201ENST00000410860 104 ntBASIC0.31□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 264.4 ms