Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 MIR1297-201ENST00000637311 77 ntBASIC3.39□□□□□ -1.87
COL9A1P20849 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
COL9A1P20849 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.39□□□□□ -1.87
COL9A1P20849 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
COL9A1P20849 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.38□□□□□ -1.87
COL9A1P20849 SNORD115-3-201ENST00000363100 82 ntBASIC3.38□□□□□ -1.87
COL9A1P20849 RNY1P2-201ENST00000364820 117 ntBASIC3.38□□□□□ -1.87
COL9A1P20849 SNORD21-201ENST00000383953 95 ntBASIC3.38□□□□□ -1.87
COL9A1P20849 Y_RNA.648-201ENST00000459455 110 ntBASIC3.38□□□□□ -1.87
COL9A1P20849 Y_RNA.681-201ENST00000516445 113 ntBASIC3.38□□□□□ -1.87
COL9A1P20849 SCARNA16.3-201ENST00000516595 184 ntBASIC3.38□□□□□ -1.87
COL9A1P20849 RNU6-448P-201ENST00000517052 107 ntBASIC3.38□□□□□ -1.87
COL9A1P20849 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.38□□□□□ -1.87
COL9A1P20849 AL353997.5-201ENST00000618886 171 ntBASIC3.38□□□□□ -1.87
COL9A1P20849 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
COL9A1P20849 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
COL9A1P20849 AC009487.2-201ENST00000420969 6821 ntBASIC3.38□□□□□ -1.87
COL9A1P20849 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
COL9A1P20849 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
COL9A1P20849 AC093010.3-201ENST00000570269 15214 ntBASIC3.37□□□□□ -1.87
COL9A1P20849 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
COL9A1P20849 ANKRD18EP-201ENST00000405487 2632 ntBASIC3.37□□□□□ -1.87
COL9A1P20849 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.37□□□□□ -1.87
COL9A1P20849 RNU1-70P-201ENST00000362618 164 ntBASIC3.37□□□□□ -1.87
COL9A1P20849 AC006989.1-201ENST00000427212 131 ntBASIC3.37□□□□□ -1.87
COL9A1P20849 MIR486-1-201ENST00000612171 68 ntBASIC3.37□□□□□ -1.87
COL9A1P20849 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.37□□□□□ -1.87
COL9A1P20849 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
COL9A1P20849 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
COL9A1P20849 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.36□□□□□ -1.87
COL9A1P20849 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
COL9A1P20849 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.36□□□□□ -1.87
COL9A1P20849 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
COL9A1P20849 MIR184-201ENST00000384962 84 ntBASIC3.36□□□□□ -1.87
COL9A1P20849 AL023284.1-201ENST00000403956 276 ntBASIC3.36□□□□□ -1.87
COL9A1P20849 MIR1289-2-201ENST00000408360 111 ntBASIC3.36□□□□□ -1.87
COL9A1P20849 MIR1265-201ENST00000408444 86 ntBASIC3.36□□□□□ -1.87
COL9A1P20849 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.36□□□□□ -1.87
COL9A1P20849 AC022149.2-201ENST00000621061 203 ntBASIC3.36□□□□□ -1.87
COL9A1P20849 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
COL9A1P20849 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC3.35□□□□□ -1.87
COL9A1P20849 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
COL9A1P20849 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.35□□□□□ -1.87
COL9A1P20849 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
COL9A1P20849 RNU6-161P-201ENST00000363051 106 ntBASIC3.35□□□□□ -1.87
COL9A1P20849 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
COL9A1P20849 AL513328.1-201ENST00000446460 224 ntBASIC3.35□□□□□ -1.87
COL9A1P20849 RNU7-85P-201ENST00000458851 63 ntBASIC3.35□□□□□ -1.87
COL9A1P20849 RNU6-634P-201ENST00000459134 106 ntBASIC3.35□□□□□ -1.87
COL9A1P20849 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC3.35□□□□□ -1.87
COL9A1P20849 AC020914.4-201ENST00000597690 277 ntBASIC3.35□□□□□ -1.87
COL9A1P20849 AC008133.2-201ENST00000624540 351 ntBASIC3.35□□□□□ -1.87
COL9A1P20849 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.35□□□□□ -1.87
COL9A1P20849 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
COL9A1P20849 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.34□□□□□ -1.87
COL9A1P20849 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC3.34□□□□□ -1.87
COL9A1P20849 Y_RNA.264-201ENST00000364665 102 ntBASIC3.34□□□□□ -1.87
COL9A1P20849 SNORA9.2-201ENST00000365361 133 ntBASIC3.34□□□□□ -1.87
COL9A1P20849 SNORD38B-201ENST00000384690 67 ntBASIC3.34□□□□□ -1.87
COL9A1P20849 MIR196B-201ENST00000384852 84 ntBASIC3.34□□□□□ -1.87
COL9A1P20849 RNA5SP237-201ENST00000410414 113 ntBASIC3.34□□□□□ -1.87
COL9A1P20849 RNU2-59P-201ENST00000410482 191 ntBASIC3.34□□□□□ -1.87
COL9A1P20849 SNRPGP12-201ENST00000449481 213 ntBASIC3.34□□□□□ -1.87
COL9A1P20849 AC021506.2-201ENST00000612354 169 ntBASIC3.34□□□□□ -1.87
COL9A1P20849 SNORD38B-202ENST00000625943 69 ntBASIC3.34□□□□□ -1.87
COL9A1P20849 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.34□□□□□ -1.87
COL9A1P20849 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
COL9A1P20849 MAPK10-373ENST00000641983 6772 ntBASIC3.34□□□□□ -1.88
COL9A1P20849 RNU6-1237P-201ENST00000384777 107 ntBASIC3.33□□□□□ -1.88
COL9A1P20849 MIR520A-201ENST00000384862 85 ntBASIC3.33□□□□□ -1.88
COL9A1P20849 AL139132.1-201ENST00000431587 344 ntBASIC3.33□□□□□ -1.88
COL9A1P20849 RN7SL93P-201ENST00000463035 293 ntBASIC3.33□□□□□ -1.88
COL9A1P20849 RNU6-70P-201ENST00000516438 60 ntBASIC3.33□□□□□ -1.88
COL9A1P20849 AC141846.1-201ENST00000568348 142 ntBASIC3.33□□□□□ -1.88
COL9A1P20849 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC3.33□□□□□ -1.88
COL9A1P20849 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC3.33□□□□□ -1.88
COL9A1P20849 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.33□□□□□ -1.88
COL9A1P20849 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.32□□□□□ -1.88
COL9A1P20849 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.32□□□□□ -1.88
COL9A1P20849 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
COL9A1P20849 SNORA38-201ENST00000363946 132 ntBASIC3.32□□□□□ -1.88
COL9A1P20849 SNORA71.1-201ENST00000364523 117 ntBASIC3.32□□□□□ -1.88
COL9A1P20849 RNU6-811P-201ENST00000384069 107 ntBASIC3.32□□□□□ -1.88
COL9A1P20849 RNU7-170P-201ENST00000459303 61 ntBASIC3.32□□□□□ -1.88
COL9A1P20849 MIR4709-201ENST00000577272 72 ntBASIC3.32□□□□□ -1.88
COL9A1P20849 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
COL9A1P20849 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
COL9A1P20849 RNU6-571P-201ENST00000384128 107 ntBASIC3.31□□□□□ -1.88
COL9A1P20849 RNU6-649P-201ENST00000384463 107 ntBASIC3.31□□□□□ -1.88
COL9A1P20849 RNU2-7P-201ENST00000410794 178 ntBASIC3.31□□□□□ -1.88
COL9A1P20849 BX510359.4-201ENST00000423750 193 ntBASIC3.31□□□□□ -1.88
COL9A1P20849 RNU6-1108P-201ENST00000516308 104 ntBASIC3.31□□□□□ -1.88
COL9A1P20849 MIR4781-201ENST00000585250 76 ntBASIC3.31□□□□□ -1.88
COL9A1P20849 ZNF658B-202ENST00000615961 3375 ntBASIC3.31□□□□□ -1.88
COL9A1P20849 RNU5F-1-201ENST00000362507 117 ntBASIC3.3□□□□□ -1.88
COL9A1P20849 SNORA72.6-201ENST00000384520 129 ntBASIC3.3□□□□□ -1.88
COL9A1P20849 RNU6-687P-201ENST00000516443 89 ntBASIC3.3□□□□□ -1.88
COL9A1P20849 MIR4764-201ENST00000580680 88 ntBASIC3.3□□□□□ -1.88
COL9A1P20849 AC090897.1-201ENST00000580909 226 ntBASIC3.3□□□□□ -1.88
COL9A1P20849 AL357312.1-201ENST00000603879 298 ntBASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 182 ms