Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 SNORA25.15-201ENST00000516487 89 ntBASIC1.7□□□□□ -2.14
FOXN3O00409 IGHVIII-67-2-201ENST00000519849 88 ntBASIC1.7□□□□□ -2.14
FOXN3O00409 MIR3683-201ENST00000580847 82 ntBASIC1.7□□□□□ -2.14
FOXN3O00409 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.69□□□□□ -2.14
FOXN3O00409 Y_RNA.71-201ENST00000362892 104 ntBASIC1.69□□□□□ -2.14
FOXN3O00409 RNU1-17P-201ENST00000363022 152 ntBASIC1.69□□□□□ -2.14
FOXN3O00409 Y_RNA.140-201ENST00000363474 103 ntBASIC1.69□□□□□ -2.14
FOXN3O00409 SNORD77.3-201ENST00000391113 65 ntBASIC1.69□□□□□ -2.14
FOXN3O00409 RPS27P16-201ENST00000425758 201 ntBASIC1.69□□□□□ -2.14
FOXN3O00409 RNU7-107P-201ENST00000459121 61 ntBASIC1.69□□□□□ -2.14
FOXN3O00409 RNU6-1333P-201ENST00000516162 93 ntBASIC1.69□□□□□ -2.14
FOXN3O00409 RNU6-830P-201ENST00000516353 107 ntBASIC1.69□□□□□ -2.14
FOXN3O00409 AC090049.2-201ENST00000550377 109 ntBASIC1.69□□□□□ -2.14
FOXN3O00409 AC131055.1-201ENST00000584626 316 ntBASIC1.69□□□□□ -2.14
FOXN3O00409 AL365205.2-201ENST00000594586 68 ntBASIC1.69□□□□□ -2.14
FOXN3O00409 AL121890.5-201ENST00000620848 304 ntBASIC1.69□□□□□ -2.14
FOXN3O00409 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.69□□□□□ -2.14
FOXN3O00409 RNU6-309P-201ENST00000364573 106 ntBASIC1.68□□□□□ -2.14
FOXN3O00409 SNORD24-201ENST00000383884 75 ntBASIC1.68□□□□□ -2.14
FOXN3O00409 Y_RNA.547-201ENST00000384654 119 ntBASIC1.68□□□□□ -2.14
FOXN3O00409 RNU2-51P-201ENST00000410708 197 ntBASIC1.68□□□□□ -2.14
FOXN3O00409 RNU6-313P-201ENST00000516317 112 ntBASIC1.68□□□□□ -2.14
FOXN3O00409 Y_RNA.690-201ENST00000516603 95 ntBASIC1.68□□□□□ -2.14
FOXN3O00409 SNORD36C-201ENST00000516733 66 ntBASIC1.68□□□□□ -2.14
FOXN3O00409 U7.2-201ENST00000607576 63 ntBASIC1.68□□□□□ -2.14
FOXN3O00409 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.67□□□□□ -2.14
FOXN3O00409 MIR624-201ENST00000385217 97 ntBASIC1.67□□□□□ -2.14
FOXN3O00409 RNU6-62P-201ENST00000516526 102 ntBASIC1.67□□□□□ -2.14
FOXN3O00409 RNU6-1149P-201ENST00000516810 97 ntBASIC1.67□□□□□ -2.14
FOXN3O00409 MIR548AI-201ENST00000579940 88 ntBASIC1.67□□□□□ -2.14
FOXN3O00409 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.67□□□□□ -2.14
FOXN3O00409 AL513534.2-201ENST00000603836 250 ntBASIC1.67□□□□□ -2.14
FOXN3O00409 TUG1_4.1-201ENST00000619464 181 ntBASIC1.67□□□□□ -2.14
FOXN3O00409 SNORD115-28-201ENST00000363931 81 ntBASIC1.66□□□□□ -2.14
FOXN3O00409 SNORD18B-201ENST00000365659 72 ntBASIC1.66□□□□□ -2.14
FOXN3O00409 SNORD41-201ENST00000386967 70 ntBASIC1.66□□□□□ -2.14
FOXN3O00409 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.66□□□□□ -2.14
FOXN3O00409 AL512310.8-201ENST00000550183 120 ntBASIC1.66□□□□□ -2.14
FOXN3O00409 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC1.66□□□□□ -2.14
FOXN3O00409 AP001340.1-201ENST00000624405 217 ntBASIC1.66□□□□□ -2.14
FOXN3O00409 MIR342-201ENST00000362212 99 ntBASIC1.65□□□□□ -2.15
FOXN3O00409 Y_RNA.37-201ENST00000362606 108 ntBASIC1.65□□□□□ -2.15
FOXN3O00409 MIR539-201ENST00000365690 78 ntBASIC1.65□□□□□ -2.15
FOXN3O00409 SNORD116-14-201ENST00000383894 92 ntBASIC1.65□□□□□ -2.15
FOXN3O00409 SNORD116-17-201ENST00000383929 92 ntBASIC1.65□□□□□ -2.15
FOXN3O00409 SNORD116-15-201ENST00000384445 92 ntBASIC1.65□□□□□ -2.15
FOXN3O00409 RNU6-1081P-201ENST00000384537 107 ntBASIC1.65□□□□□ -2.15
FOXN3O00409 SNORD116-19-201ENST00000384729 92 ntBASIC1.65□□□□□ -2.15
FOXN3O00409 RNU6-1168P-201ENST00000390831 104 ntBASIC1.65□□□□□ -2.15
FOXN3O00409 AC245517.4-201ENST00000448601 281 ntBASIC1.65□□□□□ -2.15
FOXN3O00409 RN7SKP88-201ENST00000516847 250 ntBASIC1.65□□□□□ -2.15
FOXN3O00409 RNU6-902P-201ENST00000517212 91 ntBASIC1.65□□□□□ -2.15
FOXN3O00409 RNU7-181P-201ENST00000517234 74 ntBASIC1.65□□□□□ -2.15
FOXN3O00409 AP000942.3-201ENST00000603702 160 ntBASIC1.65□□□□□ -2.15
FOXN3O00409 7SK.8-201ENST00000612110 250 ntBASIC1.65□□□□□ -2.15
FOXN3O00409 7SK.11-201ENST00000615477 250 ntBASIC1.65□□□□□ -2.15
FOXN3O00409 7SK.13-201ENST00000622040 250 ntBASIC1.65□□□□□ -2.15
FOXN3O00409 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.64□□□□□ -2.15
FOXN3O00409 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC1.64□□□□□ -2.15
FOXN3O00409 AL391516.1-201ENST00000554380 2449 ntBASIC1.64□□□□□ -2.15
FOXN3O00409 RNU6-1290P-201ENST00000362957 109 ntBASIC1.64□□□□□ -2.15
FOXN3O00409 Y_RNA.120-201ENST00000363304 110 ntBASIC1.64□□□□□ -2.15
FOXN3O00409 Y_RNA.127-201ENST00000363386 109 ntBASIC1.64□□□□□ -2.15
FOXN3O00409 RNA5SP190-201ENST00000365222 118 ntBASIC1.64□□□□□ -2.15
FOXN3O00409 MIR1323-201ENST00000408090 73 ntBASIC1.64□□□□□ -2.15
FOXN3O00409 RNU6-735P-201ENST00000410612 107 ntBASIC1.64□□□□□ -2.15
FOXN3O00409 AC008267.6-201ENST00000441664 139 ntBASIC1.64□□□□□ -2.15
FOXN3O00409 RPS29P23-201ENST00000458635 123 ntBASIC1.64□□□□□ -2.15
FOXN3O00409 RNU6-479P-201ENST00000516348 105 ntBASIC1.64□□□□□ -2.15
FOXN3O00409 SNORD111.1-201ENST00000516421 86 ntBASIC1.64□□□□□ -2.15
FOXN3O00409 Y_RNA.692-201ENST00000516627 105 ntBASIC1.64□□□□□ -2.15
FOXN3O00409 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.64□□□□□ -2.15
FOXN3O00409 CYP3A52P-201ENST00000563326 91 ntBASIC1.64□□□□□ -2.15
FOXN3O00409 AL022345.2-201ENST00000606307 135 ntBASIC1.64□□□□□ -2.15
FOXN3O00409 GHRLOS.1-201ENST00000610995 70 ntBASIC1.64□□□□□ -2.15
FOXN3O00409 Y_RNA.114-201ENST00000363265 113 ntBASIC1.63□□□□□ -2.15
FOXN3O00409 Y_RNA.338-201ENST00000365320 114 ntBASIC1.63□□□□□ -2.15
FOXN3O00409 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.63□□□□□ -2.15
FOXN3O00409 MIR1304-201ENST00000408243 91 ntBASIC1.63□□□□□ -2.15
FOXN3O00409 RNU6-938P-201ENST00000411285 103 ntBASIC1.63□□□□□ -2.15
FOXN3O00409 Y_RNA.651-201ENST00000459380 103 ntBASIC1.63□□□□□ -2.15
FOXN3O00409 RPL30P7-201ENST00000479312 323 ntBASIC1.63□□□□□ -2.15
FOXN3O00409 RNU4-57P-201ENST00000515980 135 ntBASIC1.63□□□□□ -2.15
FOXN3O00409 Y_RNA.676-201ENST00000516393 96 ntBASIC1.63□□□□□ -2.15
FOXN3O00409 RNU6-1061P-201ENST00000516530 99 ntBASIC1.63□□□□□ -2.15
FOXN3O00409 MIR3664-201ENST00000579074 99 ntBASIC1.63□□□□□ -2.15
FOXN3O00409 MIR5197-201ENST00000583721 112 ntBASIC1.63□□□□□ -2.15
FOXN3O00409 AC108081.1-201ENST00000604358 221 ntBASIC1.63□□□□□ -2.15
FOXN3O00409 RNU6-1189P-201ENST00000383958 107 ntBASIC1.62□□□□□ -2.15
FOXN3O00409 RNU6-80P-201ENST00000384195 107 ntBASIC1.62□□□□□ -2.15
FOXN3O00409 MIR320A-201ENST00000385302 82 ntBASIC1.62□□□□□ -2.15
FOXN3O00409 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.62□□□□□ -2.15
FOXN3O00409 SNORD13-201ENST00000459299 104 ntBASIC1.62□□□□□ -2.15
FOXN3O00409 SNORD123-201ENST00000459473 70 ntBASIC1.62□□□□□ -2.15
FOXN3O00409 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC1.62□□□□□ -2.15
FOXN3O00409 RNU6-772P-201ENST00000516042 105 ntBASIC1.62□□□□□ -2.15
FOXN3O00409 SCARNA15-202ENST00000516881 127 ntBASIC1.62□□□□□ -2.15
FOXN3O00409 Y_RNA.757-201ENST00000578934 114 ntBASIC1.62□□□□□ -2.15
FOXN3O00409 BX248123.2-201ENST00000606318 124 ntBASIC1.62□□□□□ -2.15
FOXN3O00409 AC134878.1-201ENST00000619901 243 ntBASIC1.62□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 363.9 ms