Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 RNU7-149P-201ENST00000516739 59 ntBASIC1.15□□□□□ -2.23
ZNF541Q9H0D2 AC100767.1-201ENST00000528178 123 ntBASIC1.15□□□□□ -2.23
ZNF541Q9H0D2 AL096861.1-201ENST00000610899 123 ntBASIC1.15□□□□□ -2.23
ZNF541Q9H0D2 U4.1-201ENST00000620349 87 ntBASIC1.15□□□□□ -2.23
ZNF541Q9H0D2 MIR626-201ENST00000385032 94 ntBASIC1.14□□□□□ -2.23
ZNF541Q9H0D2 MIR526A2-201ENST00000390198 65 ntBASIC1.14□□□□□ -2.23
ZNF541Q9H0D2 AC245047.8-201ENST00000456455 284 ntBASIC1.14□□□□□ -2.23
ZNF541Q9H0D2 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC1.13□□□□□ -2.23
ZNF541Q9H0D2 Y_RNA.477-201ENST00000384352 108 ntBASIC1.13□□□□□ -2.23
ZNF541Q9H0D2 Y_RNA.539-201ENST00000384635 107 ntBASIC1.13□□□□□ -2.23
ZNF541Q9H0D2 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC1.13□□□□□ -2.23
ZNF541Q9H0D2 SNORD116-28-201ENST00000516123 91 ntBASIC1.13□□□□□ -2.23
ZNF541Q9H0D2 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.13□□□□□ -2.23
ZNF541Q9H0D2 AC062037.2-201ENST00000610137 73 ntBASIC1.13□□□□□ -2.23
ZNF541Q9H0D2 7SK.10-201ENST00000621414 298 ntBASIC1.13□□□□□ -2.23
ZNF541Q9H0D2 AL442644.1-201ENST00000454390 3105 ntBASIC1.12□□□□□ -2.23
ZNF541Q9H0D2 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.12□□□□□ -2.23
ZNF541Q9H0D2 SNORA25.3-201ENST00000363205 127 ntBASIC1.12□□□□□ -2.23
ZNF541Q9H0D2 snoU2_19.4-201ENST00000364329 80 ntBASIC1.12□□□□□ -2.23
ZNF541Q9H0D2 SNORA1.2-201ENST00000365189 134 ntBASIC1.12□□□□□ -2.23
ZNF541Q9H0D2 Y_RNA.330-201ENST00000365230 109 ntBASIC1.12□□□□□ -2.23
ZNF541Q9H0D2 Y_RNA.350-201ENST00000365409 98 ntBASIC1.12□□□□□ -2.23
ZNF541Q9H0D2 Y_RNA.416-201ENST00000384014 113 ntBASIC1.12□□□□□ -2.23
ZNF541Q9H0D2 Y_RNA.452-201ENST00000384202 108 ntBASIC1.12□□□□□ -2.23
ZNF541Q9H0D2 RNU6-463P-201ENST00000384340 107 ntBASIC1.12□□□□□ -2.23
ZNF541Q9H0D2 SNORA80D-201ENST00000384488 135 ntBASIC1.12□□□□□ -2.23
ZNF541Q9H0D2 U8.17-201ENST00000391292 132 ntBASIC1.12□□□□□ -2.23
ZNF541Q9H0D2 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.12□□□□□ -2.23
ZNF541Q9H0D2 AC107297.1-201ENST00000459991 176 ntBASIC1.12□□□□□ -2.23
ZNF541Q9H0D2 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC1.12□□□□□ -2.23
ZNF541Q9H0D2 RN7SKP164-201ENST00000516138 266 ntBASIC1.12□□□□□ -2.23
ZNF541Q9H0D2 RNA5SP330-201ENST00000517096 96 ntBASIC1.12□□□□□ -2.23
ZNF541Q9H0D2 MIR3128-201ENST00000581957 66 ntBASIC1.12□□□□□ -2.23
ZNF541Q9H0D2 MIR548AR-201ENST00000582191 57 ntBASIC1.12□□□□□ -2.23
ZNF541Q9H0D2 MIR3149-201ENST00000584629 83 ntBASIC1.12□□□□□ -2.23
ZNF541Q9H0D2 MIR3192-201ENST00000584920 77 ntBASIC1.12□□□□□ -2.23
ZNF541Q9H0D2 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC1.12□□□□□ -2.23
ZNF541Q9H0D2 AL365265.1-201ENST00000621045 234 ntBASIC1.12□□□□□ -2.23
ZNF541Q9H0D2 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.11□□□□□ -2.23
ZNF541Q9H0D2 RNU6-653P-201ENST00000363074 106 ntBASIC1.11□□□□□ -2.23
ZNF541Q9H0D2 Y_RNA.144-201ENST00000363521 113 ntBASIC1.11□□□□□ -2.23
ZNF541Q9H0D2 SNORD27-201ENST00000363981 72 ntBASIC1.11□□□□□ -2.23
ZNF541Q9H0D2 Y_RNA.229-201ENST00000364347 113 ntBASIC1.11□□□□□ -2.23
ZNF541Q9H0D2 Y_RNA.304-201ENST00000365011 112 ntBASIC1.11□□□□□ -2.23
ZNF541Q9H0D2 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.11□□□□□ -2.23
ZNF541Q9H0D2 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.11□□□□□ -2.23
ZNF541Q9H0D2 MIR548H3-201ENST00000408771 118 ntBASIC1.11□□□□□ -2.23
ZNF541Q9H0D2 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC1.11□□□□□ -2.23
ZNF541Q9H0D2 snoU13.25-201ENST00000458945 104 ntBASIC1.11□□□□□ -2.23
ZNF541Q9H0D2 SCARNA8-201ENST00000515924 131 ntBASIC1.11□□□□□ -2.23
ZNF541Q9H0D2 RNU7-181P-201ENST00000517234 74 ntBASIC1.11□□□□□ -2.23
ZNF541Q9H0D2 MIR5688-201ENST00000580619 83 ntBASIC1.11□□□□□ -2.23
ZNF541Q9H0D2 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.11□□□□□ -2.23
ZNF541Q9H0D2 AC108706.1-201ENST00000611053 297 ntBASIC1.11□□□□□ -2.23
ZNF541Q9H0D2 MIR924-201ENST00000638017 53 ntBASIC1.11□□□□□ -2.23
ZNF541Q9H0D2 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC1.11□□□□□ -2.23
ZNF541Q9H0D2 MIR103A2-201ENST00000362154 78 ntBASIC1.1□□□□□ -2.23
ZNF541Q9H0D2 Y_RNA.20-201ENST00000362479 113 ntBASIC1.1□□□□□ -2.23
ZNF541Q9H0D2 Y_RNA.292-201ENST00000364904 97 ntBASIC1.1□□□□□ -2.23
ZNF541Q9H0D2 RNU6-702P-201ENST00000364982 107 ntBASIC1.1□□□□□ -2.23
ZNF541Q9H0D2 Y_RNA.307-201ENST00000365022 117 ntBASIC1.1□□□□□ -2.23
ZNF541Q9H0D2 Y_RNA.370-201ENST00000365589 108 ntBASIC1.1□□□□□ -2.23
ZNF541Q9H0D2 SNORA70.7-201ENST00000384159 133 ntBASIC1.1□□□□□ -2.23
ZNF541Q9H0D2 MT-TT-201ENST00000387460 66 ntBASIC1.1□□□□□ -2.23
ZNF541Q9H0D2 SNORD58.1-201ENST00000391313 66 ntBASIC1.1□□□□□ -2.23
ZNF541Q9H0D2 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC1.1□□□□□ -2.23
ZNF541Q9H0D2 RNU7-41P-201ENST00000515917 61 ntBASIC1.1□□□□□ -2.23
ZNF541Q9H0D2 SNORD77.4-201ENST00000516158 81 ntBASIC1.1□□□□□ -2.23
ZNF541Q9H0D2 RNU6-453P-201ENST00000516819 85 ntBASIC1.1□□□□□ -2.23
ZNF541Q9H0D2 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.1□□□□□ -2.23
ZNF541Q9H0D2 MIR4662B-201ENST00000579498 81 ntBASIC1.1□□□□□ -2.23
ZNF541Q9H0D2 AC006441.5-201ENST00000612680 209 ntBASIC1.1□□□□□ -2.23
ZNF541Q9H0D2 AL442067.1-201ENST00000613261 223 ntBASIC1.1□□□□□ -2.23
ZNF541Q9H0D2 MIR6513-201ENST00000621188 64 ntBASIC1.1□□□□□ -2.23
ZNF541Q9H0D2 AC008163.1-202ENST00000636004 2889 ntBASIC1.09□□□□□ -2.24
ZNF541Q9H0D2 Y_RNA.60-201ENST00000362831 98 ntBASIC1.09□□□□□ -2.24
ZNF541Q9H0D2 Y_RNA.447-201ENST00000384184 113 ntBASIC1.09□□□□□ -2.24
ZNF541Q9H0D2 MIR570-201ENST00000384917 97 ntBASIC1.09□□□□□ -2.24
ZNF541Q9H0D2 MRPL35P3-201ENST00000421557 364 ntBASIC1.09□□□□□ -2.24
ZNF541Q9H0D2 RNY3P16-201ENST00000516338 101 ntBASIC1.09□□□□□ -2.24
ZNF541Q9H0D2 RNA5SP404-201ENST00000517118 132 ntBASIC1.09□□□□□ -2.24
ZNF541Q9H0D2 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC1.09□□□□□ -2.24
ZNF541Q9H0D2 AL109933.3-201ENST00000619095 188 ntBASIC1.09□□□□□ -2.24
ZNF541Q9H0D2 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.09□□□□□ -2.24
ZNF541Q9H0D2 MIR4251-201ENST00000635819 61 ntBASIC1.09□□□□□ -2.24
ZNF541Q9H0D2 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.09□□□□□ -2.24
ZNF541Q9H0D2 Y_RNA.65-201ENST00000362846 100 ntBASIC1.08□□□□□ -2.24
ZNF541Q9H0D2 RNA5SP257-201ENST00000363023 116 ntBASIC1.08□□□□□ -2.24
ZNF541Q9H0D2 RNA5SP264-201ENST00000363115 107 ntBASIC1.08□□□□□ -2.24
ZNF541Q9H0D2 Y_RNA.258-201ENST00000364613 105 ntBASIC1.08□□□□□ -2.24
ZNF541Q9H0D2 RNU6-1138P-201ENST00000365359 106 ntBASIC1.08□□□□□ -2.24
ZNF541Q9H0D2 snosnR66.1-201ENST00000391095 99 ntBASIC1.08□□□□□ -2.24
ZNF541Q9H0D2 AC063976.4-201ENST00000421971 163 ntBASIC1.08□□□□□ -2.24
ZNF541Q9H0D2 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.08□□□□□ -2.24
ZNF541Q9H0D2 Y_RNA.666-201ENST00000516187 112 ntBASIC1.08□□□□□ -2.24
ZNF541Q9H0D2 RNU6-830P-201ENST00000516353 107 ntBASIC1.08□□□□□ -2.24
ZNF541Q9H0D2 RNA5SP121-201ENST00000516537 101 ntBASIC1.08□□□□□ -2.24
ZNF541Q9H0D2 RNA5SP395-201ENST00000516567 118 ntBASIC1.08□□□□□ -2.24
ZNF541Q9H0D2 RNU6-365P-201ENST00000517113 106 ntBASIC1.08□□□□□ -2.24
ZNF541Q9H0D2 AC010487.4-201ENST00000637027 61 ntBASIC1.08□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms