Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 FAM106DP-201ENST00000586416 501 ntBASIC1.83□□□□□ -2.12
SMARCA1P28370 MIR6844-201ENST00000637122 62 ntBASIC1.83□□□□□ -2.12
SMARCA1P28370 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
SMARCA1P28370 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.83□□□□□ -2.12
SMARCA1P28370 SNORD33-201ENST00000362761 85 ntBASIC1.82□□□□□ -2.12
SMARCA1P28370 RNU6-774P-201ENST00000363238 107 ntBASIC1.82□□□□□ -2.12
SMARCA1P28370 RNU4-11P-201ENST00000365287 132 ntBASIC1.82□□□□□ -2.12
SMARCA1P28370 MIR517C-201ENST00000385103 95 ntBASIC1.82□□□□□ -2.12
SMARCA1P28370 MIR653-201ENST00000385279 96 ntBASIC1.82□□□□□ -2.12
SMARCA1P28370 SNORD77.3-201ENST00000391113 65 ntBASIC1.82□□□□□ -2.12
SMARCA1P28370 RNU6-588P-201ENST00000410281 105 ntBASIC1.82□□□□□ -2.12
SMARCA1P28370 RNU6-346P-201ENST00000516288 111 ntBASIC1.82□□□□□ -2.12
SMARCA1P28370 RNU6-970P-201ENST00000516312 107 ntBASIC1.82□□□□□ -2.12
SMARCA1P28370 AL365205.2-201ENST00000594586 68 ntBASIC1.82□□□□□ -2.12
SMARCA1P28370 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
SMARCA1P28370 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
SMARCA1P28370 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
SMARCA1P28370 Y_RNA.37-201ENST00000362606 108 ntBASIC1.81□□□□□ -2.12
SMARCA1P28370 SNORD115-28-201ENST00000363931 81 ntBASIC1.81□□□□□ -2.12
SMARCA1P28370 SNORA25.7-201ENST00000364375 127 ntBASIC1.81□□□□□ -2.12
SMARCA1P28370 SNORD1A-201ENST00000364968 72 ntBASIC1.81□□□□□ -2.12
SMARCA1P28370 Y_RNA.508-201ENST00000384502 114 ntBASIC1.81□□□□□ -2.12
SMARCA1P28370 SUMO1P3-201ENST00000439961 304 ntBASIC1.81□□□□□ -2.12
SMARCA1P28370 MIR3646-201ENST00000578301 84 ntBASIC1.81□□□□□ -2.12
SMARCA1P28370 AL365434.2-201ENST00000607979 234 ntBASIC1.81□□□□□ -2.12
SMARCA1P28370 MIR8063-201ENST00000621930 81 ntBASIC1.81□□□□□ -2.12
SMARCA1P28370 MIR376A2-201ENST00000636782 80 ntBASIC1.81□□□□□ -2.12
SMARCA1P28370 SNORA2.2-201ENST00000365473 135 ntBASIC1.8□□□□□ -2.12
SMARCA1P28370 RNU6-125P-201ENST00000384505 107 ntBASIC1.8□□□□□ -2.12
SMARCA1P28370 Y_RNA.542-201ENST00000384641 111 ntBASIC1.8□□□□□ -2.12
SMARCA1P28370 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.8□□□□□ -2.12
SMARCA1P28370 AC245517.4-201ENST00000448601 281 ntBASIC1.8□□□□□ -2.12
SMARCA1P28370 SNORD36C-201ENST00000516733 66 ntBASIC1.8□□□□□ -2.12
SMARCA1P28370 RNU7-181P-201ENST00000517234 74 ntBASIC1.8□□□□□ -2.12
SMARCA1P28370 AC134878.1-201ENST00000619901 243 ntBASIC1.8□□□□□ -2.12
SMARCA1P28370 MTND1P7-201ENST00000632801 297 ntBASIC1.8□□□□□ -2.12
SMARCA1P28370 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
SMARCA1P28370 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
SMARCA1P28370 RNU6-60P-201ENST00000364792 103 ntBASIC1.79□□□□□ -2.12
SMARCA1P28370 RNU6-1292P-201ENST00000383856 107 ntBASIC1.79□□□□□ -2.12
SMARCA1P28370 Y_RNA.400-201ENST00000383963 111 ntBASIC1.79□□□□□ -2.12
SMARCA1P28370 SNORD37.2-201ENST00000391075 66 ntBASIC1.79□□□□□ -2.12
SMARCA1P28370 SNORA17.3-201ENST00000391159 129 ntBASIC1.79□□□□□ -2.12
SMARCA1P28370 U8.17-201ENST00000391292 132 ntBASIC1.79□□□□□ -2.12
SMARCA1P28370 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC1.79□□□□□ -2.12
SMARCA1P28370 AC090049.2-201ENST00000550377 109 ntBASIC1.79□□□□□ -2.12
SMARCA1P28370 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.79□□□□□ -2.12
SMARCA1P28370 MIR3133-201ENST00000583157 78 ntBASIC1.79□□□□□ -2.12
SMARCA1P28370 BX248123.2-201ENST00000606318 124 ntBASIC1.79□□□□□ -2.12
SMARCA1P28370 Y_RNA.215-201ENST00000364204 112 ntBASIC1.78□□□□□ -2.12
SMARCA1P28370 RNY1P5-201ENST00000383890 115 ntBASIC1.78□□□□□ -2.12
SMARCA1P28370 RNU6-746P-201ENST00000384112 109 ntBASIC1.78□□□□□ -2.12
SMARCA1P28370 Y_RNA.494-201ENST00000384432 111 ntBASIC1.78□□□□□ -2.12
SMARCA1P28370 SNORA75.5-201ENST00000391291 81 ntBASIC1.78□□□□□ -2.12
SMARCA1P28370 AC108667.1-201ENST00000428618 249 ntBASIC1.78□□□□□ -2.12
SMARCA1P28370 SNORD123-201ENST00000459473 70 ntBASIC1.78□□□□□ -2.12
SMARCA1P28370 AC079140.2-201ENST00000506193 142 ntBASIC1.78□□□□□ -2.12
SMARCA1P28370 SNORA18.7-201ENST00000516910 131 ntBASIC1.78□□□□□ -2.12
SMARCA1P28370 SNORD53B-201ENST00000577887 78 ntBASIC1.78□□□□□ -2.12
SMARCA1P28370 RNU6-997P-201ENST00000384725 107 ntBASIC1.77□□□□□ -2.13
SMARCA1P28370 MIR624-201ENST00000385217 97 ntBASIC1.77□□□□□ -2.13
SMARCA1P28370 SNORD28B-201ENST00000390993 75 ntBASIC1.77□□□□□ -2.13
SMARCA1P28370 RNU7-197P-201ENST00000458836 62 ntBASIC1.77□□□□□ -2.13
SMARCA1P28370 AC112693.2-201ENST00000556538 232 ntBASIC1.77□□□□□ -2.13
SMARCA1P28370 MIR548AR-201ENST00000582191 57 ntBASIC1.77□□□□□ -2.13
SMARCA1P28370 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.77□□□□□ -2.13
SMARCA1P28370 MIR378A-201ENST00000362177 66 ntBASIC1.76□□□□□ -2.13
SMARCA1P28370 Y_RNA.251-201ENST00000364551 99 ntBASIC1.76□□□□□ -2.13
SMARCA1P28370 Y_RNA.497-201ENST00000384447 98 ntBASIC1.76□□□□□ -2.13
SMARCA1P28370 SNORD41-201ENST00000386967 70 ntBASIC1.76□□□□□ -2.13
SMARCA1P28370 RNA5SP127-201ENST00000411051 133 ntBASIC1.76□□□□□ -2.13
SMARCA1P28370 AC027119.1-201ENST00000440877 241 ntBASIC1.76□□□□□ -2.13
SMARCA1P28370 AC087499.4-201ENST00000448505 178 ntBASIC1.76□□□□□ -2.13
SMARCA1P28370 RNA5SP445-201ENST00000515889 115 ntBASIC1.76□□□□□ -2.13
SMARCA1P28370 SNORA18.4-201ENST00000516440 124 ntBASIC1.76□□□□□ -2.13
SMARCA1P28370 RNU6-922P-201ENST00000516753 99 ntBASIC1.76□□□□□ -2.13
SMARCA1P28370 SNORA74.3-201ENST00000517108 154 ntBASIC1.76□□□□□ -2.13
SMARCA1P28370 AP003484.1-201ENST00000530974 250 ntBASIC1.76□□□□□ -2.13
SMARCA1P28370 AL513534.2-201ENST00000603836 250 ntBASIC1.76□□□□□ -2.13
SMARCA1P28370 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.76□□□□□ -2.13
SMARCA1P28370 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.75□□□□□ -2.13
SMARCA1P28370 RNU6-1189P-201ENST00000383958 107 ntBASIC1.75□□□□□ -2.13
SMARCA1P28370 Y_RNA.410-201ENST00000383992 113 ntBASIC1.75□□□□□ -2.13
SMARCA1P28370 Y_RNA.466-201ENST00000384294 113 ntBASIC1.75□□□□□ -2.13
SMARCA1P28370 MIR569-201ENST00000385228 96 ntBASIC1.75□□□□□ -2.13
SMARCA1P28370 RNA5SP272-201ENST00000516095 111 ntBASIC1.75□□□□□ -2.13
SMARCA1P28370 MIR548X2-201ENST00000579776 100 ntBASIC1.75□□□□□ -2.13
SMARCA1P28370 snoU13.31-201ENST00000607291 104 ntBASIC1.75□□□□□ -2.13
SMARCA1P28370 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.75□□□□□ -2.13
SMARCA1P28370 SNORA25.9-201ENST00000365087 128 ntBASIC1.74□□□□□ -2.13
SMARCA1P28370 RNU6-187P-201ENST00000384139 106 ntBASIC1.74□□□□□ -2.13
SMARCA1P28370 SNORA67.6-201ENST00000391093 99 ntBASIC1.74□□□□□ -2.13
SMARCA1P28370 MIR548M-201ENST00000408260 86 ntBASIC1.74□□□□□ -2.13
SMARCA1P28370 RPS26P48-201ENST00000491713 339 ntBASIC1.74□□□□□ -2.13
SMARCA1P28370 RNU6-322P-201ENST00000516010 103 ntBASIC1.74□□□□□ -2.13
SMARCA1P28370 SNORA25.12-201ENST00000516202 82 ntBASIC1.74□□□□□ -2.13
SMARCA1P28370 Y_RNA.703-201ENST00000516846 111 ntBASIC1.74□□□□□ -2.13
SMARCA1P28370 RNU6-902P-201ENST00000517212 91 ntBASIC1.74□□□□□ -2.13
SMARCA1P28370 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC1.74□□□□□ -2.13
SMARCA1P28370 IGHVIII-67-2-201ENST00000519849 88 ntBASIC1.74□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 173.3 ms