Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 MIR570-201ENST00000384917 97 ntBASIC1.12□□□□□ -2.23
NKX3-1Q99801 RNU6-381P-201ENST00000391259 108 ntBASIC1.12□□□□□ -2.23
NKX3-1Q99801 Y_RNA.622-201ENST00000411091 108 ntBASIC1.12□□□□□ -2.23
NKX3-1Q99801 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.12□□□□□ -2.23
NKX3-1Q99801 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.12□□□□□ -2.23
NKX3-1Q99801 AC023449.1-201ENST00000454464 154 ntBASIC1.12□□□□□ -2.23
NKX3-1Q99801 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC1.12□□□□□ -2.23
NKX3-1Q99801 RNU7-41P-201ENST00000515917 61 ntBASIC1.12□□□□□ -2.23
NKX3-1Q99801 RNU7-25P-201ENST00000516544 62 ntBASIC1.12□□□□□ -2.23
NKX3-1Q99801 RNU7-181P-201ENST00000517234 74 ntBASIC1.12□□□□□ -2.23
NKX3-1Q99801 AC007751.1-201ENST00000529260 376 ntBASIC1.12□□□□□ -2.23
NKX3-1Q99801 MIR5688-201ENST00000580619 83 ntBASIC1.12□□□□□ -2.23
NKX3-1Q99801 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.12□□□□□ -2.23
NKX3-1Q99801 Y_RNA.262-201ENST00000364641 102 ntBASIC1.11□□□□□ -2.23
NKX3-1Q99801 RNU6-923P-201ENST00000364753 107 ntBASIC1.11□□□□□ -2.23
NKX3-1Q99801 SNORA20.1-201ENST00000364790 130 ntBASIC1.11□□□□□ -2.23
NKX3-1Q99801 Y_RNA.547-201ENST00000384654 119 ntBASIC1.11□□□□□ -2.23
NKX3-1Q99801 MIR520C-201ENST00000385005 87 ntBASIC1.11□□□□□ -2.23
NKX3-1Q99801 RNU6-493P-201ENST00000391321 108 ntBASIC1.11□□□□□ -2.23
NKX3-1Q99801 AL606845.1-201ENST00000404881 255 ntBASIC1.11□□□□□ -2.23
NKX3-1Q99801 RNU6-321P-201ENST00000410912 106 ntBASIC1.11□□□□□ -2.23
NKX3-1Q99801 Y_RNA.626-201ENST00000411288 95 ntBASIC1.11□□□□□ -2.23
NKX3-1Q99801 RNU6-830P-201ENST00000516353 107 ntBASIC1.11□□□□□ -2.23
NKX3-1Q99801 RNU6-1007P-201ENST00000516586 107 ntBASIC1.11□□□□□ -2.23
NKX3-1Q99801 AC004817.2-201ENST00000561794 651 ntBASIC1.11□□□□□ -2.23
NKX3-1Q99801 MIR6078-201ENST00000611069 100 ntBASIC1.11□□□□□ -2.23
NKX3-1Q99801 MIR8065-201ENST00000620577 100 ntBASIC1.11□□□□□ -2.23
NKX3-1Q99801 AC091895.1-201ENST00000624494 256 ntBASIC1.11□□□□□ -2.23
NKX3-1Q99801 Y_RNA.91-201ENST00000363042 107 ntBASIC1.1□□□□□ -2.23
NKX3-1Q99801 Y_RNA.363-201ENST00000365529 113 ntBASIC1.1□□□□□ -2.23
NKX3-1Q99801 Y_RNA.478-201ENST00000384358 107 ntBASIC1.1□□□□□ -2.23
NKX3-1Q99801 MIR616-201ENST00000385293 97 ntBASIC1.1□□□□□ -2.23
NKX3-1Q99801 RNU6-1228P-201ENST00000391014 107 ntBASIC1.1□□□□□ -2.23
NKX3-1Q99801 U8.17-201ENST00000391292 132 ntBASIC1.1□□□□□ -2.23
NKX3-1Q99801 AL133373.1-201ENST00000497098 94 ntBASIC1.1□□□□□ -2.23
NKX3-1Q99801 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC1.1□□□□□ -2.23
NKX3-1Q99801 RNU4-57P-201ENST00000515980 135 ntBASIC1.1□□□□□ -2.23
NKX3-1Q99801 SNORA31.2-201ENST00000516019 134 ntBASIC1.1□□□□□ -2.23
NKX3-1Q99801 SNORD111.1-201ENST00000516421 86 ntBASIC1.1□□□□□ -2.23
NKX3-1Q99801 MIR4764-201ENST00000580680 88 ntBASIC1.1□□□□□ -2.23
NKX3-1Q99801 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC1.1□□□□□ -2.23
NKX3-1Q99801 AL353770.2-201ENST00000620024 78 ntBASIC1.1□□□□□ -2.23
NKX3-1Q99801 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.09□□□□□ -2.23
NKX3-1Q99801 RNU6-484P-201ENST00000384016 107 ntBASIC1.09□□□□□ -2.23
NKX3-1Q99801 SNORD61-201ENST00000384252 73 ntBASIC1.09□□□□□ -2.23
NKX3-1Q99801 Y_RNA.494-201ENST00000384432 111 ntBASIC1.09□□□□□ -2.23
NKX3-1Q99801 MIR618-201ENST00000385287 98 ntBASIC1.09□□□□□ -2.23
NKX3-1Q99801 MIR548O-201ENST00000408583 114 ntBASIC1.09□□□□□ -2.23
NKX3-1Q99801 RNU6-1054P-201ENST00000411293 104 ntBASIC1.09□□□□□ -2.23
NKX3-1Q99801 COX6CP14-201ENST00000469580 174 ntBASIC1.09□□□□□ -2.23
NKX3-1Q99801 MIR4308-201ENST00000580634 81 ntBASIC1.09□□□□□ -2.23
NKX3-1Q99801 AL357312.1-201ENST00000603879 298 ntBASIC1.09□□□□□ -2.23
NKX3-1Q99801 SNORA25.3-201ENST00000363205 127 ntBASIC1.08□□□□□ -2.24
NKX3-1Q99801 RNY1P10-201ENST00000363268 113 ntBASIC1.08□□□□□ -2.24
NKX3-1Q99801 RNU4-17P-201ENST00000365598 141 ntBASIC1.08□□□□□ -2.24
NKX3-1Q99801 MIR548A2-201ENST00000384956 97 ntBASIC1.08□□□□□ -2.24
NKX3-1Q99801 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.08□□□□□ -2.24
NKX3-1Q99801 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.08□□□□□ -2.24
NKX3-1Q99801 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.08□□□□□ -2.24
NKX3-1Q99801 RN7SKP179-201ENST00000516126 217 ntBASIC1.08□□□□□ -2.24
NKX3-1Q99801 RNU6-1270P-201ENST00000517128 108 ntBASIC1.08□□□□□ -2.24
NKX3-1Q99801 AC019288.1-201ENST00000557918 224 ntBASIC1.08□□□□□ -2.24
NKX3-1Q99801 RNU2-4P-201ENST00000606190 192 ntBASIC1.08□□□□□ -2.24
NKX3-1Q99801 SNORD45.3-201ENST00000363836 72 ntBASIC1.07□□□□□ -2.24
NKX3-1Q99801 Y_RNA.199-201ENST00000364014 102 ntBASIC1.07□□□□□ -2.24
NKX3-1Q99801 Y_RNA.634-201ENST00000364811 113 ntBASIC1.07□□□□□ -2.24
NKX3-1Q99801 SNORA70.7-201ENST00000384159 133 ntBASIC1.07□□□□□ -2.24
NKX3-1Q99801 MIR518F-201ENST00000384973 87 ntBASIC1.07□□□□□ -2.24
NKX3-1Q99801 RNU6-938P-201ENST00000411285 103 ntBASIC1.07□□□□□ -2.24
NKX3-1Q99801 AC245047.7-201ENST00000440265 293 ntBASIC1.07□□□□□ -2.24
NKX3-1Q99801 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.07□□□□□ -2.24
NKX3-1Q99801 RNU6-693P-201ENST00000516134 107 ntBASIC1.07□□□□□ -2.24
NKX3-1Q99801 RNU6-1299P-201ENST00000516316 100 ntBASIC1.07□□□□□ -2.24
NKX3-1Q99801 PRELID3BP2-201ENST00000605362 201 ntBASIC1.07□□□□□ -2.24
NKX3-1Q99801 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.07□□□□□ -2.24
NKX3-1Q99801 Y_RNA.66-201ENST00000362862 102 ntBASIC1.06□□□□□ -2.24
NKX3-1Q99801 RNU6-379P-201ENST00000363813 104 ntBASIC1.06□□□□□ -2.24
NKX3-1Q99801 RNY1-201ENST00000364228 113 ntBASIC1.06□□□□□ -2.24
NKX3-1Q99801 Y_RNA.238-201ENST00000364441 102 ntBASIC1.06□□□□□ -2.24
NKX3-1Q99801 RNU6-939P-201ENST00000384634 107 ntBASIC1.06□□□□□ -2.24
NKX3-1Q99801 RNU6-910P-201ENST00000390844 107 ntBASIC1.06□□□□□ -2.24
NKX3-1Q99801 RPL39P39-201ENST00000455840 151 ntBASIC1.06□□□□□ -2.24
NKX3-1Q99801 RPS26P48-201ENST00000491713 339 ntBASIC1.06□□□□□ -2.24
NKX3-1Q99801 RNU4-71P-201ENST00000516258 113 ntBASIC1.06□□□□□ -2.24
NKX3-1Q99801 RNU6-1271P-201ENST00000517049 105 ntBASIC1.06□□□□□ -2.24
NKX3-1Q99801 AL391903.3-201ENST00000612158 163 ntBASIC1.06□□□□□ -2.24
NKX3-1Q99801 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.06□□□□□ -2.24
NKX3-1Q99801 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.06□□□□□ -2.24
NKX3-1Q99801 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.06□□□□□ -2.24
NKX3-1Q99801 Y_RNA.188-201ENST00000363952 111 ntBASIC1.05□□□□□ -2.24
NKX3-1Q99801 Y_RNA.432-201ENST00000384087 111 ntBASIC1.05□□□□□ -2.24
NKX3-1Q99801 MIR15B-201ENST00000385045 98 ntBASIC1.05□□□□□ -2.24
NKX3-1Q99801 RNU7-43P-201ENST00000516554 64 ntBASIC1.05□□□□□ -2.24
NKX3-1Q99801 RNU6-365P-201ENST00000517113 106 ntBASIC1.05□□□□□ -2.24
NKX3-1Q99801 MIR4662B-201ENST00000579498 81 ntBASIC1.05□□□□□ -2.24
NKX3-1Q99801 AL022345.2-201ENST00000606307 135 ntBASIC1.05□□□□□ -2.24
NKX3-1Q99801 AC078938.1-201ENST00000620993 318 ntBASIC1.05□□□□□ -2.24
NKX3-1Q99801 AC008133.2-201ENST00000624540 351 ntBASIC1.05□□□□□ -2.24
NKX3-1Q99801 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC1.04□□□□□ -2.24
NKX3-1Q99801 Y_RNA.23-201ENST00000362496 106 ntBASIC1.04□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 167.1 ms