Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 AC090142.3-201ENST00000519012 385 ntBASIC1.41□□□□□ -2.18
SHMT1P34896 AL357312.1-201ENST00000603879 298 ntBASIC1.41□□□□□ -2.18
SHMT1P34896 AP000942.4-201ENST00000604811 241 ntBASIC1.41□□□□□ -2.18
SHMT1P34896 GHRLOS.1-201ENST00000610995 70 ntBASIC1.41□□□□□ -2.18
SHMT1P34896 AL391903.3-201ENST00000612158 163 ntBASIC1.41□□□□□ -2.18
SHMT1P34896 AC006441.5-201ENST00000612680 209 ntBASIC1.41□□□□□ -2.18
SHMT1P34896 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.41□□□□□ -2.18
SHMT1P34896 RNU6-268P-201ENST00000364174 107 ntBASIC1.4□□□□□ -2.19
SHMT1P34896 RNU6-1228P-201ENST00000391014 107 ntBASIC1.4□□□□□ -2.19
SHMT1P34896 RNU6-381P-201ENST00000391259 108 ntBASIC1.4□□□□□ -2.19
SHMT1P34896 Y_RNA.626-201ENST00000411288 95 ntBASIC1.4□□□□□ -2.19
SHMT1P34896 SNRPGP14-201ENST00000435400 219 ntBASIC1.4□□□□□ -2.19
SHMT1P34896 AC245047.8-201ENST00000456455 284 ntBASIC1.4□□□□□ -2.19
SHMT1P34896 AL512310.8-201ENST00000550183 120 ntBASIC1.4□□□□□ -2.19
SHMT1P34896 MIR3664-201ENST00000579074 99 ntBASIC1.4□□□□□ -2.19
SHMT1P34896 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.19
SHMT1P34896 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC1.39□□□□□ -2.19
SHMT1P34896 RNU6-103P-201ENST00000363686 107 ntBASIC1.39□□□□□ -2.19
SHMT1P34896 snoU2_19.4-201ENST00000364329 80 ntBASIC1.39□□□□□ -2.19
SHMT1P34896 Y_RNA.476-201ENST00000384347 108 ntBASIC1.39□□□□□ -2.19
SHMT1P34896 MIR150-201ENST00000385048 84 ntBASIC1.39□□□□□ -2.19
SHMT1P34896 MIR516B2-201ENST00000385190 85 ntBASIC1.39□□□□□ -2.19
SHMT1P34896 AC090821.2-201ENST00000523552 176 ntBASIC1.39□□□□□ -2.19
SHMT1P34896 MIR7974-201ENST00000615835 79 ntBASIC1.39□□□□□ -2.19
SHMT1P34896 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
SHMT1P34896 Y_RNA.199-201ENST00000364014 102 ntBASIC1.38□□□□□ -2.19
SHMT1P34896 Y_RNA.308-201ENST00000365043 101 ntBASIC1.38□□□□□ -2.19
SHMT1P34896 SNORD41-201ENST00000386967 70 ntBASIC1.38□□□□□ -2.19
SHMT1P34896 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.38□□□□□ -2.19
SHMT1P34896 SNORA26-201ENST00000391286 122 ntBASIC1.38□□□□□ -2.19
SHMT1P34896 RNU6-830P-201ENST00000516353 107 ntBASIC1.38□□□□□ -2.19
SHMT1P34896 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.38□□□□□ -2.19
SHMT1P34896 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
SHMT1P34896 AL442644.1-201ENST00000454390 3105 ntBASIC1.37□□□□□ -2.19
SHMT1P34896 Y_RNA.200-201ENST00000364018 102 ntBASIC1.37□□□□□ -2.19
SHMT1P34896 SNORD114-22-201ENST00000365423 72 ntBASIC1.37□□□□□ -2.19
SHMT1P34896 MT-TT-201ENST00000387460 66 ntBASIC1.37□□□□□ -2.19
SHMT1P34896 AL606845.1-201ENST00000404881 255 ntBASIC1.37□□□□□ -2.19
SHMT1P34896 SCARNA8-201ENST00000515924 131 ntBASIC1.37□□□□□ -2.19
SHMT1P34896 RNU6-1299P-201ENST00000516316 100 ntBASIC1.37□□□□□ -2.19
SHMT1P34896 RNU6-453P-201ENST00000516819 85 ntBASIC1.37□□□□□ -2.19
SHMT1P34896 SNORA74.3-201ENST00000517108 154 ntBASIC1.37□□□□□ -2.19
SHMT1P34896 AC009779.6-201ENST00000603972 165 ntBASIC1.37□□□□□ -2.19
SHMT1P34896 AP001485.1-201ENST00000604799 199 ntBASIC1.37□□□□□ -2.19
SHMT1P34896 AC141273.2-201ENST00000618989 130 ntBASIC1.37□□□□□ -2.19
SHMT1P34896 MIR6767-201ENST00000637302 66 ntBASIC1.37□□□□□ -2.19
SHMT1P34896 RNU6-379P-201ENST00000363813 104 ntBASIC1.36□□□□□ -2.19
SHMT1P34896 Y_RNA.515-201ENST00000384535 112 ntBASIC1.36□□□□□ -2.19
SHMT1P34896 Y_RNA.552-201ENST00000384665 112 ntBASIC1.36□□□□□ -2.19
SHMT1P34896 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.36□□□□□ -2.19
SHMT1P34896 RNY3P16-201ENST00000516338 101 ntBASIC1.36□□□□□ -2.19
SHMT1P34896 RNU6-365P-201ENST00000517113 106 ntBASIC1.36□□□□□ -2.19
SHMT1P34896 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.36□□□□□ -2.19
SHMT1P34896 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.35□□□□□ -2.19
SHMT1P34896 Y_RNA.7-201ENST00000362352 102 ntBASIC1.35□□□□□ -2.19
SHMT1P34896 Y_RNA.83-201ENST00000363005 113 ntBASIC1.35□□□□□ -2.19
SHMT1P34896 Y_RNA.121-201ENST00000363309 113 ntBASIC1.35□□□□□ -2.19
SHMT1P34896 SNORD114-27-201ENST00000363766 70 ntBASIC1.35□□□□□ -2.19
SHMT1P34896 RNU1-93P-201ENST00000364704 169 ntBASIC1.35□□□□□ -2.19
SHMT1P34896 Y_RNA.486-201ENST00000384398 107 ntBASIC1.35□□□□□ -2.19
SHMT1P34896 RNU6-493P-201ENST00000391321 108 ntBASIC1.35□□□□□ -2.19
SHMT1P34896 RPL39P39-201ENST00000455840 151 ntBASIC1.35□□□□□ -2.19
SHMT1P34896 RNA5SP153-201ENST00000516498 76 ntBASIC1.35□□□□□ -2.19
SHMT1P34896 RN7SKP88-201ENST00000516847 250 ntBASIC1.35□□□□□ -2.19
SHMT1P34896 SNORA18.7-201ENST00000516910 131 ntBASIC1.35□□□□□ -2.19
SHMT1P34896 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
SHMT1P34896 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.35□□□□□ -2.19
SHMT1P34896 MIR4744-201ENST00000581563 82 ntBASIC1.35□□□□□ -2.19
SHMT1P34896 7SK.8-201ENST00000612110 250 ntBASIC1.35□□□□□ -2.19
SHMT1P34896 7SK.11-201ENST00000615477 250 ntBASIC1.35□□□□□ -2.19
SHMT1P34896 7SK.13-201ENST00000622040 250 ntBASIC1.35□□□□□ -2.19
SHMT1P34896 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
SHMT1P34896 RNU6-728P-201ENST00000365375 104 ntBASIC1.34□□□□□ -2.19
SHMT1P34896 Y_RNA.432-201ENST00000384087 111 ntBASIC1.34□□□□□ -2.19
SHMT1P34896 RNU2-70P-201ENST00000410718 179 ntBASIC1.34□□□□□ -2.19
SHMT1P34896 SNRPGP8-201ENST00000454064 226 ntBASIC1.34□□□□□ -2.19
SHMT1P34896 SNORD123-201ENST00000459473 70 ntBASIC1.34□□□□□ -2.19
SHMT1P34896 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC1.34□□□□□ -2.19
SHMT1P34896 CYP3A52P-201ENST00000563326 91 ntBASIC1.34□□□□□ -2.19
SHMT1P34896 Z83818.1-201ENST00000603584 150 ntBASIC1.34□□□□□ -2.19
SHMT1P34896 AC015726.2-201ENST00000620112 122 ntBASIC1.34□□□□□ -2.19
SHMT1P34896 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC1.34□□□□□ -2.2
SHMT1P34896 Y_RNA.191-201ENST00000363972 113 ntBASIC1.33□□□□□ -2.2
SHMT1P34896 Y_RNA.224-201ENST00000364308 111 ntBASIC1.33□□□□□ -2.2
SHMT1P34896 RNU6-923P-201ENST00000364753 107 ntBASIC1.33□□□□□ -2.2
SHMT1P34896 MIR548O-201ENST00000408583 114 ntBASIC1.33□□□□□ -2.2
SHMT1P34896 Y_RNA.622-201ENST00000411091 108 ntBASIC1.33□□□□□ -2.2
SHMT1P34896 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC1.33□□□□□ -2.2
SHMT1P34896 Y_RNA.666-201ENST00000516187 112 ntBASIC1.33□□□□□ -2.2
SHMT1P34896 RNU6-947P-201ENST00000516264 106 ntBASIC1.33□□□□□ -2.2
SHMT1P34896 RNU7-43P-201ENST00000516554 64 ntBASIC1.33□□□□□ -2.2
SHMT1P34896 RNU6-504P-201ENST00000516568 104 ntBASIC1.33□□□□□ -2.2
SHMT1P34896 MIR4452-201ENST00000583004 71 ntBASIC1.33□□□□□ -2.2
SHMT1P34896 MIR8065-201ENST00000620577 100 ntBASIC1.33□□□□□ -2.2
SHMT1P34896 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.33□□□□□ -2.2
SHMT1P34896 MIR411-201ENST00000362239 96 ntBASIC1.32□□□□□ -2.2
SHMT1P34896 Y_RNA.116-201ENST00000363292 103 ntBASIC1.32□□□□□ -2.2
SHMT1P34896 SNORD24-201ENST00000383884 75 ntBASIC1.32□□□□□ -2.2
SHMT1P34896 RNU6-484P-201ENST00000384016 107 ntBASIC1.32□□□□□ -2.2
SHMT1P34896 MIR520C-201ENST00000385005 87 ntBASIC1.32□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 228.9 ms