Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 ACA64.5-201ENST00000516207 127 ntBASIC0.84□□□□□ -2.27
PTPN4P29074 RNU11-2P-201ENST00000516898 142 ntBASIC0.84□□□□□ -2.27
PTPN4P29074 RNU6-570P-201ENST00000517051 105 ntBASIC0.84□□□□□ -2.27
PTPN4P29074 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC0.84□□□□□ -2.27
PTPN4P29074 MIR548AR-201ENST00000582191 57 ntBASIC0.84□□□□□ -2.27
PTPN4P29074 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.84□□□□□ -2.27
PTPN4P29074 snoU18.1-201ENST00000629629 71 ntBASIC0.84□□□□□ -2.27
PTPN4P29074 AC008163.1-202ENST00000636004 2889 ntBASIC0.84□□□□□ -2.28
PTPN4P29074 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.83□□□□□ -2.28
PTPN4P29074 MIR103A2-201ENST00000362154 78 ntBASIC0.83□□□□□ -2.28
PTPN4P29074 MIR367-201ENST00000362299 68 ntBASIC0.83□□□□□ -2.28
PTPN4P29074 Y_RNA.293-201ENST00000364908 93 ntBASIC0.83□□□□□ -2.28
PTPN4P29074 Y_RNA.326-201ENST00000365176 113 ntBASIC0.83□□□□□ -2.28
PTPN4P29074 RNU6-1067P-201ENST00000384752 107 ntBASIC0.83□□□□□ -2.28
PTPN4P29074 RNA5SP496-201ENST00000391240 109 ntBASIC0.83□□□□□ -2.28
PTPN4P29074 MIR1185-1-201ENST00000408598 86 ntBASIC0.83□□□□□ -2.28
PTPN4P29074 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.83□□□□□ -2.28
PTPN4P29074 RNU6-351P-201ENST00000516097 100 ntBASIC0.83□□□□□ -2.28
PTPN4P29074 SCARNA24.2-201ENST00000516968 130 ntBASIC0.83□□□□□ -2.28
PTPN4P29074 DEFB108E-201ENST00000524692 240 ntBASIC0.83□□□□□ -2.28
PTPN4P29074 MIR4698-201ENST00000577795 80 ntBASIC0.83□□□□□ -2.28
PTPN4P29074 AC008133.2-201ENST00000624540 351 ntBASIC0.83□□□□□ -2.28
PTPN4P29074 Y_RNA.14-201ENST00000362415 103 ntBASIC0.82□□□□□ -2.28
PTPN4P29074 Y_RNA.275-201ENST00000364726 110 ntBASIC0.82□□□□□ -2.28
PTPN4P29074 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.82□□□□□ -2.28
PTPN4P29074 U8.17-201ENST00000391292 132 ntBASIC0.82□□□□□ -2.28
PTPN4P29074 SNORD124-201ENST00000459577 104 ntBASIC0.82□□□□□ -2.28
PTPN4P29074 RNU7-149P-201ENST00000516739 59 ntBASIC0.82□□□□□ -2.28
PTPN4P29074 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC0.82□□□□□ -2.28
PTPN4P29074 MIR4724-201ENST00000579485 89 ntBASIC0.82□□□□□ -2.28
PTPN4P29074 AL049861.1-201ENST00000603130 150 ntBASIC0.82□□□□□ -2.28
PTPN4P29074 AP001282.2-201ENST00000616149 309 ntBASIC0.82□□□□□ -2.28
PTPN4P29074 uc_338.4-201ENST00000616635 176 ntBASIC0.82□□□□□ -2.28
PTPN4P29074 AC015726.2-201ENST00000620112 122 ntBASIC0.82□□□□□ -2.28
PTPN4P29074 PVT1_3.1-201ENST00000620853 95 ntBASIC0.82□□□□□ -2.28
PTPN4P29074 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC0.82□□□□□ -2.28
PTPN4P29074 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC0.82□□□□□ -2.28
PTPN4P29074 Y_RNA.512-201ENST00000384518 102 ntBASIC0.81□□□□□ -2.28
PTPN4P29074 RNU6-1160P-201ENST00000384546 104 ntBASIC0.81□□□□□ -2.28
PTPN4P29074 MIR526A2-201ENST00000390198 65 ntBASIC0.81□□□□□ -2.28
PTPN4P29074 AC023449.1-201ENST00000454464 154 ntBASIC0.81□□□□□ -2.28
PTPN4P29074 MTATP8P1-201ENST00000467115 207 ntBASIC0.81□□□□□ -2.28
PTPN4P29074 TRBVB-201ENST00000477100 408 ntBASIC0.81□□□□□ -2.28
PTPN4P29074 PSMC1P5-201ENST00000512850 177 ntBASIC0.81□□□□□ -2.28
PTPN4P29074 RNU4-57P-201ENST00000515980 135 ntBASIC0.81□□□□□ -2.28
PTPN4P29074 Y_RNA.720-201ENST00000517166 92 ntBASIC0.81□□□□□ -2.28
PTPN4P29074 MIR4653-201ENST00000585107 83 ntBASIC0.81□□□□□ -2.28
PTPN4P29074 AC006504.6-201ENST00000590142 199 ntBASIC0.81□□□□□ -2.28
PTPN4P29074 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.8□□□□□ -2.28
PTPN4P29074 RNU4-10P-201ENST00000364383 140 ntBASIC0.8□□□□□ -2.28
PTPN4P29074 Y_RNA.237-201ENST00000364439 102 ntBASIC0.8□□□□□ -2.28
PTPN4P29074 RNU6-1138P-201ENST00000365359 106 ntBASIC0.8□□□□□ -2.28
PTPN4P29074 Y_RNA.376-201ENST00000365638 108 ntBASIC0.8□□□□□ -2.28
PTPN4P29074 RNU6-211P-201ENST00000384047 107 ntBASIC0.8□□□□□ -2.28
PTPN4P29074 RNU6-1289P-201ENST00000384431 106 ntBASIC0.8□□□□□ -2.28
PTPN4P29074 RNU6-342P-201ENST00000384521 104 ntBASIC0.8□□□□□ -2.28
PTPN4P29074 RNU6-713P-201ENST00000384761 107 ntBASIC0.8□□□□□ -2.28
PTPN4P29074 MIR608-201ENST00000384820 100 ntBASIC0.8□□□□□ -2.28
PTPN4P29074 MIR1302-7-201ENST00000408841 72 ntBASIC0.8□□□□□ -2.28
PTPN4P29074 RPS3AP1-201ENST00000413190 320 ntBASIC0.8□□□□□ -2.28
PTPN4P29074 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.8□□□□□ -2.28
PTPN4P29074 MTCO2P24-201ENST00000515611 426 ntBASIC0.8□□□□□ -2.28
PTPN4P29074 RNU6-635P-201ENST00000516651 102 ntBASIC0.8□□□□□ -2.28
PTPN4P29074 RNU7-181P-201ENST00000517234 74 ntBASIC0.8□□□□□ -2.28
PTPN4P29074 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC0.8□□□□□ -2.28
PTPN4P29074 FAM71BP1-201ENST00000604431 523 ntBASIC0.8□□□□□ -2.28
PTPN4P29074 AC108706.1-201ENST00000611053 297 ntBASIC0.8□□□□□ -2.28
PTPN4P29074 Y_RNA.802-201ENST00000614892 130 ntBASIC0.8□□□□□ -2.28
PTPN4P29074 SEPT14P17-201ENST00000617978 177 ntBASIC0.8□□□□□ -2.28
PTPN4P29074 MIR4251-201ENST00000635819 61 ntBASIC0.8□□□□□ -2.28
PTPN4P29074 Y_RNA.117-201ENST00000363294 101 ntBASIC0.79□□□□□ -2.28
PTPN4P29074 MIR570-201ENST00000384917 97 ntBASIC0.79□□□□□ -2.28
PTPN4P29074 AC004941.2-201ENST00000427009 228 ntBASIC0.79□□□□□ -2.28
PTPN4P29074 AL392103.1-201ENST00000447000 198 ntBASIC0.79□□□□□ -2.28
PTPN4P29074 SNORD77.4-201ENST00000516158 81 ntBASIC0.79□□□□□ -2.28
PTPN4P29074 RNU7-25P-201ENST00000516544 62 ntBASIC0.79□□□□□ -2.28
PTPN4P29074 RNU6-197P-201ENST00000516680 100 ntBASIC0.79□□□□□ -2.28
PTPN4P29074 RNA5SP480-201ENST00000516840 109 ntBASIC0.79□□□□□ -2.28
PTPN4P29074 MIR5688-201ENST00000580619 83 ntBASIC0.79□□□□□ -2.28
PTPN4P29074 Y_RNA.812-201ENST00000610788 101 ntBASIC0.79□□□□□ -2.28
PTPN4P29074 Y_RNA.784-201ENST00000613803 101 ntBASIC0.79□□□□□ -2.28
PTPN4P29074 Y_RNA.787-201ENST00000616522 101 ntBASIC0.79□□□□□ -2.28
PTPN4P29074 Y_RNA.780-201ENST00000617336 101 ntBASIC0.79□□□□□ -2.28
PTPN4P29074 Y_RNA.801-201ENST00000619005 101 ntBASIC0.79□□□□□ -2.28
PTPN4P29074 Y_RNA.44-201ENST00000362676 108 ntBASIC0.78□□□□□ -2.28
PTPN4P29074 SNORA63-201ENST00000363450 132 ntBASIC0.78□□□□□ -2.28
PTPN4P29074 SNORA63C-201ENST00000364578 129 ntBASIC0.78□□□□□ -2.28
PTPN4P29074 Y_RNA.330-201ENST00000365230 109 ntBASIC0.78□□□□□ -2.28
PTPN4P29074 Y_RNA.547-201ENST00000384654 119 ntBASIC0.78□□□□□ -2.28
PTPN4P29074 MIR606-201ENST00000384851 96 ntBASIC0.78□□□□□ -2.28
PTPN4P29074 MIR548F4-201ENST00000408515 105 ntBASIC0.78□□□□□ -2.28
PTPN4P29074 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.78□□□□□ -2.28
PTPN4P29074 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.78□□□□□ -2.28
PTPN4P29074 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC0.78□□□□□ -2.28
PTPN4P29074 AC025627.3-201ENST00000582078 182 ntBASIC0.78□□□□□ -2.28
PTPN4P29074 AC006006.1-201ENST00000603082 144 ntBASIC0.78□□□□□ -2.28
PTPN4P29074 AL136317.1-201ENST00000612653 226 ntBASIC0.78□□□□□ -2.28
PTPN4P29074 U2.14-201ENST00000615943 113 ntBASIC0.78□□□□□ -2.28
PTPN4P29074 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.78□□□□□ -2.28
PTPN4P29074 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC0.78□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 223.7 ms