Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 RNU6-561P-201ENST00000516222 102 ntBASIC1.33□□□□□ -2.2
MSH3P20585 RNU6-902P-201ENST00000517212 91 ntBASIC1.33□□□□□ -2.2
MSH3P20585 AC090142.3-201ENST00000519012 385 ntBASIC1.33□□□□□ -2.2
MSH3P20585 AC090049.2-201ENST00000550377 109 ntBASIC1.33□□□□□ -2.2
MSH3P20585 Y_RNA.785-201ENST00000384290 109 ntBASIC1.32□□□□□ -2.2
MSH3P20585 RNU4-70P-201ENST00000384579 139 ntBASIC1.32□□□□□ -2.2
MSH3P20585 MIR150-201ENST00000385048 84 ntBASIC1.32□□□□□ -2.2
MSH3P20585 Y_RNA.622-201ENST00000411091 108 ntBASIC1.32□□□□□ -2.2
MSH3P20585 RNU6-1299P-201ENST00000516316 100 ntBASIC1.32□□□□□ -2.2
MSH3P20585 RNU6-830P-201ENST00000516353 107 ntBASIC1.32□□□□□ -2.2
MSH3P20585 RNU6-126P-201ENST00000516685 103 ntBASIC1.32□□□□□ -2.2
MSH3P20585 AC019176.1-201ENST00000518519 225 ntBASIC1.32□□□□□ -2.2
MSH3P20585 AL513534.2-201ENST00000603836 250 ntBASIC1.32□□□□□ -2.2
MSH3P20585 AP001485.1-201ENST00000604799 199 ntBASIC1.32□□□□□ -2.2
MSH3P20585 AL365434.2-201ENST00000607979 234 ntBASIC1.32□□□□□ -2.2
MSH3P20585 AC108706.1-201ENST00000611053 297 ntBASIC1.32□□□□□ -2.2
MSH3P20585 Y_RNA.29-201ENST00000362570 113 ntBASIC1.31□□□□□ -2.2
MSH3P20585 SNORD45.3-201ENST00000363836 72 ntBASIC1.31□□□□□ -2.2
MSH3P20585 Y_RNA.793-201ENST00000411222 111 ntBASIC1.31□□□□□ -2.2
MSH3P20585 RPS27P16-201ENST00000425758 201 ntBASIC1.31□□□□□ -2.2
MSH3P20585 RNU1-123P-201ENST00000458950 160 ntBASIC1.31□□□□□ -2.2
MSH3P20585 Y_RNA.797-201ENST00000515977 94 ntBASIC1.31□□□□□ -2.2
MSH3P20585 RNA5SP153-201ENST00000516498 76 ntBASIC1.31□□□□□ -2.2
MSH3P20585 AC109810.1-201ENST00000534066 224 ntBASIC1.31□□□□□ -2.2
MSH3P20585 FAM106DP-201ENST00000586416 501 ntBASIC1.31□□□□□ -2.2
MSH3P20585 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.31□□□□□ -2.2
MSH3P20585 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
MSH3P20585 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
MSH3P20585 Y_RNA.182-201ENST00000363880 111 ntBASIC1.3□□□□□ -2.2
MSH3P20585 Y_RNA.233-201ENST00000364407 101 ntBASIC1.3□□□□□ -2.2
MSH3P20585 RNU6-728P-201ENST00000365375 104 ntBASIC1.3□□□□□ -2.2
MSH3P20585 Y_RNA.432-201ENST00000384087 111 ntBASIC1.3□□□□□ -2.2
MSH3P20585 SNORD38C-201ENST00000384381 69 ntBASIC1.3□□□□□ -2.2
MSH3P20585 MIR516B2-201ENST00000385190 85 ntBASIC1.3□□□□□ -2.2
MSH3P20585 MIR136-201ENST00000385207 82 ntBASIC1.3□□□□□ -2.2
MSH3P20585 RNU4-43P-201ENST00000410628 137 ntBASIC1.3□□□□□ -2.2
MSH3P20585 SNX2P2-201ENST00000424553 323 ntBASIC1.3□□□□□ -2.2
MSH3P20585 Y_RNA.666-201ENST00000516187 112 ntBASIC1.3□□□□□ -2.2
MSH3P20585 AC022559.1-201ENST00000520905 205 ntBASIC1.3□□□□□ -2.2
MSH3P20585 AC072026.1-201ENST00000605023 201 ntBASIC1.3□□□□□ -2.2
MSH3P20585 AL121890.5-201ENST00000620848 304 ntBASIC1.3□□□□□ -2.2
MSH3P20585 RNA5SP432-201ENST00000362480 116 ntBASIC1.29□□□□□ -2.2
MSH3P20585 Y_RNA.75-201ENST00000362927 97 ntBASIC1.29□□□□□ -2.2
MSH3P20585 Y_RNA.634-201ENST00000364811 113 ntBASIC1.29□□□□□ -2.2
MSH3P20585 RNU6-275P-201ENST00000364910 107 ntBASIC1.29□□□□□ -2.2
MSH3P20585 SNORD24-201ENST00000383884 75 ntBASIC1.29□□□□□ -2.2
MSH3P20585 Y_RNA.412-201ENST00000384001 104 ntBASIC1.29□□□□□ -2.2
MSH3P20585 AL121914.1-201ENST00000450188 156 ntBASIC1.29□□□□□ -2.2
MSH3P20585 RNU6-322P-201ENST00000516010 103 ntBASIC1.29□□□□□ -2.2
MSH3P20585 RNU6-365P-201ENST00000517113 106 ntBASIC1.29□□□□□ -2.2
MSH3P20585 SNORA81.3-201ENST00000517283 198 ntBASIC1.29□□□□□ -2.2
MSH3P20585 MRPS18CP4-201ENST00000535821 231 ntBASIC1.29□□□□□ -2.2
MSH3P20585 AC097639.2-201ENST00000603159 172 ntBASIC1.29□□□□□ -2.2
MSH3P20585 AL157834.3-201ENST00000615543 103 ntBASIC1.29□□□□□ -2.2
MSH3P20585 U6.106-201ENST00000636360 105 ntBASIC1.29□□□□□ -2.2
MSH3P20585 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.28□□□□□ -2.2
MSH3P20585 Y_RNA.66-201ENST00000362862 102 ntBASIC1.28□□□□□ -2.2
MSH3P20585 Y_RNA.91-201ENST00000363042 107 ntBASIC1.28□□□□□ -2.2
MSH3P20585 SNORD26-201ENST00000384147 75 ntBASIC1.28□□□□□ -2.2
MSH3P20585 RNU6-1065P-201ENST00000384513 106 ntBASIC1.28□□□□□ -2.2
MSH3P20585 MIR15B-201ENST00000385045 98 ntBASIC1.28□□□□□ -2.2
MSH3P20585 SNORD41-201ENST00000386967 70 ntBASIC1.28□□□□□ -2.2
MSH3P20585 SNORA26-201ENST00000391286 122 ntBASIC1.28□□□□□ -2.2
MSH3P20585 RNU2-70P-201ENST00000410718 179 ntBASIC1.28□□□□□ -2.2
MSH3P20585 MTND5P15-201ENST00000434246 349 ntBASIC1.28□□□□□ -2.2
MSH3P20585 RNU7-120P-201ENST00000459334 63 ntBASIC1.28□□□□□ -2.2
MSH3P20585 RNU6-1219P-201ENST00000516143 112 ntBASIC1.28□□□□□ -2.2
MSH3P20585 RNU6-197P-201ENST00000516680 100 ntBASIC1.28□□□□□ -2.2
MSH3P20585 AP002392.1-201ENST00000537692 208 ntBASIC1.28□□□□□ -2.2
MSH3P20585 MIR3937-201ENST00000580135 106 ntBASIC1.28□□□□□ -2.2
MSH3P20585 AC004792.1-201ENST00000614523 137 ntBASIC1.28□□□□□ -2.2
MSH3P20585 SNORD61-201ENST00000384252 73 ntBASIC1.27□□□□□ -2.21
MSH3P20585 Y_RNA.547-201ENST00000384654 119 ntBASIC1.27□□□□□ -2.21
MSH3P20585 AL451046.2-201ENST00000403074 277 ntBASIC1.27□□□□□ -2.21
MSH3P20585 AC004223.1-201ENST00000479840 271 ntBASIC1.27□□□□□ -2.21
MSH3P20585 RNU7-25P-201ENST00000516544 62 ntBASIC1.27□□□□□ -2.21
MSH3P20585 RNU6-504P-201ENST00000516568 104 ntBASIC1.27□□□□□ -2.21
MSH3P20585 RNU6-922P-201ENST00000516753 99 ntBASIC1.27□□□□□ -2.21
MSH3P20585 SNORA74.3-201ENST00000517108 154 ntBASIC1.27□□□□□ -2.21
MSH3P20585 AC007751.1-201ENST00000529260 376 ntBASIC1.27□□□□□ -2.21
MSH3P20585 AC068338.1-201ENST00000565567 176 ntBASIC1.27□□□□□ -2.21
MSH3P20585 AL353770.2-201ENST00000620024 78 ntBASIC1.27□□□□□ -2.21
MSH3P20585 RNU6-888P-201ENST00000363010 101 ntBASIC1.26□□□□□ -2.21
MSH3P20585 MIR548A2-201ENST00000384956 97 ntBASIC1.26□□□□□ -2.21
MSH3P20585 SNORA40.6-201ENST00000391153 128 ntBASIC1.26□□□□□ -2.21
MSH3P20585 MIR548O-201ENST00000408583 114 ntBASIC1.26□□□□□ -2.21
MSH3P20585 RPS29P29-201ENST00000456396 171 ntBASIC1.26□□□□□ -2.21
MSH3P20585 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.26□□□□□ -2.21
MSH3P20585 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.26□□□□□ -2.21
MSH3P20585 RNU6-693P-201ENST00000516134 107 ntBASIC1.26□□□□□ -2.21
MSH3P20585 MIR3664-201ENST00000579074 99 ntBASIC1.26□□□□□ -2.21
MSH3P20585 GHRLOS.1-201ENST00000610995 70 ntBASIC1.26□□□□□ -2.21
MSH3P20585 AC015726.2-201ENST00000620112 122 ntBASIC1.26□□□□□ -2.21
MSH3P20585 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.26□□□□□ -2.21
MSH3P20585 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC1.25□□□□□ -2.21
MSH3P20585 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.25□□□□□ -2.21
MSH3P20585 Y_RNA.23-201ENST00000362496 106 ntBASIC1.25□□□□□ -2.21
MSH3P20585 MIR518F-201ENST00000384973 87 ntBASIC1.25□□□□□ -2.21
MSH3P20585 SNORA79-201ENST00000408376 140 ntBASIC1.25□□□□□ -2.21
MSH3P20585 RNU2-64P-201ENST00000411315 191 ntBASIC1.25□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 245.9 ms