Protein–RNA interactions for Protein: Q99569

PKP4, Plakophilin-4, humanhuman

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4Q99569 RNU2-56P-201ENST00000516826 190 ntBASIC1.67□□□□□ -2.14
PKP4Q99569 RNU6-250P-201ENST00000516958 103 ntBASIC1.67□□□□□ -2.14
PKP4Q99569 Y_RNA.714-201ENST00000517065 90 ntBASIC1.67□□□□□ -2.14
PKP4Q99569 MIR3646-201ENST00000578301 84 ntBASIC1.67□□□□□ -2.14
PKP4Q99569 MIR4662B-201ENST00000579498 81 ntBASIC1.67□□□□□ -2.14
PKP4Q99569 MIR378D2-201ENST00000580636 98 ntBASIC1.67□□□□□ -2.14
PKP4Q99569 AC022217.4-201ENST00000604389 163 ntBASIC1.67□□□□□ -2.14
PKP4Q99569 AP001485.1-201ENST00000604799 199 ntBASIC1.67□□□□□ -2.14
PKP4Q99569 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC1.67□□□□□ -2.14
PKP4Q99569 MIR126-201ENST00000362291 85 ntBASIC1.66□□□□□ -2.14
PKP4Q99569 RNU4-11P-201ENST00000365287 132 ntBASIC1.66□□□□□ -2.14
PKP4Q99569 MIR520A-201ENST00000384862 85 ntBASIC1.66□□□□□ -2.14
PKP4Q99569 CYCSP49-201ENST00000420810 319 ntBASIC1.66□□□□□ -2.14
PKP4Q99569 AC245047.3-201ENST00000429428 127 ntBASIC1.66□□□□□ -2.14
PKP4Q99569 FTH1P12-201ENST00000432137 551 ntBASIC1.66□□□□□ -2.14
PKP4Q99569 AC069257.2-201ENST00000441819 155 ntBASIC1.66□□□□□ -2.14
PKP4Q99569 NDUFA4P2-201ENST00000489989 244 ntBASIC1.66□□□□□ -2.14
PKP4Q99569 AC084364.2-201ENST00000546924 395 ntBASIC1.66□□□□□ -2.14
PKP4Q99569 Pinc.1-201ENST00000616452 154 ntBASIC1.66□□□□□ -2.14
PKP4Q99569 AL591926.4-201ENST00000616895 298 ntBASIC1.66□□□□□ -2.14
PKP4Q99569 AL353997.5-201ENST00000618886 171 ntBASIC1.66□□□□□ -2.14
PKP4Q99569 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.66□□□□□ -2.14
PKP4Q99569 MIR3658-201ENST00000636291 56 ntBASIC1.66□□□□□ -2.14
PKP4Q99569 AC132825.6-201ENST00000638861 357 ntBASIC1.66□□□□□ -2.14
PKP4Q99569 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.66□□□□□ -2.14
PKP4Q99569 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.66□□□□□ -2.14
PKP4Q99569 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.65□□□□□ -2.14
PKP4Q99569 RNU6-199P-201ENST00000362954 107 ntBASIC1.65□□□□□ -2.15
PKP4Q99569 RNU6-818P-201ENST00000364837 108 ntBASIC1.65□□□□□ -2.15
PKP4Q99569 Y_RNA.393-201ENST00000383936 102 ntBASIC1.65□□□□□ -2.15
PKP4Q99569 RNU6-768P-201ENST00000384683 107 ntBASIC1.65□□□□□ -2.15
PKP4Q99569 MIR764-201ENST00000390811 85 ntBASIC1.65□□□□□ -2.15
PKP4Q99569 RNU6-360P-201ENST00000390944 104 ntBASIC1.65□□□□□ -2.15
PKP4Q99569 SNORD37.2-201ENST00000391075 66 ntBASIC1.65□□□□□ -2.15
PKP4Q99569 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.65□□□□□ -2.15
PKP4Q99569 RNU2-70P-201ENST00000410718 179 ntBASIC1.65□□□□□ -2.15
PKP4Q99569 AL606517.2-201ENST00000442855 241 ntBASIC1.65□□□□□ -2.15
PKP4Q99569 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.65□□□□□ -2.15
PKP4Q99569 RNU7-28P-201ENST00000516759 62 ntBASIC1.65□□□□□ -2.15
PKP4Q99569 MIR548X2-201ENST00000579776 100 ntBASIC1.65□□□□□ -2.15
PKP4Q99569 MIR4422-201ENST00000581938 83 ntBASIC1.65□□□□□ -2.15
PKP4Q99569 AC087685.1-201ENST00000587507 141 ntBASIC1.65□□□□□ -2.15
PKP4Q99569 AC097639.2-201ENST00000603159 172 ntBASIC1.65□□□□□ -2.15
PKP4Q99569 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.65□□□□□ -2.15
PKP4Q99569 MIR6844-201ENST00000637122 62 ntBASIC1.65□□□□□ -2.15
PKP4Q99569 AL157777.2-201ENST00000258070 137 ntBASIC1.64□□□□□ -2.15
PKP4Q99569 RNU6-414P-201ENST00000363705 104 ntBASIC1.64□□□□□ -2.15
PKP4Q99569 Y_RNA.242-201ENST00000364473 110 ntBASIC1.64□□□□□ -2.15
PKP4Q99569 Y_RNA.634-201ENST00000364811 113 ntBASIC1.64□□□□□ -2.15
PKP4Q99569 RNU6-597P-201ENST00000365620 102 ntBASIC1.64□□□□□ -2.15
PKP4Q99569 RNU6-439P-201ENST00000384188 106 ntBASIC1.64□□□□□ -2.15
PKP4Q99569 Y_RNA.497-201ENST00000384447 98 ntBASIC1.64□□□□□ -2.15
PKP4Q99569 Y_RNA.568-201ENST00000384742 113 ntBASIC1.64□□□□□ -2.15
PKP4Q99569 MIR522-201ENST00000385071 87 ntBASIC1.64□□□□□ -2.15
PKP4Q99569 SNORA12.1-201ENST00000390873 148 ntBASIC1.64□□□□□ -2.15
PKP4Q99569 RNA5SP109-201ENST00000391010 116 ntBASIC1.64□□□□□ -2.15
PKP4Q99569 RNU6-131P-201ENST00000391144 107 ntBASIC1.64□□□□□ -2.15
PKP4Q99569 AL627390.1-201ENST00000396055 340 ntBASIC1.64□□□□□ -2.15
PKP4Q99569 MIR513C-201ENST00000401352 84 ntBASIC1.64□□□□□ -2.15
PKP4Q99569 MLLT10P1-201ENST00000418346 262 ntBASIC1.64□□□□□ -2.15
PKP4Q99569 AC245047.4-201ENST00000433189 144 ntBASIC1.64□□□□□ -2.15
PKP4Q99569 RNU6-970P-201ENST00000516312 107 ntBASIC1.64□□□□□ -2.15
PKP4Q99569 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.64□□□□□ -2.15
PKP4Q99569 AC112693.2-201ENST00000556538 232 ntBASIC1.64□□□□□ -2.15
PKP4Q99569 AC008507.4-201ENST00000585464 127 ntBASIC1.64□□□□□ -2.15
PKP4Q99569 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.64□□□□□ -2.15
PKP4Q99569 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.63□□□□□ -2.15
PKP4Q99569 Y_RNA.91-201ENST00000363042 107 ntBASIC1.63□□□□□ -2.15
PKP4Q99569 Y_RNA.265-201ENST00000364677 108 ntBASIC1.63□□□□□ -2.15
PKP4Q99569 MIR569-201ENST00000385228 96 ntBASIC1.63□□□□□ -2.15
PKP4Q99569 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.63□□□□□ -2.15
PKP4Q99569 RNA5SP482-201ENST00000391269 118 ntBASIC1.63□□□□□ -2.15
PKP4Q99569 RPL30P13-201ENST00000418873 348 ntBASIC1.63□□□□□ -2.15
PKP4Q99569 snoU13.9-201ENST00000458927 103 ntBASIC1.63□□□□□ -2.15
PKP4Q99569 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.63□□□□□ -2.15
PKP4Q99569 RNU6-426P-201ENST00000516464 97 ntBASIC1.63□□□□□ -2.15
PKP4Q99569 RNA5SP481-201ENST00000516814 122 ntBASIC1.63□□□□□ -2.15
PKP4Q99569 MIR8054-201ENST00000620877 86 ntBASIC1.63□□□□□ -2.15
PKP4Q99569 U2.22-201ENST00000636441 106 ntBASIC1.63□□□□□ -2.15
PKP4Q99569 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
PKP4Q99569 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.63□□□□□ -2.15
PKP4Q99569 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
PKP4Q99569 SNORD68-201ENST00000363214 84 ntBASIC1.62□□□□□ -2.15
PKP4Q99569 RNU6-978P-201ENST00000364371 103 ntBASIC1.62□□□□□ -2.15
PKP4Q99569 U8.5-201ENST00000364528 136 ntBASIC1.62□□□□□ -2.15
PKP4Q99569 Y_RNA.486-201ENST00000384398 107 ntBASIC1.62□□□□□ -2.15
PKP4Q99569 SNORA19-201ENST00000384737 128 ntBASIC1.62□□□□□ -2.15
PKP4Q99569 RNU6-440P-201ENST00000390882 105 ntBASIC1.62□□□□□ -2.15
PKP4Q99569 SNORA75.5-201ENST00000391291 81 ntBASIC1.62□□□□□ -2.15
PKP4Q99569 MIR1267-201ENST00000408723 78 ntBASIC1.62□□□□□ -2.15
PKP4Q99569 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.62□□□□□ -2.15
PKP4Q99569 SNORA25.15-201ENST00000516487 89 ntBASIC1.62□□□□□ -2.15
PKP4Q99569 RNU6-365P-201ENST00000517113 106 ntBASIC1.62□□□□□ -2.15
PKP4Q99569 MIR4762-201ENST00000585261 75 ntBASIC1.62□□□□□ -2.15
PKP4Q99569 AC120024.3-201ENST00000603167 156 ntBASIC1.62□□□□□ -2.15
PKP4Q99569 SNORA28-201ENST00000606769 126 ntBASIC1.62□□□□□ -2.15
PKP4Q99569 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
PKP4Q99569 SNORA63D-201ENST00000364359 132 ntBASIC1.61□□□□□ -2.15
PKP4Q99569 SNORA25.7-201ENST00000364375 127 ntBASIC1.61□□□□□ -2.15
PKP4Q99569 RNU6-950P-201ENST00000384651 107 ntBASIC1.61□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 672.5 ms