Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 SNORA38-201ENST00000363946 132 ntBASIC2.28□□□□□ -2.04
KRT40Q6A162 U8.5-201ENST00000364528 136 ntBASIC2.28□□□□□ -2.04
KRT40Q6A162 SNORD116-14-201ENST00000383894 92 ntBASIC2.28□□□□□ -2.04
KRT40Q6A162 SNORD116-17-201ENST00000383929 92 ntBASIC2.28□□□□□ -2.04
KRT40Q6A162 SNORA6-201ENST00000384033 151 ntBASIC2.28□□□□□ -2.04
KRT40Q6A162 SNORD61-201ENST00000384252 73 ntBASIC2.28□□□□□ -2.04
KRT40Q6A162 SNORD116-15-201ENST00000384445 92 ntBASIC2.28□□□□□ -2.04
KRT40Q6A162 SNORD116-19-201ENST00000384729 92 ntBASIC2.28□□□□□ -2.04
KRT40Q6A162 MIR583-201ENST00000384846 75 ntBASIC2.28□□□□□ -2.04
KRT40Q6A162 Y_RNA.584-201ENST00000391090 114 ntBASIC2.28□□□□□ -2.04
KRT40Q6A162 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.28□□□□□ -2.04
KRT40Q6A162 MLLT10P1-201ENST00000418346 262 ntBASIC2.28□□□□□ -2.04
KRT40Q6A162 AC245047.3-201ENST00000429428 127 ntBASIC2.28□□□□□ -2.04
KRT40Q6A162 FTH1P12-201ENST00000432137 551 ntBASIC2.28□□□□□ -2.04
KRT40Q6A162 RPL23AP63-201ENST00000498752 471 ntBASIC2.28□□□□□ -2.04
KRT40Q6A162 Y_RNA.666-201ENST00000516187 112 ntBASIC2.28□□□□□ -2.04
KRT40Q6A162 SNORA31.10-201ENST00000516482 106 ntBASIC2.28□□□□□ -2.04
KRT40Q6A162 RNU6-365P-201ENST00000517113 106 ntBASIC2.28□□□□□ -2.04
KRT40Q6A162 AC090142.3-201ENST00000519012 385 ntBASIC2.28□□□□□ -2.04
KRT40Q6A162 AC084364.2-201ENST00000546924 395 ntBASIC2.28□□□□□ -2.04
KRT40Q6A162 AL365205.2-201ENST00000594586 68 ntBASIC2.28□□□□□ -2.04
KRT40Q6A162 TUG1_4.1-201ENST00000619464 181 ntBASIC2.28□□□□□ -2.04
KRT40Q6A162 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC2.28□□□□□ -2.04
KRT40Q6A162 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.28□□□□□ -2.04
KRT40Q6A162 AC245060.5-201ENST00000610778 3293 ntBASIC2.27□□□□□ -2.05
KRT40Q6A162 MIR378A-201ENST00000362177 66 ntBASIC2.27□□□□□ -2.05
KRT40Q6A162 RNU6-457P-201ENST00000363999 107 ntBASIC2.27□□□□□ -2.05
KRT40Q6A162 SNORD50B-201ENST00000364995 70 ntBASIC2.27□□□□□ -2.05
KRT40Q6A162 Y_RNA.525-201ENST00000384570 113 ntBASIC2.27□□□□□ -2.05
KRT40Q6A162 MIR499A-201ENST00000384903 122 ntBASIC2.27□□□□□ -2.05
KRT40Q6A162 MIR518A2-201ENST00000384966 87 ntBASIC2.27□□□□□ -2.05
KRT40Q6A162 SNRPGP14-201ENST00000435400 219 ntBASIC2.27□□□□□ -2.05
KRT40Q6A162 AC008267.6-201ENST00000441664 139 ntBASIC2.27□□□□□ -2.05
KRT40Q6A162 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC2.27□□□□□ -2.05
KRT40Q6A162 RNU6-1333P-201ENST00000516162 93 ntBASIC2.27□□□□□ -2.05
KRT40Q6A162 MIR5094-201ENST00000578766 85 ntBASIC2.27□□□□□ -2.05
KRT40Q6A162 U7.2-201ENST00000607576 63 ntBASIC2.27□□□□□ -2.05
KRT40Q6A162 AC011603.4-201ENST00000611325 277 ntBASIC2.27□□□□□ -2.05
KRT40Q6A162 MIR6840-201ENST00000611937 71 ntBASIC2.27□□□□□ -2.05
KRT40Q6A162 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.27□□□□□ -2.05
KRT40Q6A162 SNORD68-201ENST00000363214 84 ntBASIC2.26□□□□□ -2.05
KRT40Q6A162 RNA5SP205-201ENST00000364653 136 ntBASIC2.26□□□□□ -2.05
KRT40Q6A162 Y_RNA.280-201ENST00000364765 112 ntBASIC2.26□□□□□ -2.05
KRT40Q6A162 MIR539-201ENST00000365690 78 ntBASIC2.26□□□□□ -2.05
KRT40Q6A162 MIR7-2-201ENST00000384970 110 ntBASIC2.26□□□□□ -2.05
KRT40Q6A162 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC2.26□□□□□ -2.05
KRT40Q6A162 RNU11-3P-201ENST00000391111 133 ntBASIC2.26□□□□□ -2.05
KRT40Q6A162 SNORA26-201ENST00000391286 122 ntBASIC2.26□□□□□ -2.05
KRT40Q6A162 HMGN2P39-201ENST00000398005 273 ntBASIC2.26□□□□□ -2.05
KRT40Q6A162 BTF3P4-201ENST00000418852 495 ntBASIC2.26□□□□□ -2.05
KRT40Q6A162 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC2.26□□□□□ -2.05
KRT40Q6A162 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC2.26□□□□□ -2.05
KRT40Q6A162 RNVU1-2-201ENST00000516326 135 ntBASIC2.26□□□□□ -2.05
KRT40Q6A162 AC131055.1-201ENST00000584626 316 ntBASIC2.26□□□□□ -2.05
KRT40Q6A162 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC2.26□□□□□ -2.05
KRT40Q6A162 MIR337-201ENST00000362281 93 ntBASIC2.25□□□□□ -2.05
KRT40Q6A162 Y_RNA.52-201ENST00000362760 96 ntBASIC2.25□□□□□ -2.05
KRT40Q6A162 RNU6-888P-201ENST00000363010 101 ntBASIC2.25□□□□□ -2.05
KRT40Q6A162 RNU6-80P-201ENST00000384195 107 ntBASIC2.25□□□□□ -2.05
KRT40Q6A162 MIR518F-201ENST00000384973 87 ntBASIC2.25□□□□□ -2.05
KRT40Q6A162 MIR624-201ENST00000385217 97 ntBASIC2.25□□□□□ -2.05
KRT40Q6A162 MIR518E-201ENST00000385252 88 ntBASIC2.25□□□□□ -2.05
KRT40Q6A162 HSPE1P9-201ENST00000440046 311 ntBASIC2.25□□□□□ -2.05
KRT40Q6A162 RNU6-126P-201ENST00000516685 103 ntBASIC2.25□□□□□ -2.05
KRT40Q6A162 RNU6-1270P-201ENST00000517128 108 ntBASIC2.25□□□□□ -2.05
KRT40Q6A162 MIR3129-201ENST00000581095 76 ntBASIC2.25□□□□□ -2.05
KRT40Q6A162 AC087685.1-201ENST00000587507 141 ntBASIC2.25□□□□□ -2.05
KRT40Q6A162 AC069114.2-201ENST00000604699 304 ntBASIC2.25□□□□□ -2.05
KRT40Q6A162 SNORD14A-201ENST00000606526 91 ntBASIC2.25□□□□□ -2.05
KRT40Q6A162 MIR8054-201ENST00000620877 86 ntBASIC2.25□□□□□ -2.05
KRT40Q6A162 MIR376A2-201ENST00000636782 80 ntBASIC2.25□□□□□ -2.05
KRT40Q6A162 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.25□□□□□ -2.05
KRT40Q6A162 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC2.25□□□□□ -2.05
KRT40Q6A162 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
KRT40Q6A162 RNU6-1019P-201ENST00000364424 107 ntBASIC2.24□□□□□ -2.05
KRT40Q6A162 SNORD24-201ENST00000383884 75 ntBASIC2.24□□□□□ -2.05
KRT40Q6A162 RNU6-440P-201ENST00000390882 105 ntBASIC2.24□□□□□ -2.05
KRT40Q6A162 RNU7-107P-201ENST00000459121 61 ntBASIC2.24□□□□□ -2.05
KRT40Q6A162 RNU6-659P-201ENST00000516454 104 ntBASIC2.24□□□□□ -2.05
KRT40Q6A162 RNU6-504P-201ENST00000516568 104 ntBASIC2.24□□□□□ -2.05
KRT40Q6A162 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.24□□□□□ -2.05
KRT40Q6A162 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.24□□□□□ -2.05
KRT40Q6A162 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.23□□□□□ -2.05
KRT40Q6A162 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
KRT40Q6A162 MIRLET7C-201ENST00000362160 84 ntBASIC2.23□□□□□ -2.05
KRT40Q6A162 Y_RNA.116-201ENST00000363292 103 ntBASIC2.23□□□□□ -2.05
KRT40Q6A162 Y_RNA.120-201ENST00000363304 110 ntBASIC2.23□□□□□ -2.05
KRT40Q6A162 SNORA4.2-201ENST00000365313 147 ntBASIC2.23□□□□□ -2.05
KRT40Q6A162 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.23□□□□□ -2.05
KRT40Q6A162 MIR891A-201ENST00000401237 79 ntBASIC2.23□□□□□ -2.05
KRT40Q6A162 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.23□□□□□ -2.05
KRT40Q6A162 RNA5SP127-201ENST00000411051 133 ntBASIC2.23□□□□□ -2.05
KRT40Q6A162 AL158823.1-201ENST00000418441 478 ntBASIC2.23□□□□□ -2.05
KRT40Q6A162 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC2.23□□□□□ -2.05
KRT40Q6A162 MTND5P32-201ENST00000560711 1802 ntBASIC2.22□□□□□ -2.05
KRT40Q6A162 SNORA3A-201ENST00000364113 130 ntBASIC2.22□□□□□ -2.05
KRT40Q6A162 SNORA63D-201ENST00000364359 132 ntBASIC2.22□□□□□ -2.05
KRT40Q6A162 RNA5SP270-201ENST00000411361 118 ntBASIC2.22□□□□□ -2.05
KRT40Q6A162 STAG3L5P-204ENST00000443759 179 ntBASIC2.22□□□□□ -2.05
KRT40Q6A162 RNU4-57P-201ENST00000515980 135 ntBASIC2.22□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 235 ms