Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 SNORD114-23-201ENST00000363536 72 ntBASIC0.37□□□□□ -2.35
CLDN3O15551 SNORD45.3-201ENST00000363836 72 ntBASIC0.37□□□□□ -2.35
CLDN3O15551 RNU4-50P-201ENST00000364361 141 ntBASIC0.37□□□□□ -2.35
CLDN3O15551 Y_RNA.242-201ENST00000364473 110 ntBASIC0.37□□□□□ -2.35
CLDN3O15551 Y_RNA.393-201ENST00000383936 102 ntBASIC0.37□□□□□ -2.35
CLDN3O15551 RNU6-21P-201ENST00000384710 107 ntBASIC0.37□□□□□ -2.35
CLDN3O15551 RNU4-30P-201ENST00000410245 143 ntBASIC0.37□□□□□ -2.35
CLDN3O15551 AC015818.7-201ENST00000428754 109 ntBASIC0.37□□□□□ -2.35
CLDN3O15551 AC087499.7-201ENST00000441958 109 ntBASIC0.37□□□□□ -2.35
CLDN3O15551 RNU7-141P-201ENST00000459304 62 ntBASIC0.37□□□□□ -2.35
CLDN3O15551 SNORA68.3-201ENST00000515906 83 ntBASIC0.37□□□□□ -2.35
CLDN3O15551 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.37□□□□□ -2.35
CLDN3O15551 RPS29P30-201ENST00000600975 111 ntBASIC0.37□□□□□ -2.35
CLDN3O15551 AL162730.1-201ENST00000605734 292 ntBASIC0.37□□□□□ -2.35
CLDN3O15551 AC084781.2-201ENST00000615568 161 ntBASIC0.37□□□□□ -2.35
CLDN3O15551 Y_RNA.187-201ENST00000363918 113 ntBASIC0.36□□□□□ -2.35
CLDN3O15551 RNU6-1048P-201ENST00000364054 107 ntBASIC0.36□□□□□ -2.35
CLDN3O15551 RNU6-937P-201ENST00000384325 106 ntBASIC0.36□□□□□ -2.35
CLDN3O15551 Y_RNA.496-201ENST00000384444 101 ntBASIC0.36□□□□□ -2.35
CLDN3O15551 RNU2-14P-201ENST00000411053 191 ntBASIC0.36□□□□□ -2.35
CLDN3O15551 SNORD11-201ENST00000459124 84 ntBASIC0.36□□□□□ -2.35
CLDN3O15551 AC010655.3-201ENST00000478818 450 ntBASIC0.36□□□□□ -2.35
CLDN3O15551 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC0.36□□□□□ -2.35
CLDN3O15551 RN7SL793P-201ENST00000583259 296 ntBASIC0.36□□□□□ -2.35
CLDN3O15551 AC092447.9-201ENST00000603395 144 ntBASIC0.36□□□□□ -2.35
CLDN3O15551 uc_338.4-201ENST00000616635 176 ntBASIC0.36□□□□□ -2.35
CLDN3O15551 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.35□□□□□ -2.35
CLDN3O15551 Y_RNA.39-201ENST00000362620 98 ntBASIC0.35□□□□□ -2.35
CLDN3O15551 RNU6-801P-201ENST00000364087 105 ntBASIC0.35□□□□□ -2.35
CLDN3O15551 Y_RNA.439-201ENST00000384119 94 ntBASIC0.35□□□□□ -2.35
CLDN3O15551 MIR613-201ENST00000385248 95 ntBASIC0.35□□□□□ -2.35
CLDN3O15551 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC0.35□□□□□ -2.35
CLDN3O15551 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.35□□□□□ -2.35
CLDN3O15551 RNU4-77P-201ENST00000516692 156 ntBASIC0.35□□□□□ -2.35
CLDN3O15551 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC0.35□□□□□ -2.35
CLDN3O15551 MIR3612-201ENST00000579753 87 ntBASIC0.35□□□□□ -2.35
CLDN3O15551 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC0.35□□□□□ -2.35
CLDN3O15551 MIR4264-201ENST00000583520 66 ntBASIC0.35□□□□□ -2.35
CLDN3O15551 AL138825.1-201ENST00000618587 192 ntBASIC0.35□□□□□ -2.35
CLDN3O15551 MIR18A-201ENST00000362310 71 ntBASIC0.34□□□□□ -2.36
CLDN3O15551 Y_RNA.143-201ENST00000363520 106 ntBASIC0.34□□□□□ -2.36
CLDN3O15551 Y_RNA.383-201ENST00000383855 97 ntBASIC0.34□□□□□ -2.36
CLDN3O15551 SNORA72.4-201ENST00000384174 132 ntBASIC0.34□□□□□ -2.36
CLDN3O15551 RNU6-125P-201ENST00000384505 107 ntBASIC0.34□□□□□ -2.36
CLDN3O15551 RNU6ATAC19P-201ENST00000408096 110 ntBASIC0.34□□□□□ -2.36
CLDN3O15551 MTND1P14-201ENST00000427400 950 ntBASIC0.34□□□□□ -2.36
CLDN3O15551 AL160004.2-201ENST00000432935 350 ntBASIC0.34□□□□□ -2.36
CLDN3O15551 RNU7-152P-201ENST00000458982 64 ntBASIC0.34□□□□□ -2.36
CLDN3O15551 U8.20-201ENST00000459445 131 ntBASIC0.34□□□□□ -2.36
CLDN3O15551 AC107297.1-201ENST00000459991 176 ntBASIC0.34□□□□□ -2.36
CLDN3O15551 SNORA40.14-201ENST00000516543 86 ntBASIC0.34□□□□□ -2.36
CLDN3O15551 AC005357.1-201ENST00000588399 301 ntBASIC0.34□□□□□ -2.36
CLDN3O15551 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC0.34□□□□□ -2.36
CLDN3O15551 AC104985.2-201ENST00000620598 500 ntBASIC0.34□□□□□ -2.36
CLDN3O15551 MIR1302-1-201ENST00000637932 143 ntBASIC0.34□□□□□ -2.36
CLDN3O15551 AC099654.14-201ENST00000638599 341 ntBASIC0.34□□□□□ -2.36
CLDN3O15551 RNU6-1115P-201ENST00000362490 106 ntBASIC0.33□□□□□ -2.36
CLDN3O15551 RNU6-1248P-201ENST00000391096 64 ntBASIC0.33□□□□□ -2.36
CLDN3O15551 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.33□□□□□ -2.36
CLDN3O15551 Y_RNA.661-201ENST00000516003 99 ntBASIC0.33□□□□□ -2.36
CLDN3O15551 Y_RNA.713-201ENST00000517013 96 ntBASIC0.33□□□□□ -2.36
CLDN3O15551 AL132765.2-201ENST00000610812 351 ntBASIC0.33□□□□□ -2.36
CLDN3O15551 AL606534.2-204ENST00000635008 178 ntBASIC0.33□□□□□ -2.36
CLDN3O15551 MIRLET7D-201ENST00000362263 87 ntBASIC0.32□□□□□ -2.36
CLDN3O15551 RNU4-80P-201ENST00000363200 141 ntBASIC0.32□□□□□ -2.36
CLDN3O15551 RNU1-115P-201ENST00000365329 160 ntBASIC0.32□□□□□ -2.36
CLDN3O15551 RNU4-45P-201ENST00000365469 141 ntBASIC0.32□□□□□ -2.36
CLDN3O15551 RNY3-201ENST00000365484 102 ntBASIC0.32□□□□□ -2.36
CLDN3O15551 Y_RNA.505-201ENST00000384489 102 ntBASIC0.32□□□□□ -2.36
CLDN3O15551 POLR2KP2-201ENST00000438155 177 ntBASIC0.32□□□□□ -2.36
CLDN3O15551 AC023449.1-201ENST00000454464 154 ntBASIC0.32□□□□□ -2.36
CLDN3O15551 RNA5SP134-201ENST00000516492 96 ntBASIC0.32□□□□□ -2.36
CLDN3O15551 LARP7P1-201ENST00000605576 316 ntBASIC0.32□□□□□ -2.36
CLDN3O15551 SNORD58B-201ENST00000607313 66 ntBASIC0.32□□□□□ -2.36
CLDN3O15551 AC010487.4-201ENST00000637027 61 ntBASIC0.32□□□□□ -2.36
CLDN3O15551 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.32□□□□□ -2.36
CLDN3O15551 Y_RNA.252-201ENST00000364556 101 ntBASIC0.31□□□□□ -2.36
CLDN3O15551 RNY1P4-201ENST00000384595 115 ntBASIC0.31□□□□□ -2.36
CLDN3O15551 Y_RNA.547-201ENST00000384654 119 ntBASIC0.31□□□□□ -2.36
CLDN3O15551 SNORA26.5-201ENST00000391215 123 ntBASIC0.31□□□□□ -2.36
CLDN3O15551 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.31□□□□□ -2.36
CLDN3O15551 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.31□□□□□ -2.36
CLDN3O15551 RNU7-62P-201ENST00000458856 62 ntBASIC0.31□□□□□ -2.36
CLDN3O15551 RNU7-67P-201ENST00000459003 62 ntBASIC0.31□□□□□ -2.36
CLDN3O15551 Y_RNA.632-201ENST00000459189 102 ntBASIC0.31□□□□□ -2.36
CLDN3O15551 snoU13.16-201ENST00000459350 104 ntBASIC0.31□□□□□ -2.36
CLDN3O15551 SEPT14P8-201ENST00000508026 178 ntBASIC0.31□□□□□ -2.36
CLDN3O15551 MIR4804-201ENST00000581683 73 ntBASIC0.31□□□□□ -2.36
CLDN3O15551 MIR4676-201ENST00000583078 72 ntBASIC0.31□□□□□ -2.36
CLDN3O15551 AC134878.1-201ENST00000619901 243 ntBASIC0.31□□□□□ -2.36
CLDN3O15551 AC092634.7-201ENST00000621022 103 ntBASIC0.31□□□□□ -2.36
CLDN3O15551 Y_RNA.80-201ENST00000362996 102 ntBASIC0.3□□□□□ -2.36
CLDN3O15551 Y_RNA.286-201ENST00000364813 102 ntBASIC0.3□□□□□ -2.36
CLDN3O15551 Y_RNA.485-201ENST00000384395 102 ntBASIC0.3□□□□□ -2.36
CLDN3O15551 RNU6-679P-201ENST00000391003 106 ntBASIC0.3□□□□□ -2.36
CLDN3O15551 AC090844.1-201ENST00000422019 156 ntBASIC0.3□□□□□ -2.36
CLDN3O15551 RNU7-25P-201ENST00000516544 62 ntBASIC0.3□□□□□ -2.36
CLDN3O15551 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC0.3□□□□□ -2.36
CLDN3O15551 UBE2V2P2-201ENST00000587677 504 ntBASIC0.3□□□□□ -2.36
CLDN3O15551 SNORD113-5-201ENST00000607261 78 ntBASIC0.3□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 186 ms