Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 RNU6-899P-201ENST00000363947 107 ntBASIC1.46□□□□□ -2.18
LIMA1Q9UHB6 RNY1-201ENST00000364228 113 ntBASIC1.46□□□□□ -2.18
LIMA1Q9UHB6 RNU4-10P-201ENST00000364383 140 ntBASIC1.46□□□□□ -2.18
LIMA1Q9UHB6 SNORA20.1-201ENST00000364790 130 ntBASIC1.46□□□□□ -2.18
LIMA1Q9UHB6 MIR522-201ENST00000385071 87 ntBASIC1.46□□□□□ -2.18
LIMA1Q9UHB6 MIR653-201ENST00000385279 96 ntBASIC1.46□□□□□ -2.18
LIMA1Q9UHB6 SNORA67.5-201ENST00000391036 107 ntBASIC1.46□□□□□ -2.18
LIMA1Q9UHB6 RNU6ATAC23P-201ENST00000408448 123 ntBASIC1.46□□□□□ -2.18
LIMA1Q9UHB6 Y_RNA.590-201ENST00000410140 107 ntBASIC1.46□□□□□ -2.18
LIMA1Q9UHB6 snoU13.23-201ENST00000458863 104 ntBASIC1.46□□□□□ -2.18
LIMA1Q9UHB6 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.46□□□□□ -2.18
LIMA1Q9UHB6 AC114811.1-201ENST00000507207 168 ntBASIC1.46□□□□□ -2.18
LIMA1Q9UHB6 RNU6-917P-201ENST00000516294 104 ntBASIC1.46□□□□□ -2.18
LIMA1Q9UHB6 AC090049.2-201ENST00000550377 109 ntBASIC1.46□□□□□ -2.18
LIMA1Q9UHB6 MIR3664-201ENST00000579074 99 ntBASIC1.46□□□□□ -2.18
LIMA1Q9UHB6 AL513534.2-201ENST00000603836 250 ntBASIC1.46□□□□□ -2.18
LIMA1Q9UHB6 AL442067.1-201ENST00000613261 223 ntBASIC1.46□□□□□ -2.18
LIMA1Q9UHB6 Y_RNA.292-201ENST00000364904 97 ntBASIC1.45□□□□□ -2.18
LIMA1Q9UHB6 RNY4P28-201ENST00000365281 93 ntBASIC1.45□□□□□ -2.18
LIMA1Q9UHB6 Y_RNA.489-201ENST00000384410 101 ntBASIC1.45□□□□□ -2.18
LIMA1Q9UHB6 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.45□□□□□ -2.18
LIMA1Q9UHB6 MIR764-201ENST00000390811 85 ntBASIC1.45□□□□□ -2.18
LIMA1Q9UHB6 SNORA36B-201ENST00000410438 131 ntBASIC1.45□□□□□ -2.18
LIMA1Q9UHB6 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.45□□□□□ -2.18
LIMA1Q9UHB6 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC1.45□□□□□ -2.18
LIMA1Q9UHB6 MLLT10P1-201ENST00000418346 262 ntBASIC1.45□□□□□ -2.18
LIMA1Q9UHB6 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.45□□□□□ -2.18
LIMA1Q9UHB6 Y_RNA.638-201ENST00000459374 113 ntBASIC1.45□□□□□ -2.18
LIMA1Q9UHB6 AC100767.1-201ENST00000528178 123 ntBASIC1.45□□□□□ -2.18
LIMA1Q9UHB6 CYP3A52P-201ENST00000563326 91 ntBASIC1.45□□□□□ -2.18
LIMA1Q9UHB6 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.45□□□□□ -2.18
LIMA1Q9UHB6 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.45□□□□□ -2.18
LIMA1Q9UHB6 RNU1-17P-201ENST00000363022 152 ntBASIC1.44□□□□□ -2.18
LIMA1Q9UHB6 RNU6-653P-201ENST00000363074 106 ntBASIC1.44□□□□□ -2.18
LIMA1Q9UHB6 Y_RNA.203-201ENST00000364106 102 ntBASIC1.44□□□□□ -2.18
LIMA1Q9UHB6 Y_RNA.304-201ENST00000365011 112 ntBASIC1.44□□□□□ -2.18
LIMA1Q9UHB6 SNORA2.2-201ENST00000365473 135 ntBASIC1.44□□□□□ -2.18
LIMA1Q9UHB6 Y_RNA.572-201ENST00000384757 98 ntBASIC1.44□□□□□ -2.18
LIMA1Q9UHB6 SNRPGP10-201ENST00000432323 225 ntBASIC1.44□□□□□ -2.18
LIMA1Q9UHB6 RNU6-322P-201ENST00000516010 103 ntBASIC1.44□□□□□ -2.18
LIMA1Q9UHB6 RN7SKP88-201ENST00000516847 250 ntBASIC1.44□□□□□ -2.18
LIMA1Q9UHB6 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC1.44□□□□□ -2.18
LIMA1Q9UHB6 AC015712.3-201ENST00000559380 164 ntBASIC1.44□□□□□ -2.18
LIMA1Q9UHB6 AC009779.6-201ENST00000603972 165 ntBASIC1.44□□□□□ -2.18
LIMA1Q9UHB6 AL161722.3-201ENST00000605789 2983 ntBASIC1.44□□□□□ -2.18
LIMA1Q9UHB6 7SK.8-201ENST00000612110 250 ntBASIC1.44□□□□□ -2.18
LIMA1Q9UHB6 7SK.11-201ENST00000615477 250 ntBASIC1.44□□□□□ -2.18
LIMA1Q9UHB6 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.44□□□□□ -2.18
LIMA1Q9UHB6 7SK.13-201ENST00000622040 250 ntBASIC1.44□□□□□ -2.18
LIMA1Q9UHB6 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
LIMA1Q9UHB6 Y_RNA.476-201ENST00000384347 108 ntBASIC1.43□□□□□ -2.18
LIMA1Q9UHB6 SNORD41-201ENST00000386967 70 ntBASIC1.43□□□□□ -2.18
LIMA1Q9UHB6 RNU6-131P-201ENST00000391144 107 ntBASIC1.43□□□□□ -2.18
LIMA1Q9UHB6 MIR1278-201ENST00000408753 81 ntBASIC1.43□□□□□ -2.18
LIMA1Q9UHB6 RNU6-383P-201ENST00000410864 94 ntBASIC1.43□□□□□ -2.18
LIMA1Q9UHB6 AC015922.2-201ENST00000435593 184 ntBASIC1.43□□□□□ -2.18
LIMA1Q9UHB6 RNU1-123P-201ENST00000458950 160 ntBASIC1.43□□□□□ -2.18
LIMA1Q9UHB6 RNU6-437P-201ENST00000459408 95 ntBASIC1.43□□□□□ -2.18
LIMA1Q9UHB6 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC1.43□□□□□ -2.18
LIMA1Q9UHB6 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC1.43□□□□□ -2.18
LIMA1Q9UHB6 RNU4-71P-201ENST00000516258 113 ntBASIC1.43□□□□□ -2.18
LIMA1Q9UHB6 Y_RNA.679-201ENST00000516416 91 ntBASIC1.43□□□□□ -2.18
LIMA1Q9UHB6 AL365265.1-201ENST00000621045 234 ntBASIC1.43□□□□□ -2.18
LIMA1Q9UHB6 RNU6-1205P-201ENST00000363625 106 ntBASIC1.42□□□□□ -2.18
LIMA1Q9UHB6 RNU6-674P-201ENST00000363831 107 ntBASIC1.42□□□□□ -2.18
LIMA1Q9UHB6 MIR526A1-201ENST00000384897 85 ntBASIC1.42□□□□□ -2.18
LIMA1Q9UHB6 AL451046.2-201ENST00000403074 277 ntBASIC1.42□□□□□ -2.18
LIMA1Q9UHB6 Y_RNA.626-201ENST00000411288 95 ntBASIC1.42□□□□□ -2.18
LIMA1Q9UHB6 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC1.42□□□□□ -2.18
LIMA1Q9UHB6 RNY3P16-201ENST00000516338 101 ntBASIC1.42□□□□□ -2.18
LIMA1Q9UHB6 Y_RNA.714-201ENST00000517065 90 ntBASIC1.42□□□□□ -2.18
LIMA1Q9UHB6 AL160236.1-201ENST00000556317 195 ntBASIC1.42□□□□□ -2.18
LIMA1Q9UHB6 AC130289.1-201ENST00000577321 73 ntBASIC1.42□□□□□ -2.18
LIMA1Q9UHB6 MIR3671-201ENST00000580455 88 ntBASIC1.42□□□□□ -2.18
LIMA1Q9UHB6 AL021707.8-201ENST00000609428 183 ntBASIC1.42□□□□□ -2.18
LIMA1Q9UHB6 AL353997.5-201ENST00000618886 171 ntBASIC1.42□□□□□ -2.18
LIMA1Q9UHB6 AC141273.2-201ENST00000618989 130 ntBASIC1.42□□□□□ -2.18
LIMA1Q9UHB6 Y_RNA.796-201ENST00000364268 102 ntBASIC1.41□□□□□ -2.18
LIMA1Q9UHB6 Y_RNA.274-201ENST00000364714 101 ntBASIC1.41□□□□□ -2.18
LIMA1Q9UHB6 Y_RNA.799-201ENST00000364992 102 ntBASIC1.41□□□□□ -2.18
LIMA1Q9UHB6 RNU6-969P-201ENST00000383900 105 ntBASIC1.41□□□□□ -2.18
LIMA1Q9UHB6 SNORD26-201ENST00000384147 75 ntBASIC1.41□□□□□ -2.18
LIMA1Q9UHB6 MIR452-201ENST00000385020 85 ntBASIC1.41□□□□□ -2.18
LIMA1Q9UHB6 AC004223.1-201ENST00000479840 271 ntBASIC1.41□□□□□ -2.18
LIMA1Q9UHB6 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.41□□□□□ -2.18
LIMA1Q9UHB6 SNORD45.4-201ENST00000516629 73 ntBASIC1.41□□□□□ -2.18
LIMA1Q9UHB6 RNU6-165P-201ENST00000517170 99 ntBASIC1.41□□□□□ -2.18
LIMA1Q9UHB6 MIR4303-201ENST00000581299 66 ntBASIC1.41□□□□□ -2.18
LIMA1Q9UHB6 MIR4524B-201ENST00000581569 115 ntBASIC1.41□□□□□ -2.18
LIMA1Q9UHB6 GHRLOS.1-201ENST00000610995 70 ntBASIC1.41□□□□□ -2.18
LIMA1Q9UHB6 JPX_2.1-201ENST00000614161 69 ntBASIC1.41□□□□□ -2.18
LIMA1Q9UHB6 RNU6-1084P-201ENST00000362498 107 ntBASIC1.4□□□□□ -2.19
LIMA1Q9UHB6 snoU2_19.4-201ENST00000364329 80 ntBASIC1.4□□□□□ -2.19
LIMA1Q9UHB6 Y_RNA.293-201ENST00000364908 93 ntBASIC1.4□□□□□ -2.19
LIMA1Q9UHB6 snoU2-30.1-201ENST00000365012 70 ntBASIC1.4□□□□□ -2.19
LIMA1Q9UHB6 RNU6-144P-201ENST00000383951 107 ntBASIC1.4□□□□□ -2.19
LIMA1Q9UHB6 MIR150-201ENST00000385048 84 ntBASIC1.4□□□□□ -2.19
LIMA1Q9UHB6 MIR526A2-201ENST00000390198 65 ntBASIC1.4□□□□□ -2.19
LIMA1Q9UHB6 MIR1298-201ENST00000408783 112 ntBASIC1.4□□□□□ -2.19
LIMA1Q9UHB6 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.4□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 271.5 ms