Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC1.1□□□□□ -2.23
LIME1Q9H400 RNU6-322P-201ENST00000516010 103 ntBASIC1.1□□□□□ -2.23
LIME1Q9H400 RNU6-922P-201ENST00000516753 99 ntBASIC1.1□□□□□ -2.23
LIME1Q9H400 RNU6-1223P-201ENST00000517124 104 ntBASIC1.1□□□□□ -2.23
LIME1Q9H400 Y_RNA.720-201ENST00000517166 92 ntBASIC1.1□□□□□ -2.23
LIME1Q9H400 GHRLOS.1-201ENST00000610995 70 ntBASIC1.1□□□□□ -2.23
LIME1Q9H400 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.1□□□□□ -2.23
LIME1Q9H400 SNORA25.1-201ENST00000362326 128 ntBASIC1.09□□□□□ -2.23
LIME1Q9H400 Y_RNA.16-201ENST00000362421 102 ntBASIC1.09□□□□□ -2.23
LIME1Q9H400 RNU6-163P-201ENST00000384396 106 ntBASIC1.09□□□□□ -2.23
LIME1Q9H400 RNU6-342P-201ENST00000384521 104 ntBASIC1.09□□□□□ -2.23
LIME1Q9H400 MIR598-201ENST00000384868 97 ntBASIC1.09□□□□□ -2.23
LIME1Q9H400 AL451046.2-201ENST00000403074 277 ntBASIC1.09□□□□□ -2.23
LIME1Q9H400 MTND5P22-201ENST00000458380 195 ntBASIC1.09□□□□□ -2.23
LIME1Q9H400 Y_RNA.637-201ENST00000459424 114 ntBASIC1.09□□□□□ -2.23
LIME1Q9H400 NDUFA4P2-201ENST00000489989 244 ntBASIC1.09□□□□□ -2.23
LIME1Q9H400 AC090821.2-201ENST00000523552 176 ntBASIC1.09□□□□□ -2.23
LIME1Q9H400 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC1.09□□□□□ -2.23
LIME1Q9H400 AP001282.2-201ENST00000616149 309 ntBASIC1.09□□□□□ -2.23
LIME1Q9H400 MIR6788-201ENST00000618842 66 ntBASIC1.09□□□□□ -2.23
LIME1Q9H400 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.09□□□□□ -2.23
LIME1Q9H400 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.09□□□□□ -2.24
LIME1Q9H400 AC068700.1-201ENST00000565862 3754 ntBASIC1.09□□□□□ -2.24
LIME1Q9H400 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.08□□□□□ -2.24
LIME1Q9H400 Y_RNA.36-201ENST00000362602 112 ntBASIC1.08□□□□□ -2.24
LIME1Q9H400 RNU6-1209P-201ENST00000363655 107 ntBASIC1.08□□□□□ -2.24
LIME1Q9H400 Y_RNA.205-201ENST00000364128 113 ntBASIC1.08□□□□□ -2.24
LIME1Q9H400 snoU2-30.1-201ENST00000365012 70 ntBASIC1.08□□□□□ -2.24
LIME1Q9H400 RNU6-738P-201ENST00000384531 106 ntBASIC1.08□□□□□ -2.24
LIME1Q9H400 MIR606-201ENST00000384851 96 ntBASIC1.08□□□□□ -2.24
LIME1Q9H400 RNU6-131P-201ENST00000391144 107 ntBASIC1.08□□□□□ -2.24
LIME1Q9H400 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.08□□□□□ -2.24
LIME1Q9H400 AC015922.2-201ENST00000435593 184 ntBASIC1.08□□□□□ -2.24
LIME1Q9H400 DYNLT3P2-201ENST00000442517 295 ntBASIC1.08□□□□□ -2.24
LIME1Q9H400 SNORD11-201ENST00000459124 84 ntBASIC1.08□□□□□ -2.24
LIME1Q9H400 SERF1AP1-201ENST00000514575 187 ntBASIC1.08□□□□□ -2.24
LIME1Q9H400 RNU6-1338P-201ENST00000516328 91 ntBASIC1.08□□□□□ -2.24
LIME1Q9H400 SNORD45.4-201ENST00000516629 73 ntBASIC1.08□□□□□ -2.24
LIME1Q9H400 RN7SKP88-201ENST00000516847 250 ntBASIC1.08□□□□□ -2.24
LIME1Q9H400 MIR151B-201ENST00000584249 96 ntBASIC1.08□□□□□ -2.24
LIME1Q9H400 MIR4719-201ENST00000585233 84 ntBASIC1.08□□□□□ -2.24
LIME1Q9H400 AC037487.3-201ENST00000606668 112 ntBASIC1.08□□□□□ -2.24
LIME1Q9H400 AL021707.8-201ENST00000609428 183 ntBASIC1.08□□□□□ -2.24
LIME1Q9H400 7SK.8-201ENST00000612110 250 ntBASIC1.08□□□□□ -2.24
LIME1Q9H400 7SK.11-201ENST00000615477 250 ntBASIC1.08□□□□□ -2.24
LIME1Q9H400 7SK.13-201ENST00000622040 250 ntBASIC1.08□□□□□ -2.24
LIME1Q9H400 Y_RNA.145-201ENST00000363527 102 ntBASIC1.07□□□□□ -2.24
LIME1Q9H400 SNORD50B-201ENST00000364995 70 ntBASIC1.07□□□□□ -2.24
LIME1Q9H400 MIR1298-201ENST00000408783 112 ntBASIC1.07□□□□□ -2.24
LIME1Q9H400 SNRPGP14-201ENST00000435400 219 ntBASIC1.07□□□□□ -2.24
LIME1Q9H400 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.07□□□□□ -2.24
LIME1Q9H400 SNORA27.4-201ENST00000516650 95 ntBASIC1.07□□□□□ -2.24
LIME1Q9H400 Y_RNA.714-201ENST00000517065 90 ntBASIC1.07□□□□□ -2.24
LIME1Q9H400 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.07□□□□□ -2.24
LIME1Q9H400 MIR2681-201ENST00000581814 105 ntBASIC1.07□□□□□ -2.24
LIME1Q9H400 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.07□□□□□ -2.24
LIME1Q9H400 AC008507.4-201ENST00000585464 127 ntBASIC1.07□□□□□ -2.24
LIME1Q9H400 AL512605.2-201ENST00000592972 256 ntBASIC1.07□□□□□ -2.24
LIME1Q9H400 AL357312.1-201ENST00000603879 298 ntBASIC1.07□□□□□ -2.24
LIME1Q9H400 AC013791.1-201ENST00000616619 62 ntBASIC1.07□□□□□ -2.24
LIME1Q9H400 AC007742.2-201ENST00000618226 398 ntBASIC1.07□□□□□ -2.24
LIME1Q9H400 AC134026.1-201ENST00000623249 2239 ntBASIC1.07□□□□□ -2.24
LIME1Q9H400 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
LIME1Q9H400 RNU6-144P-201ENST00000383951 107 ntBASIC1.06□□□□□ -2.24
LIME1Q9H400 RNU6-514P-201ENST00000384208 107 ntBASIC1.06□□□□□ -2.24
LIME1Q9H400 MIR15B-201ENST00000385045 98 ntBASIC1.06□□□□□ -2.24
LIME1Q9H400 MTCO2P33-201ENST00000402100 465 ntBASIC1.06□□□□□ -2.24
LIME1Q9H400 RNU6-1054P-201ENST00000411293 104 ntBASIC1.06□□□□□ -2.24
LIME1Q9H400 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC1.06□□□□□ -2.24
LIME1Q9H400 AC090142.3-201ENST00000519012 385 ntBASIC1.06□□□□□ -2.24
LIME1Q9H400 AL117187.1-201ENST00000555482 181 ntBASIC1.06□□□□□ -2.24
LIME1Q9H400 AL008718.3-201ENST00000610217 321 ntBASIC1.06□□□□□ -2.24
LIME1Q9H400 JPX_2.1-201ENST00000614161 69 ntBASIC1.06□□□□□ -2.24
LIME1Q9H400 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC1.06□□□□□ -2.24
LIME1Q9H400 Y_RNA.275-201ENST00000364726 110 ntBASIC1.05□□□□□ -2.24
LIME1Q9H400 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.05□□□□□ -2.24
LIME1Q9H400 TRBVB-201ENST00000477100 408 ntBASIC1.05□□□□□ -2.24
LIME1Q9H400 SNORD111.1-201ENST00000516421 86 ntBASIC1.05□□□□□ -2.24
LIME1Q9H400 MIR8062-201ENST00000621515 85 ntBASIC1.05□□□□□ -2.24
LIME1Q9H400 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.04□□□□□ -2.24
LIME1Q9H400 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.04□□□□□ -2.24
LIME1Q9H400 MIR335-201ENST00000362173 94 ntBASIC1.04□□□□□ -2.24
LIME1Q9H400 RNU6-1205P-201ENST00000363625 106 ntBASIC1.04□□□□□ -2.24
LIME1Q9H400 Y_RNA.376-201ENST00000365638 108 ntBASIC1.04□□□□□ -2.24
LIME1Q9H400 RNU6-662P-201ENST00000384253 104 ntBASIC1.04□□□□□ -2.24
LIME1Q9H400 RNU6-472P-201ENST00000384299 107 ntBASIC1.04□□□□□ -2.24
LIME1Q9H400 RNU6-713P-201ENST00000384761 107 ntBASIC1.04□□□□□ -2.24
LIME1Q9H400 Y_RNA.574-201ENST00000384766 95 ntBASIC1.04□□□□□ -2.24
LIME1Q9H400 MIR150-201ENST00000385048 84 ntBASIC1.04□□□□□ -2.24
LIME1Q9H400 MLLT10P1-201ENST00000418346 262 ntBASIC1.04□□□□□ -2.24
LIME1Q9H400 MTATP8P1-201ENST00000467115 207 ntBASIC1.04□□□□□ -2.24
LIME1Q9H400 RNU6-635P-201ENST00000516651 102 ntBASIC1.04□□□□□ -2.24
LIME1Q9H400 RNU6-570P-201ENST00000517051 105 ntBASIC1.04□□□□□ -2.24
LIME1Q9H400 AC008269.2-201ENST00000561915 1105 ntBASIC1.04□□□□□ -2.24
LIME1Q9H400 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.04□□□□□ -2.24
LIME1Q9H400 MIR5692C2-201ENST00000577959 77 ntBASIC1.04□□□□□ -2.24
LIME1Q9H400 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.04□□□□□ -2.24
LIME1Q9H400 U2.14-201ENST00000615943 113 ntBASIC1.04□□□□□ -2.24
LIME1Q9H400 MIR8065-201ENST00000620577 100 ntBASIC1.04□□□□□ -2.24
LIME1Q9H400 RNU6-1084P-201ENST00000362498 107 ntBASIC1.03□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 178.1 ms