Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 RNU2-51P-201ENST00000410708 197 ntBASIC2.35□□□□□ -2.03
KRT40Q6A162 OR9P1P-201ENST00000496431 281 ntBASIC2.35□□□□□ -2.03
KRT40Q6A162 RNU6-479P-201ENST00000516348 105 ntBASIC2.35□□□□□ -2.03
KRT40Q6A162 AC024995.1-201ENST00000523014 93 ntBASIC2.35□□□□□ -2.03
KRT40Q6A162 Y_RNA.783-201ENST00000613546 102 ntBASIC2.35□□□□□ -2.03
KRT40Q6A162 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
KRT40Q6A162 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
KRT40Q6A162 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
KRT40Q6A162 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.34□□□□□ -2.03
KRT40Q6A162 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
KRT40Q6A162 RNU1-58P-201ENST00000362413 163 ntBASIC2.34□□□□□ -2.03
KRT40Q6A162 RNA5SP37-201ENST00000365420 130 ntBASIC2.34□□□□□ -2.03
KRT40Q6A162 RNU1-52P-201ENST00000384190 164 ntBASIC2.34□□□□□ -2.03
KRT40Q6A162 MIR515-2-201ENST00000384883 83 ntBASIC2.34□□□□□ -2.03
KRT40Q6A162 MIR515-1-201ENST00000384884 83 ntBASIC2.34□□□□□ -2.03
KRT40Q6A162 RNU6-1168P-201ENST00000390831 104 ntBASIC2.34□□□□□ -2.03
KRT40Q6A162 RNU2-70P-201ENST00000410718 179 ntBASIC2.34□□□□□ -2.03
KRT40Q6A162 AL358944.1-201ENST00000528537 144 ntBASIC2.34□□□□□ -2.03
KRT40Q6A162 AC007751.1-201ENST00000529260 376 ntBASIC2.34□□□□□ -2.03
KRT40Q6A162 AC121758.2-201ENST00000553271 193 ntBASIC2.34□□□□□ -2.03
KRT40Q6A162 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC2.34□□□□□ -2.03
KRT40Q6A162 AC026271.5-201ENST00000577873 130 ntBASIC2.34□□□□□ -2.03
KRT40Q6A162 AC002984.1-201ENST00000591692 448 ntBASIC2.34□□□□□ -2.03
KRT40Q6A162 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.34□□□□□ -2.04
KRT40Q6A162 MIR1283-2-201ENST00000408621 87 ntBASIC2.33□□□□□ -2.04
KRT40Q6A162 RNU1-40P-201ENST00000516816 164 ntBASIC2.33□□□□□ -2.04
KRT40Q6A162 RNU1-97P-201ENST00000516872 164 ntBASIC2.33□□□□□ -2.04
KRT40Q6A162 RNU6-1234P-201ENST00000516877 103 ntBASIC2.33□□□□□ -2.04
KRT40Q6A162 MIR5089-201ENST00000580047 84 ntBASIC2.33□□□□□ -2.04
KRT40Q6A162 AC008507.4-201ENST00000585464 127 ntBASIC2.33□□□□□ -2.04
KRT40Q6A162 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC2.33□□□□□ -2.04
KRT40Q6A162 AP001340.1-201ENST00000624405 217 ntBASIC2.33□□□□□ -2.04
KRT40Q6A162 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.33□□□□□ -2.04
KRT40Q6A162 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.32□□□□□ -2.04
KRT40Q6A162 Y_RNA.71-201ENST00000362892 104 ntBASIC2.32□□□□□ -2.04
KRT40Q6A162 Y_RNA.261-201ENST00000364631 102 ntBASIC2.32□□□□□ -2.04
KRT40Q6A162 RNU6-1081P-201ENST00000384537 107 ntBASIC2.32□□□□□ -2.04
KRT40Q6A162 MIR597-201ENST00000384968 97 ntBASIC2.32□□□□□ -2.04
KRT40Q6A162 MIR522-201ENST00000385071 87 ntBASIC2.32□□□□□ -2.04
KRT40Q6A162 AC245047.4-201ENST00000433189 144 ntBASIC2.32□□□□□ -2.04
KRT40Q6A162 MIR548AI-201ENST00000579940 88 ntBASIC2.32□□□□□ -2.04
KRT40Q6A162 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC2.32□□□□□ -2.04
KRT40Q6A162 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.32□□□□□ -2.04
KRT40Q6A162 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
KRT40Q6A162 MIR126-201ENST00000362291 85 ntBASIC2.31□□□□□ -2.04
KRT40Q6A162 RNU6-915P-201ENST00000364943 103 ntBASIC2.31□□□□□ -2.04
KRT40Q6A162 RNU6-1154P-201ENST00000391001 104 ntBASIC2.31□□□□□ -2.04
KRT40Q6A162 RNA5SP109-201ENST00000391010 116 ntBASIC2.31□□□□□ -2.04
KRT40Q6A162 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.31□□□□□ -2.04
KRT40Q6A162 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC2.31□□□□□ -2.04
KRT40Q6A162 AL445646.1-201ENST00000431784 216 ntBASIC2.31□□□□□ -2.04
KRT40Q6A162 AC023449.1-201ENST00000454464 154 ntBASIC2.31□□□□□ -2.04
KRT40Q6A162 RNU6-1211P-201ENST00000459179 105 ntBASIC2.31□□□□□ -2.04
KRT40Q6A162 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC2.31□□□□□ -2.04
KRT40Q6A162 RNA5SP137-201ENST00000516833 135 ntBASIC2.31□□□□□ -2.04
KRT40Q6A162 RNU2-60P-201ENST00000517290 128 ntBASIC2.31□□□□□ -2.04
KRT40Q6A162 AP002004.2-201ENST00000531656 154 ntBASIC2.31□□□□□ -2.04
KRT40Q6A162 AC005786.1-201ENST00000588553 154 ntBASIC2.31□□□□□ -2.04
KRT40Q6A162 SNRPGP19-201ENST00000603826 189 ntBASIC2.31□□□□□ -2.04
KRT40Q6A162 snoU13.31-201ENST00000607291 104 ntBASIC2.31□□□□□ -2.04
KRT40Q6A162 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.31□□□□□ -2.04
KRT40Q6A162 MIR203B-201ENST00000636080 86 ntBASIC2.31□□□□□ -2.04
KRT40Q6A162 AC131280.1-202ENST00000624067 4211 ntBASIC2.31□□□□□ -2.04
KRT40Q6A162 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
KRT40Q6A162 AC092881.1-201ENST00000638218 2733 ntBASIC2.3□□□□□ -2.04
KRT40Q6A162 SNORA25.7-201ENST00000364375 127 ntBASIC2.3□□□□□ -2.04
KRT40Q6A162 RNA5SP138-201ENST00000365098 114 ntBASIC2.3□□□□□ -2.04
KRT40Q6A162 MIR548A2-201ENST00000384956 97 ntBASIC2.3□□□□□ -2.04
KRT40Q6A162 MIR29C-201ENST00000385231 88 ntBASIC2.3□□□□□ -2.04
KRT40Q6A162 SNORA40.18-201ENST00000391200 128 ntBASIC2.3□□□□□ -2.04
KRT40Q6A162 RNU11-5P-201ENST00000391216 129 ntBASIC2.3□□□□□ -2.04
KRT40Q6A162 AL049830.1-201ENST00000468034 425 ntBASIC2.3□□□□□ -2.04
KRT40Q6A162 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC2.3□□□□□ -2.04
KRT40Q6A162 RNU6-313P-201ENST00000516317 112 ntBASIC2.3□□□□□ -2.04
KRT40Q6A162 RNU6-62P-201ENST00000516526 102 ntBASIC2.3□□□□□ -2.04
KRT40Q6A162 Y_RNA.686-201ENST00000516548 134 ntBASIC2.3□□□□□ -2.04
KRT40Q6A162 MIR3126-201ENST00000577443 74 ntBASIC2.3□□□□□ -2.04
KRT40Q6A162 MIR4662B-201ENST00000579498 81 ntBASIC2.3□□□□□ -2.04
KRT40Q6A162 AC245884.12-201ENST00000615364 59 ntBASIC2.3□□□□□ -2.04
KRT40Q6A162 MIR8070-201ENST00000616510 88 ntBASIC2.3□□□□□ -2.04
KRT40Q6A162 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
KRT40Q6A162 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
KRT40Q6A162 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC2.29□□□□□ -2.04
KRT40Q6A162 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
KRT40Q6A162 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
KRT40Q6A162 U8.1-201ENST00000362843 134 ntBASIC2.29□□□□□ -2.04
KRT40Q6A162 RNU6-1290P-201ENST00000362957 109 ntBASIC2.29□□□□□ -2.04
KRT40Q6A162 Y_RNA.127-201ENST00000363386 109 ntBASIC2.29□□□□□ -2.04
KRT40Q6A162 Y_RNA.294-201ENST00000364916 102 ntBASIC2.29□□□□□ -2.04
KRT40Q6A162 SNORA1-201ENST00000384107 130 ntBASIC2.29□□□□□ -2.04
KRT40Q6A162 RNU6-735P-201ENST00000410612 107 ntBASIC2.29□□□□□ -2.04
KRT40Q6A162 RNU6-321P-201ENST00000410912 106 ntBASIC2.29□□□□□ -2.04
KRT40Q6A162 RNU7-94P-201ENST00000459576 63 ntBASIC2.29□□□□□ -2.04
KRT40Q6A162 RNU2-56P-201ENST00000516826 190 ntBASIC2.29□□□□□ -2.04
KRT40Q6A162 AP001328.1-201ENST00000528550 176 ntBASIC2.29□□□□□ -2.04
KRT40Q6A162 MIR4762-201ENST00000585261 75 ntBASIC2.29□□□□□ -2.04
KRT40Q6A162 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
KRT40Q6A162 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.28□□□□□ -2.04
KRT40Q6A162 AL596028.1-201ENST00000326971 197 ntBASIC2.28□□□□□ -2.04
KRT40Q6A162 RNU6-508P-201ENST00000363231 103 ntBASIC2.28□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 173.5 ms