Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 RNU6-855P-201ENST00000410395 104 ntBASIC0.57□□□□□ -2.32
MSH6P52701 RPS26P5-201ENST00000418544 335 ntBASIC0.57□□□□□ -2.32
MSH6P52701 MTCO2P27-201ENST00000420740 428 ntBASIC0.57□□□□□ -2.32
MSH6P52701 AC098614.3-201ENST00000438957 440 ntBASIC0.57□□□□□ -2.32
MSH6P52701 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC0.57□□□□□ -2.32
MSH6P52701 AC005042.3-201ENST00000453230 174 ntBASIC0.57□□□□□ -2.32
MSH6P52701 SNORA20.3-201ENST00000516880 132 ntBASIC0.57□□□□□ -2.32
MSH6P52701 MIR548AR-201ENST00000582191 57 ntBASIC0.57□□□□□ -2.32
MSH6P52701 AC104465.1-201ENST00000611365 139 ntBASIC0.57□□□□□ -2.32
MSH6P52701 AC023934.1-201ENST00000574529 2389 ntBASIC0.56□□□□□ -2.32
MSH6P52701 AC134026.1-201ENST00000623249 2239 ntBASIC0.56□□□□□ -2.32
MSH6P52701 Y_RNA.60-201ENST00000362831 98 ntBASIC0.56□□□□□ -2.32
MSH6P52701 SNORD81.1-201ENST00000363064 77 ntBASIC0.56□□□□□ -2.32
MSH6P52701 RNA5SP48-201ENST00000363969 126 ntBASIC0.56□□□□□ -2.32
MSH6P52701 Y_RNA.462-201ENST00000384268 102 ntBASIC0.56□□□□□ -2.32
MSH6P52701 Y_RNA.505-201ENST00000384489 102 ntBASIC0.56□□□□□ -2.32
MSH6P52701 SNORD116-29-201ENST00000384516 83 ntBASIC0.56□□□□□ -2.32
MSH6P52701 Y_RNA.549-201ENST00000384657 102 ntBASIC0.56□□□□□ -2.32
MSH6P52701 SNORD111-201ENST00000408139 94 ntBASIC0.56□□□□□ -2.32
MSH6P52701 COX6CP6-201ENST00000490840 228 ntBASIC0.56□□□□□ -2.32
MSH6P52701 RNU6-277P-201ENST00000516272 106 ntBASIC0.56□□□□□ -2.32
MSH6P52701 RNU6-1110P-201ENST00000516462 101 ntBASIC0.56□□□□□ -2.32
MSH6P52701 AP003357.1-201ENST00000604497 148 ntBASIC0.56□□□□□ -2.32
MSH6P52701 MTND4LP32-201ENST00000636111 270 ntBASIC0.56□□□□□ -2.32
MSH6P52701 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.55□□□□□ -2.32
MSH6P52701 SNORD89-201ENST00000390981 114 ntBASIC0.55□□□□□ -2.32
MSH6P52701 AF228730.4-201ENST00000421457 183 ntBASIC0.55□□□□□ -2.32
MSH6P52701 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.55□□□□□ -2.32
MSH6P52701 AC098869.1-201ENST00000481627 292 ntBASIC0.55□□□□□ -2.32
MSH6P52701 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.55□□□□□ -2.32
MSH6P52701 RNU6-830P-201ENST00000516353 107 ntBASIC0.55□□□□□ -2.32
MSH6P52701 Y_RNA.718-201ENST00000517110 102 ntBASIC0.55□□□□□ -2.32
MSH6P52701 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC0.55□□□□□ -2.32
MSH6P52701 AC096720.1-201ENST00000604441 183 ntBASIC0.55□□□□□ -2.32
MSH6P52701 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC0.55□□□□□ -2.32
MSH6P52701 Y_RNA.142-201ENST00000363491 102 ntBASIC0.54□□□□□ -2.32
MSH6P52701 Y_RNA.148-201ENST00000363557 117 ntBASIC0.54□□□□□ -2.32
MSH6P52701 Y_RNA.203-201ENST00000364106 102 ntBASIC0.54□□□□□ -2.32
MSH6P52701 SNORD113.3-201ENST00000364630 78 ntBASIC0.54□□□□□ -2.32
MSH6P52701 U8.7-201ENST00000364940 136 ntBASIC0.54□□□□□ -2.32
MSH6P52701 RNU6-1040P-201ENST00000383974 107 ntBASIC0.54□□□□□ -2.32
MSH6P52701 Y_RNA.463-201ENST00000384271 102 ntBASIC0.54□□□□□ -2.32
MSH6P52701 SNRPGP14-201ENST00000435400 219 ntBASIC0.54□□□□□ -2.32
MSH6P52701 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC0.54□□□□□ -2.32
MSH6P52701 RNU4-57P-201ENST00000515980 135 ntBASIC0.54□□□□□ -2.32
MSH6P52701 RNU7-115P-201ENST00000516433 55 ntBASIC0.54□□□□□ -2.32
MSH6P52701 AC006600.1-201ENST00000572529 153 ntBASIC0.54□□□□□ -2.32
MSH6P52701 uc_338.17-201ENST00000619633 179 ntBASIC0.54□□□□□ -2.32
MSH6P52701 MIR6516-201ENST00000630554 81 ntBASIC0.54□□□□□ -2.32
MSH6P52701 SNORD14E-201ENST00000364009 85 ntBASIC0.53□□□□□ -2.32
MSH6P52701 Y_RNA.259-201ENST00000364619 101 ntBASIC0.53□□□□□ -2.32
MSH6P52701 SNORD28B-201ENST00000390993 75 ntBASIC0.53□□□□□ -2.32
MSH6P52701 RNY4P36-201ENST00000391116 96 ntBASIC0.53□□□□□ -2.32
MSH6P52701 SNORD99-201ENST00000408612 74 ntBASIC0.53□□□□□ -2.32
MSH6P52701 AC024405.2-202ENST00000532731 184 ntBASIC0.53□□□□□ -2.32
MSH6P52701 AC087685.1-201ENST00000587507 141 ntBASIC0.53□□□□□ -2.32
MSH6P52701 MIR4251-201ENST00000635819 61 ntBASIC0.53□□□□□ -2.32
MSH6P52701 MIR4272-201ENST00000635924 64 ntBASIC0.53□□□□□ -2.32
MSH6P52701 AC099654.14-201ENST00000638599 341 ntBASIC0.53□□□□□ -2.32
MSH6P52701 RNU6-1209P-201ENST00000363655 107 ntBASIC0.52□□□□□ -2.33
MSH6P52701 Y_RNA.187-201ENST00000363918 113 ntBASIC0.52□□□□□ -2.33
MSH6P52701 Y_RNA.331-201ENST00000365267 102 ntBASIC0.52□□□□□ -2.33
MSH6P52701 Y_RNA.428-201ENST00000384078 102 ntBASIC0.52□□□□□ -2.33
MSH6P52701 SNORD38C-201ENST00000384381 69 ntBASIC0.52□□□□□ -2.33
MSH6P52701 AL590004.1-201ENST00000405321 300 ntBASIC0.52□□□□□ -2.33
MSH6P52701 SNORD116.3-201ENST00000517176 78 ntBASIC0.52□□□□□ -2.33
MSH6P52701 AL355375.2-201ENST00000574825 175 ntBASIC0.52□□□□□ -2.33
MSH6P52701 Y_RNA.772-201ENST00000606692 102 ntBASIC0.52□□□□□ -2.33
MSH6P52701 RNU6-94P-201ENST00000607728 107 ntBASIC0.52□□□□□ -2.33
MSH6P52701 RNU6-654P-201ENST00000364373 107 ntBASIC0.51□□□□□ -2.33
MSH6P52701 Y_RNA.384-201ENST00000383909 102 ntBASIC0.51□□□□□ -2.33
MSH6P52701 RNU6-442P-201ENST00000383968 104 ntBASIC0.51□□□□□ -2.33
MSH6P52701 AC024067.1-201ENST00000426199 223 ntBASIC0.51□□□□□ -2.33
MSH6P52701 RBMX2P4-201ENST00000441256 376 ntBASIC0.51□□□□□ -2.33
MSH6P52701 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC0.51□□□□□ -2.33
MSH6P52701 RNU7-152P-201ENST00000458982 64 ntBASIC0.51□□□□□ -2.33
MSH6P52701 NDUFA4P2-201ENST00000489989 244 ntBASIC0.51□□□□□ -2.33
MSH6P52701 AC127455.1-201ENST00000565496 145 ntBASIC0.51□□□□□ -2.33
MSH6P52701 MIR4636-201ENST00000582271 80 ntBASIC0.51□□□□□ -2.33
MSH6P52701 MIR5188-201ENST00000583467 113 ntBASIC0.51□□□□□ -2.33
MSH6P52701 DEFB117-201ENST00000602356 141 ntBASIC0.51□□□□□ -2.33
MSH6P52701 DLEU2_2.2-201ENST00000615474 90 ntBASIC0.51□□□□□ -2.33
MSH6P52701 MIR6718-201ENST00000616153 80 ntBASIC0.51□□□□□ -2.33
MSH6P52701 Pinc.1-201ENST00000616452 154 ntBASIC0.51□□□□□ -2.33
MSH6P52701 7SK.10-201ENST00000621414 298 ntBASIC0.51□□□□□ -2.33
MSH6P52701 RNU6-268P-201ENST00000364174 107 ntBASIC0.5□□□□□ -2.33
MSH6P52701 Y_RNA.303-201ENST00000364998 94 ntBASIC0.5□□□□□ -2.33
MSH6P52701 SNORD63-201ENST00000384262 68 ntBASIC0.5□□□□□ -2.33
MSH6P52701 Y_RNA.496-201ENST00000384444 101 ntBASIC0.5□□□□□ -2.33
MSH6P52701 RNA5SP299-201ENST00000391203 116 ntBASIC0.5□□□□□ -2.33
MSH6P52701 MIR1912-201ENST00000410389 80 ntBASIC0.5□□□□□ -2.33
MSH6P52701 RPL23AP54-201ENST00000495129 419 ntBASIC0.5□□□□□ -2.33
MSH6P52701 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC0.5□□□□□ -2.33
MSH6P52701 AC011373.1-201ENST00000607270 237 ntBASIC0.5□□□□□ -2.33
MSH6P52701 AL136317.1-201ENST00000612653 226 ntBASIC0.5□□□□□ -2.33
MSH6P52701 JPX_2.1-201ENST00000614161 69 ntBASIC0.5□□□□□ -2.33
MSH6P52701 AC084781.2-201ENST00000615568 161 ntBASIC0.5□□□□□ -2.33
MSH6P52701 RNU6-1067P-201ENST00000384752 107 ntBASIC0.49□□□□□ -2.33
MSH6P52701 U8.17-201ENST00000391292 132 ntBASIC0.49□□□□□ -2.33
MSH6P52701 RNU6-613P-201ENST00000410412 108 ntBASIC0.49□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 309.4 ms