Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AC008507.4-201ENST00000585464 127 ntBASIC0.62□□□□□ -2.31
SHMT2P34897 AC005357.1-201ENST00000588399 301 ntBASIC0.62□□□□□ -2.31
SHMT2P34897 RNU6-94P-201ENST00000607728 107 ntBASIC0.62□□□□□ -2.31
SHMT2P34897 RNU4-80P-201ENST00000363200 141 ntBASIC0.61□□□□□ -2.31
SHMT2P34897 RNU6-1048P-201ENST00000364054 107 ntBASIC0.61□□□□□ -2.31
SHMT2P34897 RNU4-50P-201ENST00000364361 141 ntBASIC0.61□□□□□ -2.31
SHMT2P34897 RNU6-654P-201ENST00000364373 107 ntBASIC0.61□□□□□ -2.31
SHMT2P34897 Y_RNA.383-201ENST00000383855 97 ntBASIC0.61□□□□□ -2.31
SHMT2P34897 SNORA72.4-201ENST00000384174 132 ntBASIC0.61□□□□□ -2.31
SHMT2P34897 Y_RNA.471-201ENST00000384312 102 ntBASIC0.61□□□□□ -2.31
SHMT2P34897 Y_RNA.579-201ENST00000390939 94 ntBASIC0.61□□□□□ -2.31
SHMT2P34897 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.61□□□□□ -2.31
SHMT2P34897 RPS26P5-201ENST00000418544 335 ntBASIC0.61□□□□□ -2.31
SHMT2P34897 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC0.61□□□□□ -2.31
SHMT2P34897 RNU6-437P-201ENST00000459408 95 ntBASIC0.61□□□□□ -2.31
SHMT2P34897 RNU6-475P-201ENST00000516073 104 ntBASIC0.61□□□□□ -2.31
SHMT2P34897 RNU6-830P-201ENST00000516353 107 ntBASIC0.61□□□□□ -2.31
SHMT2P34897 AC040926.1-201ENST00000530195 238 ntBASIC0.61□□□□□ -2.31
SHMT2P34897 RMST_2.1-201ENST00000617263 136 ntBASIC0.61□□□□□ -2.31
SHMT2P34897 MIR6516-201ENST00000630554 81 ntBASIC0.61□□□□□ -2.31
SHMT2P34897 AC068700.1-201ENST00000565862 3754 ntBASIC0.61□□□□□ -2.31
SHMT2P34897 RNU6-674P-201ENST00000363831 107 ntBASIC0.6□□□□□ -2.31
SHMT2P34897 RNU6-268P-201ENST00000364174 107 ntBASIC0.6□□□□□ -2.31
SHMT2P34897 Y_RNA.813-201ENST00000364639 102 ntBASIC0.6□□□□□ -2.31
SHMT2P34897 MIR1278-201ENST00000408753 81 ntBASIC0.6□□□□□ -2.31
SHMT2P34897 SNORA36B-201ENST00000410438 131 ntBASIC0.6□□□□□ -2.31
SHMT2P34897 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.6□□□□□ -2.31
SHMT2P34897 POLR2KP2-201ENST00000438155 177 ntBASIC0.6□□□□□ -2.31
SHMT2P34897 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC0.6□□□□□ -2.31
SHMT2P34897 SNORD11-201ENST00000459124 84 ntBASIC0.6□□□□□ -2.31
SHMT2P34897 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC0.6□□□□□ -2.31
SHMT2P34897 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC0.6□□□□□ -2.31
SHMT2P34897 MIR548S-201ENST00000581352 82 ntBASIC0.6□□□□□ -2.31
SHMT2P34897 MIR4801-201ENST00000582704 82 ntBASIC0.6□□□□□ -2.31
SHMT2P34897 AL080274.1-201ENST00000605565 220 ntBASIC0.6□□□□□ -2.31
SHMT2P34897 AC006157.1-201ENST00000611750 366 ntBASIC0.6□□□□□ -2.31
SHMT2P34897 Pinc.1-201ENST00000616452 154 ntBASIC0.6□□□□□ -2.31
SHMT2P34897 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.59□□□□□ -2.31
SHMT2P34897 Y_RNA.112-201ENST00000363250 102 ntBASIC0.59□□□□□ -2.31
SHMT2P34897 Y_RNA.197-201ENST00000364004 102 ntBASIC0.59□□□□□ -2.31
SHMT2P34897 RNU6-801P-201ENST00000364087 105 ntBASIC0.59□□□□□ -2.31
SHMT2P34897 RNY3P14-201ENST00000384309 102 ntBASIC0.59□□□□□ -2.31
SHMT2P34897 MIR802-201ENST00000390235 94 ntBASIC0.59□□□□□ -2.31
SHMT2P34897 SNORD72-201ENST00000390994 80 ntBASIC0.59□□□□□ -2.31
SHMT2P34897 SNORA26.5-201ENST00000391215 123 ntBASIC0.59□□□□□ -2.31
SHMT2P34897 AL603910.2-201ENST00000407268 136 ntBASIC0.59□□□□□ -2.31
SHMT2P34897 RNU6ATAC19P-201ENST00000408096 110 ntBASIC0.59□□□□□ -2.31
SHMT2P34897 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.59□□□□□ -2.31
SHMT2P34897 U7.7-201ENST00000459276 60 ntBASIC0.59□□□□□ -2.31
SHMT2P34897 AC113410.1-201ENST00000505029 247 ntBASIC0.59□□□□□ -2.31
SHMT2P34897 MTND3P22-201ENST00000510932 243 ntBASIC0.59□□□□□ -2.31
SHMT2P34897 Y_RNA.673-201ENST00000516306 88 ntBASIC0.59□□□□□ -2.31
SHMT2P34897 AC004817.2-201ENST00000561794 651 ntBASIC0.59□□□□□ -2.31
SHMT2P34897 RPL23AP91-201ENST00000569211 455 ntBASIC0.59□□□□□ -2.31
SHMT2P34897 SNORD113-5-201ENST00000607261 78 ntBASIC0.59□□□□□ -2.31
SHMT2P34897 AC104465.1-201ENST00000611365 139 ntBASIC0.59□□□□□ -2.31
SHMT2P34897 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC0.59□□□□□ -2.31
SHMT2P34897 AC007485.1-201ENST00000616755 206 ntBASIC0.59□□□□□ -2.31
SHMT2P34897 AC023934.1-201ENST00000574529 2389 ntBASIC0.59□□□□□ -2.32
SHMT2P34897 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.58□□□□□ -2.32
SHMT2P34897 Y_RNA.269-201ENST00000364685 89 ntBASIC0.58□□□□□ -2.32
SHMT2P34897 Y_RNA.370-201ENST00000365589 108 ntBASIC0.58□□□□□ -2.32
SHMT2P34897 Y_RNA.418-201ENST00000384029 102 ntBASIC0.58□□□□□ -2.32
SHMT2P34897 MIR570-201ENST00000384917 97 ntBASIC0.58□□□□□ -2.32
SHMT2P34897 SNORD89-201ENST00000390981 114 ntBASIC0.58□□□□□ -2.32
SHMT2P34897 MTCO2P33-201ENST00000402100 465 ntBASIC0.58□□□□□ -2.32
SHMT2P34897 RNA5SP95-201ENST00000410319 137 ntBASIC0.58□□□□□ -2.32
SHMT2P34897 RNU6-613P-201ENST00000410412 108 ntBASIC0.58□□□□□ -2.32
SHMT2P34897 RNU6-1110P-201ENST00000516462 101 ntBASIC0.58□□□□□ -2.32
SHMT2P34897 MIR2681-201ENST00000581814 105 ntBASIC0.58□□□□□ -2.32
SHMT2P34897 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.58□□□□□ -2.32
SHMT2P34897 RNU4-73P-201ENST00000363164 141 ntBASIC0.57□□□□□ -2.32
SHMT2P34897 Y_RNA.222-201ENST00000364264 102 ntBASIC0.57□□□□□ -2.32
SHMT2P34897 Y_RNA.508-201ENST00000384502 114 ntBASIC0.57□□□□□ -2.32
SHMT2P34897 U8.17-201ENST00000391292 132 ntBASIC0.57□□□□□ -2.32
SHMT2P34897 MIR1302-11-201ENST00000408051 138 ntBASIC0.57□□□□□ -2.32
SHMT2P34897 SNORD111-201ENST00000408139 94 ntBASIC0.57□□□□□ -2.32
SHMT2P34897 MIR1302-9-201ENST00000408365 138 ntBASIC0.57□□□□□ -2.32
SHMT2P34897 SNORD99-201ENST00000408612 74 ntBASIC0.57□□□□□ -2.32
SHMT2P34897 MIR1302-10-201ENST00000408734 138 ntBASIC0.57□□□□□ -2.32
SHMT2P34897 AC098869.1-201ENST00000481627 292 ntBASIC0.57□□□□□ -2.32
SHMT2P34897 COX6CP6-201ENST00000490840 228 ntBASIC0.57□□□□□ -2.32
SHMT2P34897 SEPT14P8-201ENST00000508026 178 ntBASIC0.57□□□□□ -2.32
SHMT2P34897 RNU6-1046P-201ENST00000516538 107 ntBASIC0.57□□□□□ -2.32
SHMT2P34897 MIR4795-201ENST00000584182 89 ntBASIC0.57□□□□□ -2.32
SHMT2P34897 MIR1302-2-201ENST00000607096 138 ntBASIC0.57□□□□□ -2.32
SHMT2P34897 AC006441.5-201ENST00000612680 209 ntBASIC0.57□□□□□ -2.32
SHMT2P34897 AC022709.1-201ENST00000615967 87 ntBASIC0.57□□□□□ -2.32
SHMT2P34897 7SK.10-201ENST00000621414 298 ntBASIC0.57□□□□□ -2.32
SHMT2P34897 uc_338.22-201ENST00000622722 187 ntBASIC0.57□□□□□ -2.32
SHMT2P34897 SNORD113.3-201ENST00000364630 78 ntBASIC0.56□□□□□ -2.32
SHMT2P34897 RNU1-133P-201ENST00000364867 167 ntBASIC0.56□□□□□ -2.32
SHMT2P34897 Y_RNA.355-201ENST00000365462 98 ntBASIC0.56□□□□□ -2.32
SHMT2P34897 Y_RNA.395-201ENST00000383945 109 ntBASIC0.56□□□□□ -2.32
SHMT2P34897 RNU6-102P-201ENST00000384485 104 ntBASIC0.56□□□□□ -2.32
SHMT2P34897 MIR92A1-201ENST00000385233 78 ntBASIC0.56□□□□□ -2.32
SHMT2P34897 RNU6-994P-201ENST00000410507 111 ntBASIC0.56□□□□□ -2.32
SHMT2P34897 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.56□□□□□ -2.32
SHMT2P34897 snoU13.18-201ENST00000459483 104 ntBASIC0.56□□□□□ -2.32
SHMT2P34897 RNU4-57P-201ENST00000515980 135 ntBASIC0.56□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 245.2 ms