Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC1.75□□□□□ -2.13
CCDC28AQ8IWP9 MIR8063-201ENST00000621930 81 ntBASIC1.75□□□□□ -2.13
CCDC28AQ8IWP9 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
CCDC28AQ8IWP9 RNU6-199P-201ENST00000362954 107 ntBASIC1.74□□□□□ -2.13
CCDC28AQ8IWP9 Y_RNA.297-201ENST00000364950 91 ntBASIC1.74□□□□□ -2.13
CCDC28AQ8IWP9 RNU6-1138P-201ENST00000365359 106 ntBASIC1.74□□□□□ -2.13
CCDC28AQ8IWP9 RNU6-1228P-201ENST00000391014 107 ntBASIC1.74□□□□□ -2.13
CCDC28AQ8IWP9 RN7SKP51-201ENST00000410781 304 ntBASIC1.74□□□□□ -2.13
CCDC28AQ8IWP9 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.74□□□□□ -2.13
CCDC28AQ8IWP9 KRTAP19-11P-201ENST00000439851 104 ntBASIC1.74□□□□□ -2.13
CCDC28AQ8IWP9 AC093850.1-201ENST00000454121 251 ntBASIC1.74□□□□□ -2.13
CCDC28AQ8IWP9 RNU7-149P-201ENST00000516739 59 ntBASIC1.74□□□□□ -2.13
CCDC28AQ8IWP9 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.74□□□□□ -2.13
CCDC28AQ8IWP9 MIR4308-201ENST00000580634 81 ntBASIC1.74□□□□□ -2.13
CCDC28AQ8IWP9 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
CCDC28AQ8IWP9 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
CCDC28AQ8IWP9 Y_RNA.121-201ENST00000363309 113 ntBASIC1.73□□□□□ -2.13
CCDC28AQ8IWP9 RNU6-1020P-201ENST00000363684 107 ntBASIC1.73□□□□□ -2.13
CCDC28AQ8IWP9 RNU6-1318P-201ENST00000365389 103 ntBASIC1.73□□□□□ -2.13
CCDC28AQ8IWP9 MIR452-201ENST00000385020 85 ntBASIC1.73□□□□□ -2.13
CCDC28AQ8IWP9 SNORD72-201ENST00000390994 80 ntBASIC1.73□□□□□ -2.13
CCDC28AQ8IWP9 AL606845.1-201ENST00000404881 255 ntBASIC1.73□□□□□ -2.13
CCDC28AQ8IWP9 SCARNA8-201ENST00000515924 131 ntBASIC1.73□□□□□ -2.13
CCDC28AQ8IWP9 RNU6-138P-201ENST00000515952 107 ntBASIC1.73□□□□□ -2.13
CCDC28AQ8IWP9 Y_RNA.700-201ENST00000516806 100 ntBASIC1.73□□□□□ -2.13
CCDC28AQ8IWP9 RNU6-453P-201ENST00000516819 85 ntBASIC1.73□□□□□ -2.13
CCDC28AQ8IWP9 AC090425.1-201ENST00000610007 140 ntBASIC1.73□□□□□ -2.13
CCDC28AQ8IWP9 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.73□□□□□ -2.13
CCDC28AQ8IWP9 AL136360.1-201ENST00000503377 1900 ntBASIC1.72□□□□□ -2.13
CCDC28AQ8IWP9 MIR302D-201ENST00000362275 68 ntBASIC1.72□□□□□ -2.13
CCDC28AQ8IWP9 SNORD33-201ENST00000362761 85 ntBASIC1.72□□□□□ -2.13
CCDC28AQ8IWP9 Y_RNA.571-201ENST00000384753 98 ntBASIC1.72□□□□□ -2.13
CCDC28AQ8IWP9 MT-TT-201ENST00000387460 66 ntBASIC1.72□□□□□ -2.13
CCDC28AQ8IWP9 RNU2-55P-201ENST00000411146 174 ntBASIC1.72□□□□□ -2.13
CCDC28AQ8IWP9 AL138752.1-201ENST00000452964 351 ntBASIC1.72□□□□□ -2.13
CCDC28AQ8IWP9 AC234781.5-201ENST00000508429 271 ntBASIC1.72□□□□□ -2.13
CCDC28AQ8IWP9 RNU6-794P-201ENST00000517261 64 ntBASIC1.72□□□□□ -2.13
CCDC28AQ8IWP9 MIR4744-201ENST00000581563 82 ntBASIC1.72□□□□□ -2.13
CCDC28AQ8IWP9 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.72□□□□□ -2.13
CCDC28AQ8IWP9 Pinc.1-201ENST00000616452 154 ntBASIC1.72□□□□□ -2.13
CCDC28AQ8IWP9 SCARNA15.3-201ENST00000626315 122 ntBASIC1.72□□□□□ -2.13
CCDC28AQ8IWP9 SCARNA4.1-201ENST00000628597 123 ntBASIC1.72□□□□□ -2.13
CCDC28AQ8IWP9 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC1.72□□□□□ -2.13
CCDC28AQ8IWP9 Y_RNA.238-201ENST00000364441 102 ntBASIC1.71□□□□□ -2.14
CCDC28AQ8IWP9 Y_RNA.435-201ENST00000384095 112 ntBASIC1.71□□□□□ -2.14
CCDC28AQ8IWP9 RNU4-70P-201ENST00000384579 139 ntBASIC1.71□□□□□ -2.14
CCDC28AQ8IWP9 MIR934-201ENST00000401241 83 ntBASIC1.71□□□□□ -2.14
CCDC28AQ8IWP9 RNU2-2P-201ENST00000410396 191 ntBASIC1.71□□□□□ -2.14
CCDC28AQ8IWP9 Y_RNA.644-201ENST00000459006 113 ntBASIC1.71□□□□□ -2.14
CCDC28AQ8IWP9 Y_RNA.674-201ENST00000516362 113 ntBASIC1.71□□□□□ -2.14
CCDC28AQ8IWP9 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.71□□□□□ -2.14
CCDC28AQ8IWP9 AC024614.2-201ENST00000577584 372 ntBASIC1.71□□□□□ -2.14
CCDC28AQ8IWP9 RNU2-4P-201ENST00000606190 192 ntBASIC1.71□□□□□ -2.14
CCDC28AQ8IWP9 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.71□□□□□ -2.14
CCDC28AQ8IWP9 AC009831.4-201ENST00000620744 325 ntBASIC1.71□□□□□ -2.14
CCDC28AQ8IWP9 AC106754.2-201ENST00000623006 233 ntBASIC1.71□□□□□ -2.14
CCDC28AQ8IWP9 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.71□□□□□ -2.14
CCDC28AQ8IWP9 RNU6-457P-201ENST00000363999 107 ntBASIC1.7□□□□□ -2.14
CCDC28AQ8IWP9 SNORD38C-201ENST00000384381 69 ntBASIC1.7□□□□□ -2.14
CCDC28AQ8IWP9 RNU6-918P-201ENST00000391219 106 ntBASIC1.7□□□□□ -2.14
CCDC28AQ8IWP9 Y_RNA.793-201ENST00000411222 111 ntBASIC1.7□□□□□ -2.14
CCDC28AQ8IWP9 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.7□□□□□ -2.14
CCDC28AQ8IWP9 WWP1P1-201ENST00000466609 2769 ntBASIC1.7□□□□□ -2.14
CCDC28AQ8IWP9 AC079140.2-201ENST00000506193 142 ntBASIC1.7□□□□□ -2.14
CCDC28AQ8IWP9 CBX3P4-201ENST00000538909 354 ntBASIC1.7□□□□□ -2.14
CCDC28AQ8IWP9 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC1.7□□□□□ -2.14
CCDC28AQ8IWP9 MIR6132-201ENST00000622083 109 ntBASIC1.7□□□□□ -2.14
CCDC28AQ8IWP9 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
CCDC28AQ8IWP9 SNORD1A-201ENST00000364968 72 ntBASIC1.69□□□□□ -2.14
CCDC28AQ8IWP9 RNU6-728P-201ENST00000365375 104 ntBASIC1.69□□□□□ -2.14
CCDC28AQ8IWP9 SNORA2.2-201ENST00000365473 135 ntBASIC1.69□□□□□ -2.14
CCDC28AQ8IWP9 RNU6-997P-201ENST00000384725 107 ntBASIC1.69□□□□□ -2.14
CCDC28AQ8IWP9 SNORA48.3-201ENST00000391081 134 ntBASIC1.69□□□□□ -2.14
CCDC28AQ8IWP9 SNORA26-201ENST00000391286 122 ntBASIC1.69□□□□□ -2.14
CCDC28AQ8IWP9 AC092991.1-201ENST00000477176 376 ntBASIC1.69□□□□□ -2.14
CCDC28AQ8IWP9 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC1.69□□□□□ -2.14
CCDC28AQ8IWP9 Y_RNA.797-201ENST00000515977 94 ntBASIC1.69□□□□□ -2.14
CCDC28AQ8IWP9 RNU6-1299P-201ENST00000516316 100 ntBASIC1.69□□□□□ -2.14
CCDC28AQ8IWP9 MIR4422-201ENST00000581938 83 ntBASIC1.69□□□□□ -2.14
CCDC28AQ8IWP9 AL033523.1-201ENST00000605153 153 ntBASIC1.69□□□□□ -2.14
CCDC28AQ8IWP9 AC046143.2-201ENST00000609789 160 ntBASIC1.69□□□□□ -2.14
CCDC28AQ8IWP9 AC006441.5-201ENST00000612680 209 ntBASIC1.69□□□□□ -2.14
CCDC28AQ8IWP9 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
CCDC28AQ8IWP9 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
CCDC28AQ8IWP9 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.68□□□□□ -2.14
CCDC28AQ8IWP9 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.68□□□□□ -2.14
CCDC28AQ8IWP9 Y_RNA.29-201ENST00000362570 113 ntBASIC1.68□□□□□ -2.14
CCDC28AQ8IWP9 RNU6-268P-201ENST00000364174 107 ntBASIC1.68□□□□□ -2.14
CCDC28AQ8IWP9 RNU6-47P-201ENST00000383866 107 ntBASIC1.68□□□□□ -2.14
CCDC28AQ8IWP9 Y_RNA.432-201ENST00000384087 111 ntBASIC1.68□□□□□ -2.14
CCDC28AQ8IWP9 MIR15B-201ENST00000385045 98 ntBASIC1.68□□□□□ -2.14
CCDC28AQ8IWP9 MIR653-201ENST00000385279 96 ntBASIC1.68□□□□□ -2.14
CCDC28AQ8IWP9 RNU6-578P-201ENST00000390980 103 ntBASIC1.68□□□□□ -2.14
CCDC28AQ8IWP9 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.68□□□□□ -2.14
CCDC28AQ8IWP9 Y_RNA.622-201ENST00000411091 108 ntBASIC1.68□□□□□ -2.14
CCDC28AQ8IWP9 SNRPGP14-201ENST00000435400 219 ntBASIC1.68□□□□□ -2.14
CCDC28AQ8IWP9 AC015922.2-201ENST00000435593 184 ntBASIC1.68□□□□□ -2.14
CCDC28AQ8IWP9 AC108938.1-201ENST00000451204 136 ntBASIC1.68□□□□□ -2.14
CCDC28AQ8IWP9 RNU6-322P-201ENST00000516010 103 ntBASIC1.68□□□□□ -2.14
CCDC28AQ8IWP9 AC090142.3-201ENST00000519012 385 ntBASIC1.68□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 236 ms