Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 RNU6-1286P-201ENST00000383871 107 ntBASIC-1.97□□□□□ -2.72
CCDC88BA6NC98 Y_RNA.428-201ENST00000384078 102 ntBASIC-1.97□□□□□ -2.72
CCDC88BA6NC98 AL031667.1-201ENST00000440222 725 ntBASIC-1.97□□□□□ -2.72
CCDC88BA6NC98 RNU6-1194P-201ENST00000516208 104 ntBASIC-1.97□□□□□ -2.72
CCDC88BA6NC98 AC131281.1-201ENST00000522984 164 ntBASIC-1.97□□□□□ -2.72
CCDC88BA6NC98 AC073648.5-201ENST00000603502 305 ntBASIC-1.97□□□□□ -2.72
CCDC88BA6NC98 5S_rRNA.13-201ENST00000622298 123 ntBASIC-1.97□□□□□ -2.72
CCDC88BA6NC98 SNORA63.5-201ENST00000363548 123 ntBASIC-1.98□□□□□ -2.73
CCDC88BA6NC98 Y_RNA.192-201ENST00000363977 102 ntBASIC-1.98□□□□□ -2.73
CCDC88BA6NC98 Y_RNA.228-201ENST00000364346 98 ntBASIC-1.98□□□□□ -2.73
CCDC88BA6NC98 Y_RNA.253-201ENST00000364562 112 ntBASIC-1.98□□□□□ -2.73
CCDC88BA6NC98 RNU6-621P-201ENST00000364752 109 ntBASIC-1.98□□□□□ -2.73
CCDC88BA6NC98 Y_RNA.533-201ENST00000384596 114 ntBASIC-1.98□□□□□ -2.73
CCDC88BA6NC98 Y_RNA.588-201ENST00000391254 102 ntBASIC-1.98□□□□□ -2.73
CCDC88BA6NC98 RNU6ATAC42P-201ENST00000408637 95 ntBASIC-1.98□□□□□ -2.73
CCDC88BA6NC98 RNU6-602P-201ENST00000411155 105 ntBASIC-1.98□□□□□ -2.73
CCDC88BA6NC98 MTATP6P18-201ENST00000417994 673 ntBASIC-1.98□□□□□ -2.73
CCDC88BA6NC98 AC091144.1-201ENST00000519573 138 ntBASIC-1.98□□□□□ -2.73
CCDC88BA6NC98 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC-1.98□□□□□ -2.73
CCDC88BA6NC98 MTND4LP25-201ENST00000570218 163 ntBASIC-1.98□□□□□ -2.73
CCDC88BA6NC98 MIR4473-201ENST00000583731 91 ntBASIC-1.98□□□□□ -2.73
CCDC88BA6NC98 AC008764.5-201ENST00000597851 190 ntTSL 5 BASIC-1.98□□□□□ -2.73
CCDC88BA6NC98 AL158050.2-201ENST00000605336 568 ntBASIC-1.98□□□□□ -2.73
CCDC88BA6NC98 AL512506.1-201ENST00000613918 449 ntBASIC-1.98□□□□□ -2.73
CCDC88BA6NC98 AL445984.1-201ENST00000637834 659 ntBASIC-1.98□□□□□ -2.73
CCDC88BA6NC98 Y_RNA.128-201ENST00000363391 112 ntBASIC-1.99□□□□□ -2.73
CCDC88BA6NC98 SNORD74.6-201ENST00000364796 70 ntBASIC-1.99□□□□□ -2.73
CCDC88BA6NC98 SNORD41.1-201ENST00000391000 69 ntBASIC-1.99□□□□□ -2.73
CCDC88BA6NC98 RPL39P5-202ENST00000512505 151 ntBASIC-1.99□□□□□ -2.73
CCDC88BA6NC98 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC-1.99□□□□□ -2.73
CCDC88BA6NC98 AC068137.4-201ENST00000638485 296 ntBASIC-1.99□□□□□ -2.73
CCDC88BA6NC98 SNORA24-201ENST00000384096 131 ntBASIC-2□□□□□ -2.73
CCDC88BA6NC98 MIRLET7F2-201ENST00000385277 83 ntBASIC-2□□□□□ -2.73
CCDC88BA6NC98 Y_RNA.637-201ENST00000459424 114 ntBASIC-2□□□□□ -2.73
CCDC88BA6NC98 RNU6-479P-201ENST00000516348 105 ntBASIC-2□□□□□ -2.73
CCDC88BA6NC98 MTND1P35-201ENST00000526739 508 ntBASIC-2□□□□□ -2.73
CCDC88BA6NC98 DEFB131E-201ENST00000532329 154 ntBASIC-2□□□□□ -2.73
CCDC88BA6NC98 AC024405.2-202ENST00000532731 184 ntBASIC-2□□□□□ -2.73
CCDC88BA6NC98 OSBPL9P5-201ENST00000542581 171 ntBASIC-2□□□□□ -2.73
CCDC88BA6NC98 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC-2□□□□□ -2.73
CCDC88BA6NC98 RNU6-462P-201ENST00000362659 105 ntBASIC-2.01□□□□□ -2.73
CCDC88BA6NC98 Y_RNA.46-201ENST00000362695 102 ntBASIC-2.01□□□□□ -2.73
CCDC88BA6NC98 RNU6-1082P-201ENST00000364574 107 ntBASIC-2.01□□□□□ -2.73
CCDC88BA6NC98 RNU6-769P-201ENST00000384407 104 ntBASIC-2.01□□□□□ -2.73
CCDC88BA6NC98 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC-2.01□□□□□ -2.73
CCDC88BA6NC98 snoU13.13-201ENST00000458842 104 ntBASIC-2.01□□□□□ -2.73
CCDC88BA6NC98 Y_RNA.56-201ENST00000362798 112 ntBASIC-2.01□□□□□ -2.73
CCDC88BA6NC98 RNU6-227P-201ENST00000362865 103 ntBASIC-2.01□□□□□ -2.73
CCDC88BA6NC98 RNU6-641P-201ENST00000384006 107 ntBASIC-2.01□□□□□ -2.73
CCDC88BA6NC98 RNU6-1250P-201ENST00000391218 107 ntBASIC-2.01□□□□□ -2.73
CCDC88BA6NC98 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC-2.01□□□□□ -2.73
CCDC88BA6NC98 MTND2P32-201ENST00000521584 1038 ntBASIC-2.01□□□□□ -2.73
CCDC88BA6NC98 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC-2.01□□□□□ -2.73
CCDC88BA6NC98 AC090616.2-202ENST00000584248 222 ntBASIC-2.01□□□□□ -2.73
CCDC88BA6NC98 MIR6129-201ENST00000616087 109 ntBASIC-2.01□□□□□ -2.73
CCDC88BA6NC98 AC019226.2-201ENST00000625973 424 ntBASIC-2.01□□□□□ -2.73
CCDC88BA6NC98 Y_RNA.232-201ENST00000364369 96 ntBASIC-2.02□□□□□ -2.73
CCDC88BA6NC98 RNU6-119P-201ENST00000364882 107 ntBASIC-2.02□□□□□ -2.73
CCDC88BA6NC98 Y_RNA.475-201ENST00000384345 101 ntBASIC-2.02□□□□□ -2.73
CCDC88BA6NC98 RNU6-1106P-201ENST00000390845 107 ntBASIC-2.02□□□□□ -2.73
CCDC88BA6NC98 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC-2.02□□□□□ -2.73
CCDC88BA6NC98 MIR8485-201ENST00000401372 91 ntBASIC-2.02□□□□□ -2.73
CCDC88BA6NC98 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC-2.02□□□□□ -2.73
CCDC88BA6NC98 RNU6-612P-201ENST00000516909 102 ntBASIC-2.02□□□□□ -2.73
CCDC88BA6NC98 RNU6-685P-201ENST00000517088 95 ntBASIC-2.02□□□□□ -2.73
CCDC88BA6NC98 MIR3118-1-201ENST00000581787 76 ntBASIC-2.02□□□□□ -2.73
CCDC88BA6NC98 Z97988.1-201ENST00000637697 135 ntBASIC-2.02□□□□□ -2.73
CCDC88BA6NC98 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC-2.03□□□□□ -2.73
CCDC88BA6NC98 Y_RNA.576-201ENST00000384781 102 ntBASIC-2.03□□□□□ -2.73
CCDC88BA6NC98 MTND3P9-201ENST00000429526 346 ntBASIC-2.03□□□□□ -2.73
CCDC88BA6NC98 MTCO3P42-201ENST00000509488 518 ntBASIC-2.03□□□□□ -2.73
CCDC88BA6NC98 MTCO3P39-201ENST00000514812 518 ntBASIC-2.03□□□□□ -2.73
CCDC88BA6NC98 SNORA25.10-201ENST00000515926 124 ntBASIC-2.03□□□□□ -2.73
CCDC88BA6NC98 AC134698.4-201ENST00000523451 826 ntBASIC-2.03□□□□□ -2.73
CCDC88BA6NC98 POLR3GP2-201ENST00000588366 668 ntBASIC-2.03□□□□□ -2.73
CCDC88BA6NC98 AC011373.1-201ENST00000607270 237 ntBASIC-2.03□□□□□ -2.73
CCDC88BA6NC98 RNU6-715P-201ENST00000365204 103 ntBASIC-2.04□□□□□ -2.74
CCDC88BA6NC98 AC074085.1-201ENST00000413598 418 ntBASIC-2.04□□□□□ -2.74
CCDC88BA6NC98 AC107027.2-201ENST00000512197 115 ntBASIC-2.04□□□□□ -2.74
CCDC88BA6NC98 SNORA25.16-201ENST00000516741 121 ntBASIC-2.04□□□□□ -2.74
CCDC88BA6NC98 AL136370.1-201ENST00000608166 691 ntBASIC-2.04□□□□□ -2.74
CCDC88BA6NC98 AC009159.2-201ENST00000617603 606 ntBASIC-2.04□□□□□ -2.74
CCDC88BA6NC98 Y_RNA.123-201ENST00000363338 102 ntBASIC-2.05□□□□□ -2.74
CCDC88BA6NC98 RNU6-1102P-201ENST00000516149 96 ntBASIC-2.05□□□□□ -2.74
CCDC88BA6NC98 BNIP3P39-201ENST00000601077 554 ntBASIC-2.05□□□□□ -2.74
CCDC88BA6NC98 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC-2.05□□□□□ -2.74
CCDC88BA6NC98 MIR539-201ENST00000365690 78 ntBASIC-2.06□□□□□ -2.74
CCDC88BA6NC98 RNU6-442P-201ENST00000383968 104 ntBASIC-2.06□□□□□ -2.74
CCDC88BA6NC98 Y_RNA.480-201ENST00000384364 102 ntBASIC-2.06□□□□□ -2.74
CCDC88BA6NC98 MIR450B-201ENST00000401182 78 ntBASIC-2.06□□□□□ -2.74
CCDC88BA6NC98 USP9YP30-201ENST00000430729 455 ntBASIC-2.06□□□□□ -2.74
CCDC88BA6NC98 MTND1P24-201ENST00000552175 861 ntBASIC-2.06□□□□□ -2.74
CCDC88BA6NC98 AC026741.1-201ENST00000605892 482 ntBASIC-2.06□□□□□ -2.74
CCDC88BA6NC98 Y_RNA.38-201ENST00000362617 102 ntBASIC-2.07□□□□□ -2.74
CCDC88BA6NC98 Y_RNA.114-201ENST00000363265 113 ntBASIC-2.07□□□□□ -2.74
CCDC88BA6NC98 RNU6-226P-201ENST00000363778 107 ntBASIC-2.07□□□□□ -2.74
CCDC88BA6NC98 RNU6-1062P-201ENST00000383908 107 ntBASIC-2.07□□□□□ -2.74
CCDC88BA6NC98 Y_RNA.494-201ENST00000384432 111 ntBASIC-2.07□□□□□ -2.74
CCDC88BA6NC98 RNU6-387P-201ENST00000411331 105 ntBASIC-2.07□□□□□ -2.74
CCDC88BA6NC98 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC-2.07□□□□□ -2.74
Retrieved 100 of 98,524 protein–RNA pairs in 293 ms