Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AC023934.1-201ENST00000574529 2389 ntBASIC0.73□□□□□ -2.29
CCDC40Q4G0X9 RNU6-1175P-201ENST00000365200 107 ntBASIC0.73□□□□□ -2.29
CCDC40Q4G0X9 Y_RNA.570-201ENST00000384750 101 ntBASIC0.73□□□□□ -2.29
CCDC40Q4G0X9 RNU6-699P-201ENST00000517081 110 ntBASIC0.73□□□□□ -2.29
CCDC40Q4G0X9 AL078603.1-201ENST00000603824 313 ntBASIC0.73□□□□□ -2.29
CCDC40Q4G0X9 AC025253.1-201ENST00000613623 543 ntBASIC0.73□□□□□ -2.29
CCDC40Q4G0X9 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.73□□□□□ -2.29
CCDC40Q4G0X9 MTND4LP32-201ENST00000636111 270 ntBASIC0.73□□□□□ -2.29
CCDC40Q4G0X9 AL442644.1-201ENST00000454390 3105 ntBASIC0.73□□□□□ -2.29
CCDC40Q4G0X9 AC068700.1-201ENST00000565862 3754 ntBASIC0.72□□□□□ -2.29
CCDC40Q4G0X9 Y_RNA.368-201ENST00000365547 113 ntBASIC0.72□□□□□ -2.29
CCDC40Q4G0X9 RNU6-1323P-201ENST00000384025 107 ntBASIC0.72□□□□□ -2.29
CCDC40Q4G0X9 MIR548J-201ENST00000408833 112 ntBASIC0.72□□□□□ -2.29
CCDC40Q4G0X9 RNU6-710P-201ENST00000410424 105 ntBASIC0.72□□□□□ -2.29
CCDC40Q4G0X9 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.72□□□□□ -2.29
CCDC40Q4G0X9 Y_RNA.714-201ENST00000517065 90 ntBASIC0.72□□□□□ -2.29
CCDC40Q4G0X9 AL590095.2-201ENST00000604136 117 ntBASIC0.72□□□□□ -2.29
CCDC40Q4G0X9 AC104465.1-201ENST00000611365 139 ntBASIC0.72□□□□□ -2.29
CCDC40Q4G0X9 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC0.72□□□□□ -2.29
CCDC40Q4G0X9 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.72□□□□□ -2.29
CCDC40Q4G0X9 Y_RNA.310-201ENST00000365063 113 ntBASIC0.71□□□□□ -2.3
CCDC40Q4G0X9 MIR508-201ENST00000384857 115 ntBASIC0.71□□□□□ -2.3
CCDC40Q4G0X9 AC005042.3-201ENST00000453230 174 ntBASIC0.71□□□□□ -2.3
CCDC40Q4G0X9 U7.7-201ENST00000459276 60 ntBASIC0.71□□□□□ -2.3
CCDC40Q4G0X9 AC113410.1-201ENST00000505029 247 ntBASIC0.71□□□□□ -2.3
CCDC40Q4G0X9 AC004817.2-201ENST00000561794 651 ntBASIC0.71□□□□□ -2.3
CCDC40Q4G0X9 CYP3A137P-201ENST00000562436 69 ntBASIC0.71□□□□□ -2.3
CCDC40Q4G0X9 AC006600.1-201ENST00000572529 153 ntBASIC0.71□□□□□ -2.3
CCDC40Q4G0X9 MIR4423-201ENST00000580922 80 ntBASIC0.71□□□□□ -2.3
CCDC40Q4G0X9 MIR151B-201ENST00000584249 96 ntBASIC0.71□□□□□ -2.3
CCDC40Q4G0X9 VN1R91P-201ENST00000594377 169 ntBASIC0.71□□□□□ -2.3
CCDC40Q4G0X9 AL355073.2-201ENST00000612106 557 ntBASIC0.71□□□□□ -2.3
CCDC40Q4G0X9 MIR6788-201ENST00000618842 66 ntBASIC0.71□□□□□ -2.3
CCDC40Q4G0X9 AC134026.1-201ENST00000623249 2239 ntBASIC0.7□□□□□ -2.3
CCDC40Q4G0X9 Y_RNA.259-201ENST00000364619 101 ntBASIC0.7□□□□□ -2.3
CCDC40Q4G0X9 Y_RNA.341-201ENST00000365341 102 ntBASIC0.7□□□□□ -2.3
CCDC40Q4G0X9 SNORD116-29-201ENST00000384516 83 ntBASIC0.7□□□□□ -2.3
CCDC40Q4G0X9 SNORD89-201ENST00000390981 114 ntBASIC0.7□□□□□ -2.3
CCDC40Q4G0X9 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC0.7□□□□□ -2.3
CCDC40Q4G0X9 AC098614.3-201ENST00000438957 440 ntBASIC0.7□□□□□ -2.3
CCDC40Q4G0X9 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC0.7□□□□□ -2.3
CCDC40Q4G0X9 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.7□□□□□ -2.3
CCDC40Q4G0X9 RNU7-116P-201ENST00000516940 62 ntBASIC0.7□□□□□ -2.3
CCDC40Q4G0X9 AC036111.3-201ENST00000526389 112 ntBASIC0.7□□□□□ -2.3
CCDC40Q4G0X9 POLR3GP1-201ENST00000594073 261 ntBASIC0.7□□□□□ -2.3
CCDC40Q4G0X9 RNU6-94P-201ENST00000607728 107 ntBASIC0.7□□□□□ -2.3
CCDC40Q4G0X9 SNORD14E-201ENST00000364009 85 ntBASIC0.69□□□□□ -2.3
CCDC40Q4G0X9 Y_RNA.387-201ENST00000383918 102 ntBASIC0.69□□□□□ -2.3
CCDC40Q4G0X9 RNU6-1040P-201ENST00000383974 107 ntBASIC0.69□□□□□ -2.3
CCDC40Q4G0X9 Y_RNA.505-201ENST00000384489 102 ntBASIC0.69□□□□□ -2.3
CCDC40Q4G0X9 RNU6-110P-201ENST00000384508 104 ntBASIC0.69□□□□□ -2.3
CCDC40Q4G0X9 RNY4P36-201ENST00000391116 96 ntBASIC0.69□□□□□ -2.3
CCDC40Q4G0X9 AL590004.1-201ENST00000405321 300 ntBASIC0.69□□□□□ -2.3
CCDC40Q4G0X9 MIR1302-7-201ENST00000408841 72 ntBASIC0.69□□□□□ -2.3
CCDC40Q4G0X9 AC091951.2-201ENST00000500762 203 ntBASIC0.69□□□□□ -2.3
CCDC40Q4G0X9 RNU6-277P-201ENST00000516272 106 ntBASIC0.69□□□□□ -2.3
CCDC40Q4G0X9 SNORA20.3-201ENST00000516880 132 ntBASIC0.69□□□□□ -2.3
CCDC40Q4G0X9 RNU11-2P-201ENST00000516898 142 ntBASIC0.69□□□□□ -2.3
CCDC40Q4G0X9 AC008133.2-201ENST00000624540 351 ntBASIC0.69□□□□□ -2.3
CCDC40Q4G0X9 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.69□□□□□ -2.3
CCDC40Q4G0X9 Y_RNA.148-201ENST00000363557 117 ntBASIC0.68□□□□□ -2.3
CCDC40Q4G0X9 Y_RNA.203-201ENST00000364106 102 ntBASIC0.68□□□□□ -2.3
CCDC40Q4G0X9 Y_RNA.456-201ENST00000384232 111 ntBASIC0.68□□□□□ -2.3
CCDC40Q4G0X9 SNORD99-201ENST00000408612 74 ntBASIC0.68□□□□□ -2.3
CCDC40Q4G0X9 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.68□□□□□ -2.3
CCDC40Q4G0X9 AC138393.2-201ENST00000414742 246 ntBASIC0.68□□□□□ -2.3
CCDC40Q4G0X9 MTCO2P27-201ENST00000420740 428 ntBASIC0.68□□□□□ -2.3
CCDC40Q4G0X9 AL392103.1-201ENST00000447000 198 ntBASIC0.68□□□□□ -2.3
CCDC40Q4G0X9 COX6CP6-201ENST00000490840 228 ntBASIC0.68□□□□□ -2.3
CCDC40Q4G0X9 AC004812.1-201ENST00000540773 146 ntBASIC0.68□□□□□ -2.3
CCDC40Q4G0X9 AC133485.1-201ENST00000567176 124 ntBASIC0.68□□□□□ -2.3
CCDC40Q4G0X9 AC138907.6-201ENST00000568401 126 ntBASIC0.68□□□□□ -2.3
CCDC40Q4G0X9 AC025627.3-201ENST00000582078 182 ntBASIC0.68□□□□□ -2.3
CCDC40Q4G0X9 MIR548AR-201ENST00000582191 57 ntBASIC0.68□□□□□ -2.3
CCDC40Q4G0X9 DEFB117-201ENST00000602356 141 ntBASIC0.68□□□□□ -2.3
CCDC40Q4G0X9 AP003357.1-201ENST00000604497 148 ntBASIC0.68□□□□□ -2.3
CCDC40Q4G0X9 MIR6734-201ENST00000621166 68 ntBASIC0.68□□□□□ -2.3
CCDC40Q4G0X9 7SK.10-201ENST00000621414 298 ntBASIC0.68□□□□□ -2.3
CCDC40Q4G0X9 MIR4251-201ENST00000635819 61 ntBASIC0.68□□□□□ -2.3
CCDC40Q4G0X9 SNORD81.1-201ENST00000363064 77 ntBASIC0.67□□□□□ -2.3
CCDC40Q4G0X9 SNORD28B-201ENST00000390993 75 ntBASIC0.67□□□□□ -2.3
CCDC40Q4G0X9 SNORD111-201ENST00000408139 94 ntBASIC0.67□□□□□ -2.3
CCDC40Q4G0X9 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC0.67□□□□□ -2.3
CCDC40Q4G0X9 RNU6-1110P-201ENST00000516462 101 ntBASIC0.67□□□□□ -2.3
CCDC40Q4G0X9 Y_RNA.718-201ENST00000517110 102 ntBASIC0.67□□□□□ -2.3
CCDC40Q4G0X9 AC024405.2-202ENST00000532731 184 ntBASIC0.67□□□□□ -2.3
CCDC40Q4G0X9 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC0.67□□□□□ -2.3
CCDC40Q4G0X9 MIR4714-201ENST00000580728 77 ntBASIC0.67□□□□□ -2.3
CCDC40Q4G0X9 AC005730.3-201ENST00000583067 366 ntBASIC0.67□□□□□ -2.3
CCDC40Q4G0X9 AC010205.1-201ENST00000616668 449 ntBASIC0.67□□□□□ -2.3
CCDC40Q4G0X9 MIR6516-201ENST00000630554 81 ntBASIC0.67□□□□□ -2.3
CCDC40Q4G0X9 MIR4272-201ENST00000635924 64 ntBASIC0.67□□□□□ -2.3
CCDC40Q4G0X9 Y_RNA.142-201ENST00000363491 102 ntBASIC0.66□□□□□ -2.3
CCDC40Q4G0X9 RNU6-654P-201ENST00000364373 107 ntBASIC0.66□□□□□ -2.3
CCDC40Q4G0X9 Y_RNA.331-201ENST00000365267 102 ntBASIC0.66□□□□□ -2.3
CCDC40Q4G0X9 Y_RNA.428-201ENST00000384078 102 ntBASIC0.66□□□□□ -2.3
CCDC40Q4G0X9 Y_RNA.463-201ENST00000384271 102 ntBASIC0.66□□□□□ -2.3
CCDC40Q4G0X9 SNORD38C-201ENST00000384381 69 ntBASIC0.66□□□□□ -2.3
CCDC40Q4G0X9 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.66□□□□□ -2.3
CCDC40Q4G0X9 AF228730.4-201ENST00000421457 183 ntBASIC0.66□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 277.1 ms