Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 RNU6-436P-201ENST00000516171 114 ntBASIC0.61□□□□□ -2.31
CLDN3O15551 RNU6-1110P-201ENST00000516462 101 ntBASIC0.61□□□□□ -2.31
CLDN3O15551 RNU6-1012P-201ENST00000516606 109 ntBASIC0.61□□□□□ -2.31
CLDN3O15551 AC011476.5-201ENST00000615594 130 ntBASIC0.61□□□□□ -2.31
CLDN3O15551 RNA5SP347-201ENST00000362445 119 ntBASIC0.6□□□□□ -2.31
CLDN3O15551 RNY3P11-201ENST00000364153 102 ntBASIC0.6□□□□□ -2.31
CLDN3O15551 RNU6-310P-201ENST00000384655 107 ntBASIC0.6□□□□□ -2.31
CLDN3O15551 SNORD111-201ENST00000408139 94 ntBASIC0.6□□□□□ -2.31
CLDN3O15551 RNA5SP121-201ENST00000516537 101 ntBASIC0.6□□□□□ -2.31
CLDN3O15551 AC036111.3-201ENST00000526389 112 ntBASIC0.6□□□□□ -2.31
CLDN3O15551 AL512605.2-201ENST00000592972 256 ntBASIC0.6□□□□□ -2.31
CLDN3O15551 WT1-AS_8.1-201ENST00000615200 275 ntBASIC0.6□□□□□ -2.31
CLDN3O15551 MIR6515-201ENST00000619843 57 ntBASIC0.6□□□□□ -2.31
CLDN3O15551 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.59□□□□□ -2.31
CLDN3O15551 Y_RNA.166-201ENST00000363730 102 ntBASIC0.59□□□□□ -2.31
CLDN3O15551 RNU6-1188P-201ENST00000363795 107 ntBASIC0.59□□□□□ -2.31
CLDN3O15551 MIR628-201ENST00000385229 95 ntBASIC0.59□□□□□ -2.31
CLDN3O15551 RNU6-192P-201ENST00000391253 100 ntBASIC0.59□□□□□ -2.31
CLDN3O15551 RNU6-1304P-201ENST00000411374 106 ntBASIC0.59□□□□□ -2.31
CLDN3O15551 AC005534.2-201ENST00000431047 433 ntBASIC0.59□□□□□ -2.31
CLDN3O15551 MTND1P4-201ENST00000435196 415 ntBASIC0.59□□□□□ -2.31
CLDN3O15551 FGF7P6-202ENST00000451282 293 ntBASIC0.59□□□□□ -2.31
CLDN3O15551 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.59□□□□□ -2.31
CLDN3O15551 RNA5SP436-201ENST00000516020 115 ntBASIC0.59□□□□□ -2.31
CLDN3O15551 RNU4-54P-201ENST00000516428 129 ntBASIC0.59□□□□□ -2.31
CLDN3O15551 RNU6-966P-201ENST00000516479 104 ntBASIC0.59□□□□□ -2.31
CLDN3O15551 RNU11-2P-201ENST00000516898 142 ntBASIC0.59□□□□□ -2.31
CLDN3O15551 MIR4300-201ENST00000581016 96 ntBASIC0.59□□□□□ -2.31
CLDN3O15551 MIR5690-201ENST00000583739 73 ntBASIC0.59□□□□□ -2.31
CLDN3O15551 MIR6513-201ENST00000621188 64 ntBASIC0.59□□□□□ -2.31
CLDN3O15551 MIR4251-201ENST00000635819 61 ntBASIC0.59□□□□□ -2.31
CLDN3O15551 AL442644.1-201ENST00000454390 3105 ntBASIC0.59□□□□□ -2.32
CLDN3O15551 AC134026.1-201ENST00000623249 2239 ntBASIC0.58□□□□□ -2.32
CLDN3O15551 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.58□□□□□ -2.32
CLDN3O15551 AC068700.1-201ENST00000565862 3754 ntBASIC0.58□□□□□ -2.32
CLDN3O15551 Y_RNA.148-201ENST00000363557 117 ntBASIC0.58□□□□□ -2.32
CLDN3O15551 RNA5SP499-201ENST00000363982 119 ntBASIC0.58□□□□□ -2.32
CLDN3O15551 SNORD14E-201ENST00000364009 85 ntBASIC0.58□□□□□ -2.32
CLDN3O15551 Y_RNA.279-201ENST00000364763 95 ntBASIC0.58□□□□□ -2.32
CLDN3O15551 Y_RNA.368-201ENST00000365547 113 ntBASIC0.58□□□□□ -2.32
CLDN3O15551 SNORA2B-201ENST00000384583 137 ntBASIC0.58□□□□□ -2.32
CLDN3O15551 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.58□□□□□ -2.32
CLDN3O15551 RNU6-855P-201ENST00000410395 104 ntBASIC0.58□□□□□ -2.32
CLDN3O15551 AC092628.1-201ENST00000436250 252 ntBASIC0.58□□□□□ -2.32
CLDN3O15551 RNU6-1132P-201ENST00000459214 107 ntBASIC0.58□□□□□ -2.32
CLDN3O15551 AC098869.1-201ENST00000481627 292 ntBASIC0.58□□□□□ -2.32
CLDN3O15551 RNU6-470P-201ENST00000515954 104 ntBASIC0.58□□□□□ -2.32
CLDN3O15551 AC011195.1-201ENST00000578177 177 ntBASIC0.58□□□□□ -2.32
CLDN3O15551 MIR4659A-201ENST00000580269 81 ntBASIC0.58□□□□□ -2.32
CLDN3O15551 AC008133.2-201ENST00000624540 351 ntBASIC0.58□□□□□ -2.32
CLDN3O15551 Y_RNA.160-201ENST00000363677 92 ntBASIC0.57□□□□□ -2.32
CLDN3O15551 SNORD113.3-201ENST00000364630 78 ntBASIC0.57□□□□□ -2.32
CLDN3O15551 RNU6-890P-201ENST00000384121 107 ntBASIC0.57□□□□□ -2.32
CLDN3O15551 RNU6-1067P-201ENST00000384752 107 ntBASIC0.57□□□□□ -2.32
CLDN3O15551 MIR802-201ENST00000390235 94 ntBASIC0.57□□□□□ -2.32
CLDN3O15551 PDCL2P1-201ENST00000419302 352 ntBASIC0.57□□□□□ -2.32
CLDN3O15551 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.57□□□□□ -2.32
CLDN3O15551 AC022441.3-201ENST00000605737 136 ntBASIC0.57□□□□□ -2.32
CLDN3O15551 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.57□□□□□ -2.32
CLDN3O15551 TPTEP1-208ENST00000636884 213 ntBASIC0.57□□□□□ -2.32
CLDN3O15551 Y_RNA.146-201ENST00000363549 102 ntBASIC0.56□□□□□ -2.32
CLDN3O15551 Y_RNA.230-201ENST00000364348 109 ntBASIC0.56□□□□□ -2.32
CLDN3O15551 RNU6-654P-201ENST00000364373 107 ntBASIC0.56□□□□□ -2.32
CLDN3O15551 Y_RNA.314-201ENST00000365114 102 ntBASIC0.56□□□□□ -2.32
CLDN3O15551 Y_RNA.329-201ENST00000365209 107 ntBASIC0.56□□□□□ -2.32
CLDN3O15551 SNORD38C-201ENST00000384381 69 ntBASIC0.56□□□□□ -2.32
CLDN3O15551 RNU1-119P-201ENST00000391122 165 ntBASIC0.56□□□□□ -2.32
CLDN3O15551 RNU6-710P-201ENST00000410424 105 ntBASIC0.56□□□□□ -2.32
CLDN3O15551 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.56□□□□□ -2.32
CLDN3O15551 MTND1P2-201ENST00000430604 821 ntBASIC0.56□□□□□ -2.32
CLDN3O15551 AL157398.1-201ENST00000452981 186 ntBASIC0.56□□□□□ -2.32
CLDN3O15551 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC0.56□□□□□ -2.32
CLDN3O15551 Y_RNA.118-201ENST00000363300 101 ntBASIC0.55□□□□□ -2.32
CLDN3O15551 RNY1-201ENST00000364228 113 ntBASIC0.55□□□□□ -2.32
CLDN3O15551 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.55□□□□□ -2.32
CLDN3O15551 RNA5SP222-201ENST00000411039 105 ntBASIC0.55□□□□□ -2.32
CLDN3O15551 MCFD2P1-201ENST00000417812 300 ntBASIC0.55□□□□□ -2.32
CLDN3O15551 AL392103.1-201ENST00000447000 198 ntBASIC0.55□□□□□ -2.32
CLDN3O15551 NDUFAF4P4-201ENST00000454883 502 ntBASIC0.55□□□□□ -2.32
CLDN3O15551 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.55□□□□□ -2.32
CLDN3O15551 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC0.55□□□□□ -2.32
CLDN3O15551 AC012433.1-201ENST00000588916 398 ntBASIC0.55□□□□□ -2.32
CLDN3O15551 Z83818.1-201ENST00000603584 150 ntBASIC0.55□□□□□ -2.32
CLDN3O15551 RBM11P1-201ENST00000604951 799 ntBASIC0.55□□□□□ -2.32
CLDN3O15551 JPX_2.1-201ENST00000614161 69 ntBASIC0.55□□□□□ -2.32
CLDN3O15551 U2.1-201ENST00000618978 145 ntBASIC0.55□□□□□ -2.32
CLDN3O15551 MIR6516-201ENST00000630554 81 ntBASIC0.55□□□□□ -2.32
CLDN3O15551 SNORD81.2-201ENST00000365153 76 ntBASIC0.54□□□□□ -2.32
CLDN3O15551 RNU6-945P-201ENST00000383947 107 ntBASIC0.54□□□□□ -2.32
CLDN3O15551 SNORA36.2-201ENST00000384004 127 ntBASIC0.54□□□□□ -2.32
CLDN3O15551 RNU6-1323P-201ENST00000384025 107 ntBASIC0.54□□□□□ -2.32
CLDN3O15551 RNA5SP95-201ENST00000410319 137 ntBASIC0.54□□□□□ -2.32
CLDN3O15551 Y_RNA.599-201ENST00000410489 109 ntBASIC0.54□□□□□ -2.32
CLDN3O15551 AC098934.3-201ENST00000430450 190 ntBASIC0.54□□□□□ -2.32
CLDN3O15551 RNU6-911P-201ENST00000516523 104 ntBASIC0.54□□□□□ -2.32
CLDN3O15551 RNU6-229P-201ENST00000516614 102 ntBASIC0.54□□□□□ -2.32
CLDN3O15551 MIR548AR-201ENST00000582191 57 ntBASIC0.54□□□□□ -2.32
CLDN3O15551 POLR3GP1-201ENST00000594073 261 ntBASIC0.54□□□□□ -2.32
CLDN3O15551 AL355073.2-201ENST00000612106 557 ntBASIC0.54□□□□□ -2.32
CLDN3O15551 AC007742.2-201ENST00000618226 398 ntBASIC0.54□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 190 ms