Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 AC068657.1-201ENST00000520807 306 ntBASIC3.07□□□□□ -1.92
SOX1O00570 MIR5582-201ENST00000579697 68 ntBASIC3.07□□□□□ -1.92
SOX1O00570 AC022217.4-201ENST00000604389 163 ntBASIC3.07□□□□□ -1.92
SOX1O00570 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
SOX1O00570 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.07□□□□□ -1.92
SOX1O00570 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.07□□□□□ -1.92
SOX1O00570 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.07□□□□□ -1.92
SOX1O00570 MAPK10-362ENST00000641864 4484 ntBASIC3.07□□□□□ -1.92
SOX1O00570 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC3.06□□□□□ -1.92
SOX1O00570 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.06□□□□□ -1.92
SOX1O00570 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.06□□□□□ -1.92
SOX1O00570 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.06□□□□□ -1.92
SOX1O00570 RNU6-1107P-201ENST00000364817 104 ntBASIC3.06□□□□□ -1.92
SOX1O00570 MIR522-201ENST00000385071 87 ntBASIC3.06□□□□□ -1.92
SOX1O00570 RNA5SP425-201ENST00000410336 112 ntBASIC3.06□□□□□ -1.92
SOX1O00570 AC006539.3-201ENST00000454258 129 ntBASIC3.06□□□□□ -1.92
SOX1O00570 AP002004.2-201ENST00000531656 154 ntBASIC3.06□□□□□ -1.92
SOX1O00570 AC106754.2-201ENST00000623006 233 ntBASIC3.06□□□□□ -1.92
SOX1O00570 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
SOX1O00570 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.05□□□□□ -1.92
SOX1O00570 Y_RNA.85-201ENST00000363014 111 ntBASIC3.05□□□□□ -1.92
SOX1O00570 Y_RNA.410-201ENST00000383992 113 ntBASIC3.05□□□□□ -1.92
SOX1O00570 MIR515-2-201ENST00000384883 83 ntBASIC3.05□□□□□ -1.92
SOX1O00570 MIR515-1-201ENST00000384884 83 ntBASIC3.05□□□□□ -1.92
SOX1O00570 MIR489-201ENST00000384923 84 ntBASIC3.05□□□□□ -1.92
SOX1O00570 MIR518F-201ENST00000384973 87 ntBASIC3.05□□□□□ -1.92
SOX1O00570 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
SOX1O00570 RNA5SP323-201ENST00000391094 133 ntBASIC3.05□□□□□ -1.92
SOX1O00570 RNU4-53P-201ENST00000410828 140 ntBASIC3.05□□□□□ -1.92
SOX1O00570 RNU1-131P-201ENST00000458943 161 ntBASIC3.05□□□□□ -1.92
SOX1O00570 AC018868.1-201ENST00000491307 315 ntBASIC3.05□□□□□ -1.92
SOX1O00570 RN7SL636P-201ENST00000497504 294 ntBASIC3.05□□□□□ -1.92
SOX1O00570 RNU6-537P-201ENST00000517277 103 ntBASIC3.05□□□□□ -1.92
SOX1O00570 MIR5197-201ENST00000583721 112 ntBASIC3.05□□□□□ -1.92
SOX1O00570 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.05□□□□□ -1.92
SOX1O00570 AC134878.1-201ENST00000619901 243 ntBASIC3.05□□□□□ -1.92
SOX1O00570 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.05□□□□□ -1.92
SOX1O00570 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
SOX1O00570 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC3.05□□□□□ -1.92
SOX1O00570 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.05□□□□□ -1.92
SOX1O00570 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
SOX1O00570 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.04□□□□□ -1.92
SOX1O00570 Y_RNA.366-201ENST00000365540 102 ntBASIC3.04□□□□□ -1.92
SOX1O00570 Y_RNA.369-201ENST00000365568 117 ntBASIC3.04□□□□□ -1.92
SOX1O00570 MIR802-201ENST00000390235 94 ntBASIC3.04□□□□□ -1.92
SOX1O00570 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC3.04□□□□□ -1.92
SOX1O00570 RPS26P48-201ENST00000491713 339 ntBASIC3.04□□□□□ -1.92
SOX1O00570 MIR2276-201ENST00000516886 89 ntBASIC3.04□□□□□ -1.92
SOX1O00570 AC024995.1-201ENST00000523014 93 ntBASIC3.04□□□□□ -1.92
SOX1O00570 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.04□□□□□ -1.92
SOX1O00570 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC3.04□□□□□ -1.92
SOX1O00570 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
SOX1O00570 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
SOX1O00570 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.03□□□□□ -1.92
SOX1O00570 SNORA1B-201ENST00000362535 133 ntBASIC3.03□□□□□ -1.92
SOX1O00570 Y_RNA.99-201ENST00000363138 105 ntBASIC3.03□□□□□ -1.92
SOX1O00570 SNORA9.2-201ENST00000365361 133 ntBASIC3.03□□□□□ -1.92
SOX1O00570 SNORA8-201ENST00000384574 139 ntBASIC3.03□□□□□ -1.92
SOX1O00570 SNORD12C-201ENST00000386307 89 ntBASIC3.03□□□□□ -1.92
SOX1O00570 RNU6-554P-201ENST00000410466 106 ntBASIC3.03□□□□□ -1.92
SOX1O00570 ATP5J2P3-201ENST00000451550 258 ntBASIC3.03□□□□□ -1.92
SOX1O00570 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC3.03□□□□□ -1.92
SOX1O00570 CTSLP2-204ENST00000629029 392 ntBASIC3.03□□□□□ -1.92
SOX1O00570 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC3.03□□□□□ -1.92
SOX1O00570 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC3.03□□□□□ -1.93
SOX1O00570 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
SOX1O00570 AL355596.1-201ENST00000565399 3996 ntBASIC3.02□□□□□ -1.93
SOX1O00570 Y_RNA.140-201ENST00000363474 103 ntBASIC3.02□□□□□ -1.93
SOX1O00570 SNORD114-6-201ENST00000364393 72 ntBASIC3.02□□□□□ -1.93
SOX1O00570 RNU6-220P-201ENST00000390919 107 ntBASIC3.02□□□□□ -1.93
SOX1O00570 AL117342.1-201ENST00000404861 406 ntBASIC3.02□□□□□ -1.93
SOX1O00570 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.02□□□□□ -1.93
SOX1O00570 MIR4781-201ENST00000585250 76 ntBASIC3.02□□□□□ -1.93
SOX1O00570 AC006441.5-201ENST00000612680 209 ntBASIC3.02□□□□□ -1.93
SOX1O00570 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
SOX1O00570 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.02□□□□□ -1.93
SOX1O00570 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC3.01□□□□□ -1.93
SOX1O00570 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC3.01□□□□□ -1.93
SOX1O00570 SNORA25B-201ENST00000365507 128 ntBASIC3.01□□□□□ -1.93
SOX1O00570 SNORD21-201ENST00000383953 95 ntBASIC3.01□□□□□ -1.93
SOX1O00570 RNU6-1189P-201ENST00000383958 107 ntBASIC3.01□□□□□ -1.93
SOX1O00570 RNU6-442P-201ENST00000383968 104 ntBASIC3.01□□□□□ -1.93
SOX1O00570 MIR27B-201ENST00000385129 97 ntBASIC3.01□□□□□ -1.93
SOX1O00570 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC3.01□□□□□ -1.93
SOX1O00570 MIR1302-5-201ENST00000408164 150 ntBASIC3.01□□□□□ -1.93
SOX1O00570 RNY4P30-201ENST00000410216 95 ntBASIC3.01□□□□□ -1.93
SOX1O00570 RNA5SP21-201ENST00000410917 96 ntBASIC3.01□□□□□ -1.93
SOX1O00570 AC010401.1-201ENST00000463867 348 ntBASIC3.01□□□□□ -1.93
SOX1O00570 AC004486.1-201ENST00000546846 233 ntBASIC3.01□□□□□ -1.93
SOX1O00570 MIR3616-201ENST00000584070 92 ntBASIC3.01□□□□□ -1.93
SOX1O00570 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.01□□□□□ -1.93
SOX1O00570 TP73-AS1.1-201ENST00000611447 161 ntBASIC3.01□□□□□ -1.93
SOX1O00570 MIR376A2-201ENST00000636782 80 ntBASIC3.01□□□□□ -1.93
SOX1O00570 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
SOX1O00570 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3□□□□□ -1.93
SOX1O00570 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC3□□□□□ -1.93
SOX1O00570 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3□□□□□ -1.93
SOX1O00570 RNU6-1084P-201ENST00000362498 107 ntBASIC3□□□□□ -1.93
SOX1O00570 SNORD114-1-201ENST00000362705 72 ntBASIC3□□□□□ -1.93
SOX1O00570 SNORD68-201ENST00000363214 84 ntBASIC3□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 172.7 ms