Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AC012005.1-201ENST00000624575 75 ntBASIC1.88□□□□□ -2.11
CCDC28AQ8IWP9 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
CCDC28AQ8IWP9 U8.5-201ENST00000364528 136 ntBASIC1.87□□□□□ -2.11
CCDC28AQ8IWP9 Y_RNA.262-201ENST00000364641 102 ntBASIC1.87□□□□□ -2.11
CCDC28AQ8IWP9 RNY4P28-201ENST00000365281 93 ntBASIC1.87□□□□□ -2.11
CCDC28AQ8IWP9 RNU6-969P-201ENST00000383900 105 ntBASIC1.87□□□□□ -2.11
CCDC28AQ8IWP9 Y_RNA.552-201ENST00000384665 112 ntBASIC1.87□□□□□ -2.11
CCDC28AQ8IWP9 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.87□□□□□ -2.11
CCDC28AQ8IWP9 Z92545.1-201ENST00000411782 234 ntBASIC1.87□□□□□ -2.11
CCDC28AQ8IWP9 SNRPGP10-201ENST00000432323 225 ntBASIC1.87□□□□□ -2.11
CCDC28AQ8IWP9 Z98949.2-201ENST00000440996 144 ntBASIC1.87□□□□□ -2.11
CCDC28AQ8IWP9 SNORA44.1-201ENST00000517031 108 ntBASIC1.87□□□□□ -2.11
CCDC28AQ8IWP9 GTF3AP2-201ENST00000557014 266 ntBASIC1.87□□□□□ -2.11
CCDC28AQ8IWP9 MIR4762-201ENST00000585261 75 ntBASIC1.87□□□□□ -2.11
CCDC28AQ8IWP9 AC011921.3-201ENST00000605540 361 ntBASIC1.87□□□□□ -2.11
CCDC28AQ8IWP9 MIR8074-201ENST00000615081 81 ntBASIC1.87□□□□□ -2.11
CCDC28AQ8IWP9 AL513423.1-201ENST00000621695 132 ntBASIC1.87□□□□□ -2.11
CCDC28AQ8IWP9 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.87□□□□□ -2.11
CCDC28AQ8IWP9 RNU6-1209P-201ENST00000363655 107 ntBASIC1.86□□□□□ -2.11
CCDC28AQ8IWP9 Y_RNA.796-201ENST00000364268 102 ntBASIC1.86□□□□□ -2.11
CCDC28AQ8IWP9 Y_RNA.799-201ENST00000364992 102 ntBASIC1.86□□□□□ -2.11
CCDC28AQ8IWP9 MIR676-201ENST00000390702 67 ntBASIC1.86□□□□□ -2.11
CCDC28AQ8IWP9 RNA5SP496-201ENST00000391240 109 ntBASIC1.86□□□□□ -2.11
CCDC28AQ8IWP9 MIR1267-201ENST00000408723 78 ntBASIC1.86□□□□□ -2.11
CCDC28AQ8IWP9 RNU6-383P-201ENST00000410864 94 ntBASIC1.86□□□□□ -2.11
CCDC28AQ8IWP9 RPL23AP91-201ENST00000569211 455 ntBASIC1.86□□□□□ -2.11
CCDC28AQ8IWP9 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.86□□□□□ -2.11
CCDC28AQ8IWP9 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC1.86□□□□□ -2.11
CCDC28AQ8IWP9 AC141273.2-201ENST00000618989 130 ntBASIC1.86□□□□□ -2.11
CCDC28AQ8IWP9 RNU6-1123P-201ENST00000362347 106 ntBASIC1.85□□□□□ -2.11
CCDC28AQ8IWP9 RNU4-10P-201ENST00000364383 140 ntBASIC1.85□□□□□ -2.11
CCDC28AQ8IWP9 RNU6-424P-201ENST00000384367 105 ntBASIC1.85□□□□□ -2.11
CCDC28AQ8IWP9 Y_RNA.515-201ENST00000384535 112 ntBASIC1.85□□□□□ -2.11
CCDC28AQ8IWP9 MIR626-201ENST00000385032 94 ntBASIC1.85□□□□□ -2.11
CCDC28AQ8IWP9 MIR522-201ENST00000385071 87 ntBASIC1.85□□□□□ -2.11
CCDC28AQ8IWP9 RNU6-131P-201ENST00000391144 107 ntBASIC1.85□□□□□ -2.11
CCDC28AQ8IWP9 RN7SKP192-201ENST00000411291 327 ntBASIC1.85□□□□□ -2.11
CCDC28AQ8IWP9 MLLT10P1-201ENST00000418346 262 ntBASIC1.85□□□□□ -2.11
CCDC28AQ8IWP9 RPL31P63-201ENST00000422565 375 ntBASIC1.85□□□□□ -2.11
CCDC28AQ8IWP9 PGBD4P5-201ENST00000445958 426 ntBASIC1.85□□□□□ -2.11
CCDC28AQ8IWP9 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC1.85□□□□□ -2.11
CCDC28AQ8IWP9 RNU6-388P-201ENST00000517012 105 ntBASIC1.85□□□□□ -2.11
CCDC28AQ8IWP9 RNU6-389P-201ENST00000517048 105 ntBASIC1.85□□□□□ -2.11
CCDC28AQ8IWP9 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.85□□□□□ -2.11
CCDC28AQ8IWP9 AC087685.1-201ENST00000587507 141 ntBASIC1.85□□□□□ -2.11
CCDC28AQ8IWP9 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC1.85□□□□□ -2.11
CCDC28AQ8IWP9 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC1.84□□□□□ -2.11
CCDC28AQ8IWP9 MIR424-201ENST00000362227 98 ntBASIC1.84□□□□□ -2.11
CCDC28AQ8IWP9 RNU6-653P-201ENST00000363074 106 ntBASIC1.84□□□□□ -2.11
CCDC28AQ8IWP9 SNORA5B-201ENST00000363786 132 ntBASIC1.84□□□□□ -2.11
CCDC28AQ8IWP9 RNU6-203P-201ENST00000384038 104 ntBASIC1.84□□□□□ -2.11
CCDC28AQ8IWP9 MIR1278-201ENST00000408753 81 ntBASIC1.84□□□□□ -2.11
CCDC28AQ8IWP9 RNA5SP184-201ENST00000411071 108 ntBASIC1.84□□□□□ -2.11
CCDC28AQ8IWP9 Y_RNA.626-201ENST00000411288 95 ntBASIC1.84□□□□□ -2.11
CCDC28AQ8IWP9 RN7SKP101-201ENST00000411376 320 ntBASIC1.84□□□□□ -2.11
CCDC28AQ8IWP9 CALM2P4-201ENST00000430810 426 ntBASIC1.84□□□□□ -2.11
CCDC28AQ8IWP9 AC023449.1-201ENST00000454464 154 ntBASIC1.84□□□□□ -2.11
CCDC28AQ8IWP9 RNA5SP24-201ENST00000516478 95 ntBASIC1.84□□□□□ -2.11
CCDC28AQ8IWP9 RNU6-1007P-201ENST00000516586 107 ntBASIC1.84□□□□□ -2.11
CCDC28AQ8IWP9 RNA5SP168-201ENST00000516642 112 ntBASIC1.84□□□□□ -2.11
CCDC28AQ8IWP9 AC009779.6-201ENST00000603972 165 ntBASIC1.84□□□□□ -2.11
CCDC28AQ8IWP9 AC016717.2-201ENST00000609089 5141 ntBASIC1.84□□□□□ -2.12
CCDC28AQ8IWP9 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
CCDC28AQ8IWP9 Y_RNA.24-201ENST00000362508 103 ntBASIC1.83□□□□□ -2.12
CCDC28AQ8IWP9 Y_RNA.111-201ENST00000363248 100 ntBASIC1.83□□□□□ -2.12
CCDC28AQ8IWP9 Y_RNA.200-201ENST00000364018 102 ntBASIC1.83□□□□□ -2.12
CCDC28AQ8IWP9 RNA5SP160-201ENST00000364866 120 ntBASIC1.83□□□□□ -2.12
CCDC28AQ8IWP9 RNU4-17P-201ENST00000365598 141 ntBASIC1.83□□□□□ -2.12
CCDC28AQ8IWP9 MIR194-1-201ENST00000384892 85 ntBASIC1.83□□□□□ -2.12
CCDC28AQ8IWP9 MIR30A-201ENST00000385092 71 ntBASIC1.83□□□□□ -2.12
CCDC28AQ8IWP9 MIR27B-201ENST00000385129 97 ntBASIC1.83□□□□□ -2.12
CCDC28AQ8IWP9 MIR660-201ENST00000385235 97 ntBASIC1.83□□□□□ -2.12
CCDC28AQ8IWP9 U8.16-201ENST00000391279 133 ntBASIC1.83□□□□□ -2.12
CCDC28AQ8IWP9 RNU6ATAC23P-201ENST00000408448 123 ntBASIC1.83□□□□□ -2.12
CCDC28AQ8IWP9 MIR1298-201ENST00000408783 112 ntBASIC1.83□□□□□ -2.12
CCDC28AQ8IWP9 AL139156.1-201ENST00000412785 841 ntBASIC1.83□□□□□ -2.12
CCDC28AQ8IWP9 AL161935.2-201ENST00000414627 60 ntBASIC1.83□□□□□ -2.12
CCDC28AQ8IWP9 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC1.83□□□□□ -2.12
CCDC28AQ8IWP9 CYCTP-201ENST00000504253 315 ntBASIC1.83□□□□□ -2.12
CCDC28AQ8IWP9 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.83□□□□□ -2.12
CCDC28AQ8IWP9 AC021269.2-201ENST00000532318 330 ntBASIC1.83□□□□□ -2.12
CCDC28AQ8IWP9 AC120024.3-201ENST00000603167 156 ntBASIC1.83□□□□□ -2.12
CCDC28AQ8IWP9 AC078938.1-201ENST00000620993 318 ntBASIC1.83□□□□□ -2.12
CCDC28AQ8IWP9 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.83□□□□□ -2.12
CCDC28AQ8IWP9 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
CCDC28AQ8IWP9 MIRLET7C-201ENST00000362160 84 ntBASIC1.82□□□□□ -2.12
CCDC28AQ8IWP9 Y_RNA.199-201ENST00000364014 102 ntBASIC1.82□□□□□ -2.12
CCDC28AQ8IWP9 RNU6-847P-201ENST00000411115 108 ntBASIC1.82□□□□□ -2.12
CCDC28AQ8IWP9 AC004965.1-201ENST00000413033 213 ntBASIC1.82□□□□□ -2.12
CCDC28AQ8IWP9 HMGN2P23-201ENST00000456759 269 ntBASIC1.82□□□□□ -2.12
CCDC28AQ8IWP9 SNORD11-201ENST00000459124 84 ntBASIC1.82□□□□□ -2.12
CCDC28AQ8IWP9 AL021707.8-201ENST00000609428 183 ntBASIC1.82□□□□□ -2.12
CCDC28AQ8IWP9 AC027279.3-201ENST00000625055 122 ntBASIC1.82□□□□□ -2.12
CCDC28AQ8IWP9 SNORD3E-202ENST00000627253 216 ntBASIC1.82□□□□□ -2.12
CCDC28AQ8IWP9 AC095038.3-201ENST00000634439 195 ntBASIC1.82□□□□□ -2.12
CCDC28AQ8IWP9 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
CCDC28AQ8IWP9 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
CCDC28AQ8IWP9 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
CCDC28AQ8IWP9 snoU2-30.1-201ENST00000365012 70 ntBASIC1.81□□□□□ -2.12
CCDC28AQ8IWP9 RNU2-52P-201ENST00000410680 190 ntBASIC1.81□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 215.6 ms