Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.8□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.79□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC3.79□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC3.79□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 RNU6-813P-201ENST00000384691 107 ntBASIC3.79□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 MIR592-201ENST00000384959 97 ntBASIC3.79□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 RNU2-49P-201ENST00000410666 184 ntBASIC3.79□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.79□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 PGBD4P5-201ENST00000445958 426 ntBASIC3.79□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 AC084364.2-201ENST00000546924 395 ntBASIC3.79□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 AC107016.2-201ENST00000547968 190 ntBASIC3.79□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.79□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 U6.73-201ENST00000619194 103 ntBASIC3.79□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 Y_RNA.107-201ENST00000363190 121 ntBASIC3.78□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 SNORD24-201ENST00000383884 75 ntBASIC3.78□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 AL117342.1-201ENST00000404861 406 ntBASIC3.78□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 SNORA19.1-201ENST00000410656 129 ntBASIC3.78□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 RPL30P4-201ENST00000429309 333 ntBASIC3.78□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 RNA5SP310-201ENST00000459084 116 ntBASIC3.78□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 AC003982.1-202ENST00000469928 248 ntBASIC3.78□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 SNORA70.14-201ENST00000516205 110 ntBASIC3.78□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 RNA5SP480-201ENST00000516840 109 ntBASIC3.78□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 MIR4648-201ENST00000580107 72 ntBASIC3.78□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 AC008739.2-201ENST00000597006 317 ntBASIC3.78□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.78□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 MIR3202-2-201ENST00000635980 79 ntBASIC3.78□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC3.78□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.78□□□□□ -1.8
SENP3-EIF4A1A0A087X0R7 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.77□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 SNORA31-201ENST00000362607 130 ntBASIC3.77□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 Y_RNA.342-201ENST00000365352 113 ntBASIC3.77□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 RPS26P48-201ENST00000491713 339 ntBASIC3.77□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 RNU6-948P-201ENST00000516374 107 ntBASIC3.77□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 AC079598.5-201ENST00000547460 117 ntBASIC3.77□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.77□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.77□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 RNU6-888P-201ENST00000363010 101 ntBASIC3.76□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 RNY1P10-201ENST00000363268 113 ntBASIC3.76□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 RNU1-22P-201ENST00000363334 158 ntBASIC3.76□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 RNU6-1124P-201ENST00000384169 107 ntBASIC3.76□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 SNORD61-201ENST00000384252 73 ntBASIC3.76□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 RNU2-37P-201ENST00000410695 177 ntBASIC3.76□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 Z98742.3-201ENST00000418637 326 ntBASIC3.76□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 AL445687.1-201ENST00000439946 251 ntBASIC3.76□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 HMGN2P23-201ENST00000456759 269 ntBASIC3.76□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 RPL36AP48-201ENST00000485521 314 ntBASIC3.76□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC3.76□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 RNU2-58P-201ENST00000516403 183 ntBASIC3.76□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 SCARNA15-202ENST00000516881 127 ntBASIC3.76□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.76□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 MIR3690-201ENST00000580266 75 ntBASIC3.76□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 AP000942.3-201ENST00000603702 160 ntBASIC3.76□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 RNU6-228P-201ENST00000362700 106 ntBASIC3.75□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 RNU6-1240P-201ENST00000365155 104 ntBASIC3.75□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 Y_RNA.374-201ENST00000365606 101 ntBASIC3.75□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 MIR1294-201ENST00000408503 142 ntBASIC3.75□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 AC009969.1-201ENST00000438726 172 ntBASIC3.75□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 AC016717.1-201ENST00000448918 286 ntBASIC3.75□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 RNU6-240P-201ENST00000516098 97 ntBASIC3.75□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 RNU6-1270P-201ENST00000517128 108 ntBASIC3.75□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.74□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC3.74□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 SNORA63D-201ENST00000364359 132 ntBASIC3.74□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 Y_RNA.242-201ENST00000364473 110 ntBASIC3.74□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 RNU6-750P-201ENST00000390946 107 ntBASIC3.74□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 RNA5SP225-201ENST00000410874 135 ntBASIC3.74□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 AL159169.1-201ENST00000421119 127 ntBASIC3.74□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 AC087499.2-201ENST00000432861 149 ntBASIC3.74□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 RNU7-23P-201ENST00000459465 62 ntBASIC3.74□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 MRPS17P9-201ENST00000511924 393 ntBASIC3.74□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 AC097462.1-201ENST00000514125 324 ntBASIC3.74□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 RNY4P20-201ENST00000516678 93 ntBASIC3.74□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 RNU7-172P-201ENST00000517125 64 ntBASIC3.74□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.74□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC3.73□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.73□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 AC108206.1-201ENST00000570186 4159 ntBASIC3.73□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 SNORD31B-201ENST00000364977 69 ntBASIC3.73□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 RNU6-1235P-201ENST00000384559 107 ntBASIC3.73□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 RNU6-498P-201ENST00000459468 107 ntBASIC3.73□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 SCARNA17.1-201ENST00000516211 143 ntBASIC3.73□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 SCARNA17.2-201ENST00000516334 143 ntBASIC3.73□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 RNU6-830P-201ENST00000516353 107 ntBASIC3.73□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 MIR3117-201ENST00000584034 78 ntBASIC3.73□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 MIR4438-201ENST00000585271 93 ntBASIC3.73□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 uc_338.14-201ENST00000613162 166 ntBASIC3.73□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 SCARNA17.4-201ENST00000614296 143 ntBASIC3.73□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 AC006111.3-201ENST00000622137 383 ntBASIC3.73□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 RNU4-36P-201ENST00000364294 144 ntBASIC3.72□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 Y_RNA.265-201ENST00000364677 108 ntBASIC3.72□□□□□ -1.81
SENP3-EIF4A1A0A087X0R7 SNORD77.3-201ENST00000391113 65 ntBASIC3.72□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 170.2 ms