Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
LIME1Q9H400 AC100821.1-201ENST00000523153 2479 ntBASIC1.31□□□□□ -2.2
LIME1Q9H400 SNORD81.1-201ENST00000363064 77 ntBASIC1.31□□□□□ -2.2
LIME1Q9H400 AC117470.1-201ENST00000381974 330 ntBASIC1.31□□□□□ -2.2
LIME1Q9H400 Y_RNA.439-201ENST00000384119 94 ntBASIC1.31□□□□□ -2.2
LIME1Q9H400 RNU6-376P-201ENST00000384731 106 ntBASIC1.31□□□□□ -2.2
LIME1Q9H400 MIR520G-201ENST00000385064 90 ntBASIC1.31□□□□□ -2.2
LIME1Q9H400 RNU6-440P-201ENST00000390882 105 ntBASIC1.31□□□□□ -2.2
LIME1Q9H400 RNU6-823P-201ENST00000391042 103 ntBASIC1.31□□□□□ -2.2
LIME1Q9H400 RN7SKP200-201ENST00000410564 320 ntBASIC1.31□□□□□ -2.2
LIME1Q9H400 RNU1-98P-201ENST00000458992 160 ntBASIC1.31□□□□□ -2.2
LIME1Q9H400 RNU6-1337P-201ENST00000516525 95 ntBASIC1.31□□□□□ -2.2
LIME1Q9H400 Y_RNA.701-201ENST00000516812 110 ntBASIC1.31□□□□□ -2.2
LIME1Q9H400 Y_RNA.721-201ENST00000517207 102 ntBASIC1.31□□□□□ -2.2
LIME1Q9H400 AL358944.1-201ENST00000528537 144 ntBASIC1.31□□□□□ -2.2
LIME1Q9H400 AC011604.1-201ENST00000545978 196 ntBASIC1.31□□□□□ -2.2
LIME1Q9H400 RPL21P9-201ENST00000556149 474 ntBASIC1.31□□□□□ -2.2
LIME1Q9H400 AC136932.1-201ENST00000574771 208 ntBASIC1.31□□□□□ -2.2
LIME1Q9H400 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC1.31□□□□□ -2.2
LIME1Q9H400 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC1.31□□□□□ -2.2
LIME1Q9H400 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC1.31□□□□□ -2.2
LIME1Q9H400 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.3□□□□□ -2.2
LIME1Q9H400 MIR96-201ENST00000362288 78 ntBASIC1.3□□□□□ -2.2
LIME1Q9H400 Y_RNA.158-201ENST00000363651 101 ntBASIC1.3□□□□□ -2.2
LIME1Q9H400 Y_RNA.540-201ENST00000384638 111 ntBASIC1.3□□□□□ -2.2
LIME1Q9H400 MIR1252-201ENST00000408861 65 ntBASIC1.3□□□□□ -2.2
LIME1Q9H400 AL162725.1-201ENST00000435405 301 ntBASIC1.3□□□□□ -2.2
LIME1Q9H400 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.3□□□□□ -2.2
LIME1Q9H400 snoU13.9-201ENST00000458927 103 ntBASIC1.3□□□□□ -2.2
LIME1Q9H400 RNA5SP220-201ENST00000516298 104 ntBASIC1.3□□□□□ -2.2
LIME1Q9H400 AP002004.2-201ENST00000531656 154 ntBASIC1.3□□□□□ -2.2
LIME1Q9H400 AL162424.1-201ENST00000602325 221 ntBASIC1.3□□□□□ -2.2
LIME1Q9H400 AC136443.5-201ENST00000603741 370 ntBASIC1.3□□□□□ -2.2
LIME1Q9H400 RAC1P9-201ENST00000604990 392 ntBASIC1.3□□□□□ -2.2
LIME1Q9H400 AL353770.2-201ENST00000620024 78 ntBASIC1.3□□□□□ -2.2
LIME1Q9H400 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.3□□□□□ -2.2
LIME1Q9H400 SNORA1B-201ENST00000362535 133 ntBASIC1.29□□□□□ -2.2
LIME1Q9H400 Y_RNA.331-201ENST00000365267 102 ntBASIC1.29□□□□□ -2.2
LIME1Q9H400 RNU6-1227P-201ENST00000383981 107 ntBASIC1.29□□□□□ -2.2
LIME1Q9H400 Y_RNA.424-201ENST00000384063 103 ntBASIC1.29□□□□□ -2.2
LIME1Q9H400 MIR517C-201ENST00000385103 95 ntBASIC1.29□□□□□ -2.2
LIME1Q9H400 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.29□□□□□ -2.2
LIME1Q9H400 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.29□□□□□ -2.2
LIME1Q9H400 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC1.29□□□□□ -2.2
LIME1Q9H400 SNORA31.24-201ENST00000517232 57 ntBASIC1.29□□□□□ -2.2
LIME1Q9H400 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.29□□□□□ -2.2
LIME1Q9H400 AC124312.5-201ENST00000604451 268 ntBASIC1.29□□□□□ -2.2
LIME1Q9H400 AC004832.4-201ENST00000608952 331 ntBASIC1.29□□□□□ -2.2
LIME1Q9H400 AL513423.1-201ENST00000621695 132 ntBASIC1.29□□□□□ -2.2
LIME1Q9H400 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.29□□□□□ -2.2
LIME1Q9H400 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.28□□□□□ -2.2
LIME1Q9H400 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
LIME1Q9H400 Y_RNA.183-201ENST00000363882 113 ntBASIC1.28□□□□□ -2.2
LIME1Q9H400 Y_RNA.216-201ENST00000364205 93 ntBASIC1.28□□□□□ -2.2
LIME1Q9H400 RNY1-201ENST00000364228 113 ntBASIC1.28□□□□□ -2.2
LIME1Q9H400 Y_RNA.276-201ENST00000364732 109 ntBASIC1.28□□□□□ -2.2
LIME1Q9H400 Y_RNA.329-201ENST00000365209 107 ntBASIC1.28□□□□□ -2.2
LIME1Q9H400 Y_RNA.380-201ENST00000365663 111 ntBASIC1.28□□□□□ -2.2
LIME1Q9H400 RNU6-937P-201ENST00000384325 106 ntBASIC1.28□□□□□ -2.2
LIME1Q9H400 SNORD116-13-201ENST00000384408 92 ntBASIC1.28□□□□□ -2.2
LIME1Q9H400 AL034345.1-201ENST00000407768 123 ntBASIC1.28□□□□□ -2.2
LIME1Q9H400 AL354695.1-201ENST00000427935 228 ntBASIC1.28□□□□□ -2.2
LIME1Q9H400 AC010655.3-201ENST00000478818 450 ntBASIC1.28□□□□□ -2.2
LIME1Q9H400 OR9P1P-201ENST00000496431 281 ntBASIC1.28□□□□□ -2.2
LIME1Q9H400 RNU6-970P-201ENST00000516312 107 ntBASIC1.28□□□□□ -2.2
LIME1Q9H400 RNU6-63P-201ENST00000516690 95 ntBASIC1.28□□□□□ -2.2
LIME1Q9H400 RNU7-28P-201ENST00000516759 62 ntBASIC1.28□□□□□ -2.2
LIME1Q9H400 RNU6-1096P-201ENST00000517089 102 ntBASIC1.28□□□□□ -2.2
LIME1Q9H400 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.28□□□□□ -2.2
LIME1Q9H400 MIR4680-201ENST00000580906 66 ntBASIC1.28□□□□□ -2.2
LIME1Q9H400 MIR4300-201ENST00000581016 96 ntBASIC1.28□□□□□ -2.2
LIME1Q9H400 AC011373.1-201ENST00000607270 237 ntBASIC1.28□□□□□ -2.2
LIME1Q9H400 ICE2P2-201ENST00000483823 2787 ntBASIC1.28□□□□□ -2.2
LIME1Q9H400 Y_RNA.143-201ENST00000363520 106 ntBASIC1.27□□□□□ -2.21
LIME1Q9H400 Y_RNA.172-201ENST00000363765 102 ntBASIC1.27□□□□□ -2.21
LIME1Q9H400 Y_RNA.222-201ENST00000364264 102 ntBASIC1.27□□□□□ -2.21
LIME1Q9H400 RNU6-450P-201ENST00000364654 107 ntBASIC1.27□□□□□ -2.21
LIME1Q9H400 RNA5SP511-201ENST00000410487 115 ntBASIC1.27□□□□□ -2.21
LIME1Q9H400 AC027119.1-201ENST00000440877 241 ntBASIC1.27□□□□□ -2.21
LIME1Q9H400 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC1.27□□□□□ -2.21
LIME1Q9H400 STAG3L5P-204ENST00000443759 179 ntBASIC1.27□□□□□ -2.21
LIME1Q9H400 PGBD4P5-201ENST00000445958 426 ntBASIC1.27□□□□□ -2.21
LIME1Q9H400 RPS4XP11-201ENST00000446897 772 ntBASIC1.27□□□□□ -2.21
LIME1Q9H400 RNA5SP480-201ENST00000516840 109 ntBASIC1.27□□□□□ -2.21
LIME1Q9H400 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.27□□□□□ -2.21
LIME1Q9H400 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.27□□□□□ -2.21
LIME1Q9H400 AC113195.1-201ENST00000579952 141 ntBASIC1.27□□□□□ -2.21
LIME1Q9H400 MIR4422-201ENST00000581938 83 ntBASIC1.27□□□□□ -2.21
LIME1Q9H400 AC044792.1-201ENST00000593294 196 ntBASIC1.27□□□□□ -2.21
LIME1Q9H400 AL356055.1-201ENST00000602528 446 ntBASIC1.27□□□□□ -2.21
LIME1Q9H400 SNORA28-201ENST00000606769 126 ntBASIC1.27□□□□□ -2.21
LIME1Q9H400 AC040896.1-201ENST00000613819 479 ntBASIC1.27□□□□□ -2.21
LIME1Q9H400 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.27□□□□□ -2.21
LIME1Q9H400 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
LIME1Q9H400 RNU6-324P-201ENST00000363957 106 ntBASIC1.26□□□□□ -2.21
LIME1Q9H400 SNORD1A-201ENST00000364968 72 ntBASIC1.26□□□□□ -2.21
LIME1Q9H400 SNORA33.2-201ENST00000365413 134 ntBASIC1.26□□□□□ -2.21
LIME1Q9H400 Y_RNA.368-201ENST00000365547 113 ntBASIC1.26□□□□□ -2.21
LIME1Q9H400 Y_RNA.455-201ENST00000384230 98 ntBASIC1.26□□□□□ -2.21
LIME1Q9H400 RNU6-997P-201ENST00000384725 107 ntBASIC1.26□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 244.5 ms