Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC0.48□□□□□ -2.33
SHANK3Q9BYB0 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.47□□□□□ -2.33
SHANK3Q9BYB0 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.47□□□□□ -2.33
SHANK3Q9BYB0 Y_RNA.414-201ENST00000384011 101 ntBASIC0.47□□□□□ -2.33
SHANK3Q9BYB0 SNORD116-13-201ENST00000384408 92 ntBASIC0.47□□□□□ -2.33
SHANK3Q9BYB0 RNU6-110P-201ENST00000384508 104 ntBASIC0.47□□□□□ -2.33
SHANK3Q9BYB0 MIR181A1-201ENST00000385026 110 ntBASIC0.47□□□□□ -2.33
SHANK3Q9BYB0 MIR520G-201ENST00000385064 90 ntBASIC0.47□□□□□ -2.33
SHANK3Q9BYB0 ELOCP21-201ENST00000412558 336 ntBASIC0.47□□□□□ -2.33
SHANK3Q9BYB0 SNRPGP12-201ENST00000449481 213 ntBASIC0.47□□□□□ -2.33
SHANK3Q9BYB0 U7.7-201ENST00000459276 60 ntBASIC0.47□□□□□ -2.33
SHANK3Q9BYB0 AC091021.1-201ENST00000468051 388 ntBASIC0.47□□□□□ -2.33
SHANK3Q9BYB0 AC022493.2-201ENST00000506122 481 ntBASIC0.47□□□□□ -2.33
SHANK3Q9BYB0 RNU2-56P-201ENST00000516826 190 ntBASIC0.47□□□□□ -2.33
SHANK3Q9BYB0 MIR2355-201ENST00000517199 87 ntBASIC0.47□□□□□ -2.33
SHANK3Q9BYB0 AC022868.1-201ENST00000517767 391 ntBASIC0.47□□□□□ -2.33
SHANK3Q9BYB0 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC0.47□□□□□ -2.33
SHANK3Q9BYB0 AF250324.2-201ENST00000608299 610 ntBASIC0.47□□□□□ -2.33
SHANK3Q9BYB0 Y_RNA.135-201ENST00000363439 95 ntBASIC0.47□□□□□ -2.33
SHANK3Q9BYB0 Y_RNA.363-201ENST00000365529 113 ntBASIC0.47□□□□□ -2.33
SHANK3Q9BYB0 Y_RNA.533-201ENST00000384596 114 ntBASIC0.47□□□□□ -2.33
SHANK3Q9BYB0 RNU6-159P-201ENST00000391080 106 ntBASIC0.47□□□□□ -2.33
SHANK3Q9BYB0 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC0.47□□□□□ -2.33
SHANK3Q9BYB0 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC0.47□□□□□ -2.33
SHANK3Q9BYB0 HMGN2P26-201ENST00000463169 339 ntBASIC0.47□□□□□ -2.33
SHANK3Q9BYB0 PDCD5P2-201ENST00000507570 312 ntBASIC0.47□□□□□ -2.33
SHANK3Q9BYB0 RNU6-1114P-201ENST00000516022 107 ntBASIC0.47□□□□□ -2.33
SHANK3Q9BYB0 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC0.47□□□□□ -2.33
SHANK3Q9BYB0 AC108676.2-201ENST00000605225 163 ntBASIC0.47□□□□□ -2.33
SHANK3Q9BYB0 MIRLET7C-201ENST00000362160 84 ntBASIC0.46□□□□□ -2.34
SHANK3Q9BYB0 SNORA27.1-201ENST00000362604 124 ntBASIC0.46□□□□□ -2.34
SHANK3Q9BYB0 RNU6-95P-201ENST00000384697 107 ntBASIC0.46□□□□□ -2.34
SHANK3Q9BYB0 Y_RNA.572-201ENST00000384757 98 ntBASIC0.46□□□□□ -2.34
SHANK3Q9BYB0 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.46□□□□□ -2.34
SHANK3Q9BYB0 MRPS10P1-201ENST00000448483 130 ntBASIC0.46□□□□□ -2.34
SHANK3Q9BYB0 SUMO1P2-201ENST00000452524 304 ntBASIC0.46□□□□□ -2.34
SHANK3Q9BYB0 RNU7-21P-201ENST00000459430 62 ntBASIC0.46□□□□□ -2.34
SHANK3Q9BYB0 AC113410.1-201ENST00000505029 247 ntBASIC0.46□□□□□ -2.34
SHANK3Q9BYB0 RNU6-917P-201ENST00000516294 104 ntBASIC0.46□□□□□ -2.34
SHANK3Q9BYB0 AC093023.1-201ENST00000547375 507 ntBASIC0.46□□□□□ -2.34
SHANK3Q9BYB0 SEPT14P17-201ENST00000617978 177 ntBASIC0.46□□□□□ -2.34
SHANK3Q9BYB0 Y_RNA.2-201ENST00000362330 96 ntBASIC0.45□□□□□ -2.34
SHANK3Q9BYB0 SNORA1B-201ENST00000362535 133 ntBASIC0.45□□□□□ -2.34
SHANK3Q9BYB0 Y_RNA.38-201ENST00000362617 102 ntBASIC0.45□□□□□ -2.34
SHANK3Q9BYB0 Y_RNA.194-201ENST00000363985 102 ntBASIC0.45□□□□□ -2.34
SHANK3Q9BYB0 Y_RNA.212-201ENST00000364177 102 ntBASIC0.45□□□□□ -2.34
SHANK3Q9BYB0 RNU6-407P-201ENST00000365280 104 ntBASIC0.45□□□□□ -2.34
SHANK3Q9BYB0 MTCYBP10-201ENST00000424905 650 ntBASIC0.45□□□□□ -2.34
SHANK3Q9BYB0 AC245047.8-201ENST00000456455 284 ntBASIC0.45□□□□□ -2.34
SHANK3Q9BYB0 TPT1P7-201ENST00000458300 517 ntBASIC0.45□□□□□ -2.34
SHANK3Q9BYB0 AC100812.1-201ENST00000607622 580 ntBASIC0.45□□□□□ -2.34
SHANK3Q9BYB0 ANKRD30BP1-201ENST00000451052 2186 ntBASIC0.45□□□□□ -2.34
SHANK3Q9BYB0 AP000568.1-201ENST00000282964 442 ntBASIC0.44□□□□□ -2.34
SHANK3Q9BYB0 Y_RNA.267-201ENST00000364679 109 ntBASIC0.44□□□□□ -2.34
SHANK3Q9BYB0 RNU6-969P-201ENST00000383900 105 ntBASIC0.44□□□□□ -2.34
SHANK3Q9BYB0 RNU6-1310P-201ENST00000384153 107 ntBASIC0.44□□□□□ -2.34
SHANK3Q9BYB0 SNORA20B-201ENST00000384220 132 ntBASIC0.44□□□□□ -2.34
SHANK3Q9BYB0 RNU6-163P-201ENST00000384396 106 ntBASIC0.44□□□□□ -2.34
SHANK3Q9BYB0 RNU6-908P-201ENST00000410160 94 ntBASIC0.44□□□□□ -2.34
SHANK3Q9BYB0 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC0.44□□□□□ -2.34
SHANK3Q9BYB0 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC0.44□□□□□ -2.34
SHANK3Q9BYB0 RNU4-57P-201ENST00000515980 135 ntBASIC0.44□□□□□ -2.34
SHANK3Q9BYB0 RNU6-506P-201ENST00000516553 94 ntBASIC0.44□□□□□ -2.34
SHANK3Q9BYB0 RNU6-107P-201ENST00000516643 102 ntBASIC0.44□□□□□ -2.34
SHANK3Q9BYB0 AC091144.1-201ENST00000519573 138 ntBASIC0.44□□□□□ -2.34
SHANK3Q9BYB0 AC109810.1-201ENST00000534066 224 ntBASIC0.44□□□□□ -2.34
SHANK3Q9BYB0 AC006380.1-201ENST00000603598 186 ntBASIC0.44□□□□□ -2.34
SHANK3Q9BYB0 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC0.44□□□□□ -2.34
SHANK3Q9BYB0 SNORA12.1-201ENST00000390873 148 ntBASIC0.44□□□□□ -2.34
SHANK3Q9BYB0 EIF1P2-201ENST00000428233 350 ntBASIC0.44□□□□□ -2.34
SHANK3Q9BYB0 USP9YP16-201ENST00000430287 407 ntBASIC0.44□□□□□ -2.34
SHANK3Q9BYB0 AL157398.1-201ENST00000452981 186 ntBASIC0.44□□□□□ -2.34
SHANK3Q9BYB0 USP9YP23-201ENST00000455085 407 ntBASIC0.44□□□□□ -2.34
SHANK3Q9BYB0 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC0.44□□□□□ -2.34
SHANK3Q9BYB0 SNORA70.12-201ENST00000516084 153 ntBASIC0.44□□□□□ -2.34
SHANK3Q9BYB0 RNU1-54P-201ENST00000517181 120 ntBASIC0.44□□□□□ -2.34
SHANK3Q9BYB0 AC027419.1-201ENST00000522976 328 ntBASIC0.44□□□□□ -2.34
SHANK3Q9BYB0 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.44□□□□□ -2.34
SHANK3Q9BYB0 AC090617.3-201ENST00000573670 475 ntBASIC0.44□□□□□ -2.34
SHANK3Q9BYB0 AC005828.6-201ENST00000606610 232 ntBASIC0.44□□□□□ -2.34
SHANK3Q9BYB0 AC024614.3-201ENST00000637860 256 ntBASIC0.44□□□□□ -2.34
SHANK3Q9BYB0 Y_RNA.51-201ENST00000362725 102 ntBASIC0.43□□□□□ -2.34
SHANK3Q9BYB0 Y_RNA.405-201ENST00000383979 100 ntBASIC0.43□□□□□ -2.34
SHANK3Q9BYB0 Y_RNA.451-201ENST00000384200 100 ntBASIC0.43□□□□□ -2.34
SHANK3Q9BYB0 Y_RNA.524-201ENST00000384564 100 ntBASIC0.43□□□□□ -2.34
SHANK3Q9BYB0 Y_RNA.561-201ENST00000384694 100 ntBASIC0.43□□□□□ -2.34
SHANK3Q9BYB0 RNA5SP118-201ENST00000410385 109 ntBASIC0.43□□□□□ -2.34
SHANK3Q9BYB0 AL590632.1-201ENST00000424289 371 ntBASIC0.43□□□□□ -2.34
SHANK3Q9BYB0 AC091179.3-201ENST00000474761 144 ntBASIC0.43□□□□□ -2.34
SHANK3Q9BYB0 Y_RNA.682-201ENST00000516457 100 ntBASIC0.43□□□□□ -2.34
SHANK3Q9BYB0 RNU6-1088P-201ENST00000516850 104 ntBASIC0.43□□□□□ -2.34
SHANK3Q9BYB0 AC245505.1-201ENST00000556398 224 ntBASIC0.43□□□□□ -2.34
SHANK3Q9BYB0 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC0.43□□□□□ -2.34
SHANK3Q9BYB0 MIR4305-201ENST00000583252 102 ntBASIC0.43□□□□□ -2.34
SHANK3Q9BYB0 MIR4493-201ENST00000584016 73 ntBASIC0.43□□□□□ -2.34
SHANK3Q9BYB0 AC005899.2-201ENST00000584353 90 ntBASIC0.43□□□□□ -2.34
SHANK3Q9BYB0 AC080078.2-201ENST00000603766 501 ntBASIC0.43□□□□□ -2.34
SHANK3Q9BYB0 AC093913.1-201ENST00000614178 329 ntBASIC0.43□□□□□ -2.34
SHANK3Q9BYB0 MIR6079-201ENST00000635807 62 ntBASIC0.43□□□□□ -2.34
SHANK3Q9BYB0 U6.115-201ENST00000636045 103 ntBASIC0.43□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 170.4 ms