Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 U6.108-201ENST00000637764 58 ntBASIC1.73□□□□□ -2.13
MSH3P20585 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.73□□□□□ -2.13
MSH3P20585 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.73□□□□□ -2.13
MSH3P20585 SNORD48-201ENST00000364953 64 ntBASIC1.72□□□□□ -2.13
MSH3P20585 RNU6-196P-201ENST00000384315 107 ntBASIC1.72□□□□□ -2.13
MSH3P20585 MIR515-2-201ENST00000384883 83 ntBASIC1.72□□□□□ -2.13
MSH3P20585 MIR515-1-201ENST00000384884 83 ntBASIC1.72□□□□□ -2.13
MSH3P20585 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC1.72□□□□□ -2.13
MSH3P20585 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.72□□□□□ -2.13
MSH3P20585 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.72□□□□□ -2.13
MSH3P20585 RNU6-1338P-201ENST00000516328 91 ntBASIC1.72□□□□□ -2.13
MSH3P20585 RNU2-31P-201ENST00000516954 155 ntBASIC1.72□□□□□ -2.13
MSH3P20585 SUB1P4-201ENST00000566062 339 ntBASIC1.72□□□□□ -2.13
MSH3P20585 MIR3145-201ENST00000580727 82 ntBASIC1.72□□□□□ -2.13
MSH3P20585 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.72□□□□□ -2.13
MSH3P20585 U4.1-201ENST00000620349 87 ntBASIC1.72□□□□□ -2.13
MSH3P20585 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.71□□□□□ -2.14
MSH3P20585 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.71□□□□□ -2.14
MSH3P20585 RNU4-80P-201ENST00000363200 141 ntBASIC1.71□□□□□ -2.14
MSH3P20585 RNU6-117P-201ENST00000365415 107 ntBASIC1.71□□□□□ -2.14
MSH3P20585 RNU6-574P-201ENST00000384265 107 ntBASIC1.71□□□□□ -2.14
MSH3P20585 EBAG9P1-201ENST00000418955 543 ntBASIC1.71□□□□□ -2.14
MSH3P20585 MTCO1P5-201ENST00000433573 344 ntBASIC1.71□□□□□ -2.14
MSH3P20585 HSPE1P13-201ENST00000451143 297 ntBASIC1.71□□□□□ -2.14
MSH3P20585 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC1.71□□□□□ -2.14
MSH3P20585 AC097462.1-201ENST00000514125 324 ntBASIC1.71□□□□□ -2.14
MSH3P20585 Y_RNA.668-201ENST00000516233 93 ntBASIC1.71□□□□□ -2.14
MSH3P20585 RNU7-99P-201ENST00000516271 62 ntBASIC1.71□□□□□ -2.14
MSH3P20585 AC024995.1-201ENST00000523014 93 ntBASIC1.71□□□□□ -2.14
MSH3P20585 DEFB108E-201ENST00000524692 240 ntBASIC1.71□□□□□ -2.14
MSH3P20585 MIR5094-201ENST00000578766 85 ntBASIC1.71□□□□□ -2.14
MSH3P20585 MIR8081-201ENST00000611533 95 ntBASIC1.71□□□□□ -2.14
MSH3P20585 AL359075.3-201ENST00000613288 217 ntBASIC1.71□□□□□ -2.14
MSH3P20585 U1.36-201ENST00000620684 176 ntBASIC1.71□□□□□ -2.14
MSH3P20585 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.71□□□□□ -2.14
MSH3P20585 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
MSH3P20585 Y_RNA.237-201ENST00000364439 102 ntBASIC1.7□□□□□ -2.14
MSH3P20585 Y_RNA.452-201ENST00000384202 108 ntBASIC1.7□□□□□ -2.14
MSH3P20585 SNORA53-201ENST00000391141 249 ntBASIC1.7□□□□□ -2.14
MSH3P20585 RNA5SP212-201ENST00000391223 107 ntBASIC1.7□□□□□ -2.14
MSH3P20585 RNU6-710P-201ENST00000410424 105 ntBASIC1.7□□□□□ -2.14
MSH3P20585 RNU6-1186P-201ENST00000410429 97 ntBASIC1.7□□□□□ -2.14
MSH3P20585 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.7□□□□□ -2.14
MSH3P20585 AC024067.1-201ENST00000426199 223 ntBASIC1.7□□□□□ -2.14
MSH3P20585 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.7□□□□□ -2.14
MSH3P20585 RNU6-191P-201ENST00000516295 94 ntBASIC1.7□□□□□ -2.14
MSH3P20585 SNORA25.15-201ENST00000516487 89 ntBASIC1.7□□□□□ -2.14
MSH3P20585 RNU6-1337P-201ENST00000516525 95 ntBASIC1.7□□□□□ -2.14
MSH3P20585 RNU1-142P-201ENST00000516682 145 ntBASIC1.7□□□□□ -2.14
MSH3P20585 RNU7-172P-201ENST00000517125 64 ntBASIC1.7□□□□□ -2.14
MSH3P20585 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.7□□□□□ -2.14
MSH3P20585 AC084364.2-201ENST00000546924 395 ntBASIC1.7□□□□□ -2.14
MSH3P20585 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.7□□□□□ -2.14
MSH3P20585 MIR502-201ENST00000606349 86 ntBASIC1.7□□□□□ -2.14
MSH3P20585 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.7□□□□□ -2.14
MSH3P20585 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
MSH3P20585 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.7□□□□□ -2.14
MSH3P20585 AL391987.6-201ENST00000305671 199 ntBASIC1.69□□□□□ -2.14
MSH3P20585 MIR335-201ENST00000362173 94 ntBASIC1.69□□□□□ -2.14
MSH3P20585 Y_RNA.172-201ENST00000363765 102 ntBASIC1.69□□□□□ -2.14
MSH3P20585 Y_RNA.193-201ENST00000363979 102 ntBASIC1.69□□□□□ -2.14
MSH3P20585 RNU6-1019P-201ENST00000364424 107 ntBASIC1.69□□□□□ -2.14
MSH3P20585 Y_RNA.288-201ENST00000364854 92 ntBASIC1.69□□□□□ -2.14
MSH3P20585 AC010154.1-201ENST00000425857 269 ntBASIC1.69□□□□□ -2.14
MSH3P20585 AC245047.4-201ENST00000433189 144 ntBASIC1.69□□□□□ -2.14
MSH3P20585 AL135790.2-201ENST00000437701 267 ntBASIC1.69□□□□□ -2.14
MSH3P20585 SNORD127-201ENST00000458892 86 ntBASIC1.69□□□□□ -2.14
MSH3P20585 RPS26P45-201ENST00000471748 340 ntBASIC1.69□□□□□ -2.14
MSH3P20585 AL163195.1-201ENST00000496941 348 ntBASIC1.69□□□□□ -2.14
MSH3P20585 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.69□□□□□ -2.14
MSH3P20585 SERF1AP1-201ENST00000514575 187 ntBASIC1.69□□□□□ -2.14
MSH3P20585 RNU6-250P-201ENST00000516958 103 ntBASIC1.69□□□□□ -2.14
MSH3P20585 SCARNA24.2-201ENST00000516968 130 ntBASIC1.69□□□□□ -2.14
MSH3P20585 RNU6-548P-201ENST00000517083 115 ntBASIC1.69□□□□□ -2.14
MSH3P20585 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC1.69□□□□□ -2.14
MSH3P20585 RPL21P9-201ENST00000556149 474 ntBASIC1.69□□□□□ -2.14
MSH3P20585 AC022254.1-201ENST00000567857 235 ntBASIC1.69□□□□□ -2.14
MSH3P20585 MIR3149-201ENST00000584629 83 ntBASIC1.69□□□□□ -2.14
MSH3P20585 AC069114.2-201ENST00000604699 304 ntBASIC1.69□□□□□ -2.14
MSH3P20585 NAA50-211ENST00000630058 177 ntTSL 5 BASIC1.69□□□□□ -2.14
MSH3P20585 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC1.68□□□□□ -2.14
MSH3P20585 Y_RNA.310-201ENST00000365063 113 ntBASIC1.68□□□□□ -2.14
MSH3P20585 Y_RNA.368-201ENST00000365547 113 ntBASIC1.68□□□□□ -2.14
MSH3P20585 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.68□□□□□ -2.14
MSH3P20585 RNA5SP323-201ENST00000391094 133 ntBASIC1.68□□□□□ -2.14
MSH3P20585 RNU6-1248P-201ENST00000391096 64 ntBASIC1.68□□□□□ -2.14
MSH3P20585 AL627390.1-201ENST00000396055 340 ntBASIC1.68□□□□□ -2.14
MSH3P20585 RNU6-855P-201ENST00000410395 104 ntBASIC1.68□□□□□ -2.14
MSH3P20585 MTND4LP30-201ENST00000454092 297 ntBASIC1.68□□□□□ -2.14
MSH3P20585 AC010409.1-201ENST00000487382 476 ntBASIC1.68□□□□□ -2.14
MSH3P20585 AC091959.1-201ENST00000495857 238 ntBASIC1.68□□□□□ -2.14
MSH3P20585 RNU6-63P-201ENST00000516690 95 ntBASIC1.68□□□□□ -2.14
MSH3P20585 AC037487.3-201ENST00000606668 112 ntBASIC1.68□□□□□ -2.14
MSH3P20585 MIR7843-201ENST00000622274 79 ntBASIC1.68□□□□□ -2.14
MSH3P20585 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.68□□□□□ -2.14
MSH3P20585 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.68□□□□□ -2.14
MSH3P20585 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.68□□□□□ -2.14
MSH3P20585 SNORD116-13-201ENST00000384408 92 ntBASIC1.67□□□□□ -2.14
MSH3P20585 RNA5SP511-201ENST00000410487 115 ntBASIC1.67□□□□□ -2.14
MSH3P20585 CYCSP49-201ENST00000420810 319 ntBASIC1.67□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 186.5 ms