Protein–RNA interactions for Protein: P08247

SYP, Synaptophysin, humanhuman

Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYPP08247 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.9□□□□□ -1.95
SYPP08247 Y_RNA.91-201ENST00000363042 107 ntBASIC2.9□□□□□ -1.95
SYPP08247 Y_RNA.634-201ENST00000364811 113 ntBASIC2.9□□□□□ -1.95
SYPP08247 MIR1253-201ENST00000408273 105 ntBASIC2.9□□□□□ -1.95
SYPP08247 RNU6ATAC40P-201ENST00000408580 137 ntBASIC2.9□□□□□ -1.95
SYPP08247 RNU2-70P-201ENST00000410718 179 ntBASIC2.9□□□□□ -1.95
SYPP08247 AC023449.1-201ENST00000454464 154 ntBASIC2.9□□□□□ -1.95
SYPP08247 RPS29P21-201ENST00000496272 170 ntBASIC2.9□□□□□ -1.95
SYPP08247 RN7SKP179-201ENST00000516126 217 ntBASIC2.9□□□□□ -1.95
SYPP08247 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.9□□□□□ -1.95
SYPP08247 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC2.9□□□□□ -1.95
SYPP08247 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
SYPP08247 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
SYPP08247 RNU1-96P-201ENST00000364163 162 ntBASIC2.89□□□□□ -1.95
SYPP08247 Y_RNA.525-201ENST00000384570 113 ntBASIC2.89□□□□□ -1.95
SYPP08247 RNU2-63P-201ENST00000410792 194 ntBASIC2.89□□□□□ -1.95
SYPP08247 HMGN2P34-201ENST00000437647 269 ntBASIC2.89□□□□□ -1.95
SYPP08247 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.89□□□□□ -1.95
SYPP08247 Y_RNA.712-201ENST00000517011 92 ntBASIC2.89□□□□□ -1.95
SYPP08247 RNU6-1096P-201ENST00000517089 102 ntBASIC2.89□□□□□ -1.95
SYPP08247 AC090049.2-201ENST00000550377 109 ntBASIC2.89□□□□□ -1.95
SYPP08247 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC2.89□□□□□ -1.95
SYPP08247 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
SYPP08247 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
SYPP08247 Y_RNA.294-201ENST00000364916 102 ntBASIC2.88□□□□□ -1.95
SYPP08247 RNU6-1138P-201ENST00000365359 106 ntBASIC2.88□□□□□ -1.95
SYPP08247 RNU6-220P-201ENST00000390919 107 ntBASIC2.88□□□□□ -1.95
SYPP08247 AL513477.1-202ENST00000417061 214 ntBASIC2.88□□□□□ -1.95
SYPP08247 AC108938.1-201ENST00000451204 136 ntBASIC2.88□□□□□ -1.95
SYPP08247 RNU7-149P-201ENST00000516739 59 ntBASIC2.88□□□□□ -1.95
SYPP08247 AC079600.2-201ENST00000550076 130 ntBASIC2.88□□□□□ -1.95
SYPP08247 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC2.88□□□□□ -1.95
SYPP08247 AL355297.2-201ENST00000604792 129 ntBASIC2.88□□□□□ -1.95
SYPP08247 AC004832.5-201ENST00000608677 401 ntBASIC2.88□□□□□ -1.95
SYPP08247 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC2.88□□□□□ -1.95
SYPP08247 AC008264.2-201ENST00000610193 3731 ntBASIC2.88□□□□□ -1.95
SYPP08247 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC2.87□□□□□ -1.95
SYPP08247 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
SYPP08247 U8.1-201ENST00000362843 134 ntBASIC2.87□□□□□ -1.95
SYPP08247 Y_RNA.120-201ENST00000363304 110 ntBASIC2.87□□□□□ -1.95
SYPP08247 Y_RNA.280-201ENST00000364765 112 ntBASIC2.87□□□□□ -1.95
SYPP08247 SNORD21-201ENST00000383953 95 ntBASIC2.87□□□□□ -1.95
SYPP08247 MIR592-201ENST00000384959 97 ntBASIC2.87□□□□□ -1.95
SYPP08247 MIR520G-201ENST00000385064 90 ntBASIC2.87□□□□□ -1.95
SYPP08247 AL158823.1-201ENST00000418441 478 ntBASIC2.87□□□□□ -1.95
SYPP08247 AC244505.4-201ENST00000434905 287 ntBASIC2.87□□□□□ -1.95
SYPP08247 SSXP5-201ENST00000443473 287 ntBASIC2.87□□□□□ -1.95
SYPP08247 SNORD109B-201ENST00000458961 67 ntBASIC2.87□□□□□ -1.95
SYPP08247 SNORD109A-201ENST00000459128 67 ntBASIC2.87□□□□□ -1.95
SYPP08247 AC018868.1-201ENST00000491307 315 ntBASIC2.87□□□□□ -1.95
SYPP08247 AC011406.1-201ENST00000512440 370 ntBASIC2.87□□□□□ -1.95
SYPP08247 RNU6-1146P-201ENST00000516282 102 ntBASIC2.87□□□□□ -1.95
SYPP08247 RNU7-128P-201ENST00000517247 62 ntBASIC2.87□□□□□ -1.95
SYPP08247 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC2.87□□□□□ -1.95
SYPP08247 Y_RNA.757-201ENST00000578934 114 ntBASIC2.87□□□□□ -1.95
SYPP08247 AC073413.2-201ENST00000604332 360 ntBASIC2.87□□□□□ -1.95
SYPP08247 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.86□□□□□ -1.95
SYPP08247 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.86□□□□□ -1.95
SYPP08247 snoU2-30.2-201ENST00000362805 70 ntBASIC2.86□□□□□ -1.95
SYPP08247 RNU6-1056P-201ENST00000383996 107 ntBASIC2.86□□□□□ -1.95
SYPP08247 MIR561-201ENST00000385216 97 ntBASIC2.86□□□□□ -1.95
SYPP08247 RNA5SP274-201ENST00000410484 108 ntBASIC2.86□□□□□ -1.95
SYPP08247 AC003685.2-201ENST00000422795 395 ntBASIC2.86□□□□□ -1.95
SYPP08247 RPL39P40-201ENST00000445481 146 ntBASIC2.86□□□□□ -1.95
SYPP08247 TRBV12-1-201ENST00000479785 344 ntBASIC2.86□□□□□ -1.95
SYPP08247 OR9P1P-201ENST00000496431 281 ntBASIC2.86□□□□□ -1.95
SYPP08247 MIR4662B-201ENST00000579498 81 ntBASIC2.86□□□□□ -1.95
SYPP08247 AC131055.1-201ENST00000584626 316 ntBASIC2.86□□□□□ -1.95
SYPP08247 Pinc.1-201ENST00000616452 154 ntBASIC2.86□□□□□ -1.95
SYPP08247 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC2.86□□□□□ -1.95
SYPP08247 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
SYPP08247 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
SYPP08247 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC2.85□□□□□ -1.95
SYPP08247 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.85□□□□□ -1.95
SYPP08247 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.85□□□□□ -1.95
SYPP08247 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
SYPP08247 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
SYPP08247 AC073325.2-201ENST00000339545 159 ntBASIC2.85□□□□□ -1.95
SYPP08247 RNU6-235P-201ENST00000362644 107 ntBASIC2.85□□□□□ -1.95
SYPP08247 SNORA26-201ENST00000391286 122 ntBASIC2.85□□□□□ -1.95
SYPP08247 RNU6-1186P-201ENST00000410429 97 ntBASIC2.85□□□□□ -1.95
SYPP08247 RNU7-99P-201ENST00000516271 62 ntBASIC2.85□□□□□ -1.95
SYPP08247 RNA5SP76-201ENST00000516277 87 ntBASIC2.85□□□□□ -1.95
SYPP08247 Y_RNA.692-201ENST00000516627 105 ntBASIC2.85□□□□□ -1.95
SYPP08247 RNU6-126P-201ENST00000516685 103 ntBASIC2.85□□□□□ -1.95
SYPP08247 RNU6-667P-201ENST00000517186 102 ntBASIC2.85□□□□□ -1.95
SYPP08247 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC2.85□□□□□ -1.95
SYPP08247 AC091178.2-201ENST00000584401 117 ntBASIC2.85□□□□□ -1.95
SYPP08247 JPX_2.1-201ENST00000614161 69 ntBASIC2.85□□□□□ -1.95
SYPP08247 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
SYPP08247 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
SYPP08247 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.85□□□□□ -1.95
SYPP08247 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC2.84□□□□□ -1.95
SYPP08247 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
SYPP08247 Y_RNA.486-201ENST00000384398 107 ntBASIC2.84□□□□□ -1.95
SYPP08247 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.84□□□□□ -1.95
SYPP08247 MIR1261-201ENST00000408659 82 ntBASIC2.84□□□□□ -1.95
SYPP08247 RNU2-52P-201ENST00000410680 190 ntBASIC2.84□□□□□ -1.95
SYPP08247 AL353689.1-201ENST00000438895 199 ntBASIC2.84□□□□□ -1.95
SYPP08247 NDUFA4P2-201ENST00000489989 244 ntBASIC2.84□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 243.6 ms