Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 U3.15-201ENST00000365398 212 ntBASIC4.06□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 SNORA26-201ENST00000391286 122 ntBASIC4.06□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 MIR1263-201ENST00000408324 86 ntBASIC4.06□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 MIR1183-201ENST00000408856 89 ntBASIC4.06□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 AC006539.3-201ENST00000454258 129 ntBASIC4.06□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 AC023449.1-201ENST00000454464 154 ntBASIC4.06□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 snoU13.14-201ENST00000459372 104 ntBASIC4.06□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 RPS29P20-201ENST00000489592 171 ntBASIC4.06□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 AC062037.1-201ENST00000605302 128 ntBASIC4.06□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 MIR1245B-201ENST00000636115 69 ntBASIC4.06□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 AC073325.2-201ENST00000339545 159 ntBASIC4.05□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 Y_RNA.52-201ENST00000362760 96 ntBASIC4.05□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 DYNLT3P1-201ENST00000378574 347 ntBASIC4.05□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 Y_RNA.528-201ENST00000384575 108 ntBASIC4.05□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 MIR570-201ENST00000384917 97 ntBASIC4.05□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 MIR586-201ENST00000385035 97 ntBASIC4.05□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 MIR1289-2-201ENST00000408360 111 ntBASIC4.05□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 MIR1185-2-201ENST00000408687 86 ntBASIC4.05□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 EEF1A1P41-201ENST00000414667 207 ntBASIC4.05□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 AL161651.1-201ENST00000440882 223 ntBASIC4.05□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 AC145146.1-201ENST00000496370 254 ntBASIC4.05□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC4.05□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 RPL17P51-201ENST00000605218 238 ntBASIC4.05□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 RNU6-91P-201ENST00000607774 107 ntBASIC4.05□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 AC093831.2-201ENST00000624393 3427 ntBASIC4.05□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 Y_RNA.49-201ENST00000362714 112 ntBASIC4.04□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 RNU6-1010P-201ENST00000362757 107 ntBASIC4.04□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 RNU6-1305P-201ENST00000364353 104 ntBASIC4.04□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 Y_RNA.634-201ENST00000364811 113 ntBASIC4.04□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 MIR624-201ENST00000385217 97 ntBASIC4.04□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 MIR891A-201ENST00000401237 79 ntBASIC4.04□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 RNA5SP136-201ENST00000410906 107 ntBASIC4.04□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 RNA5SP127-201ENST00000411051 133 ntBASIC4.04□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 AC022018.1-201ENST00000430685 241 ntBASIC4.04□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 AC105272.1-201ENST00000438604 198 ntBASIC4.04□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 AC083906.5-201ENST00000503722 328 ntBASIC4.04□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 RNA5SP281-201ENST00000516504 135 ntBASIC4.04□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 AC105245.1-201ENST00000581934 244 ntBASIC4.04□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 RPS15AP11-201ENST00000594193 385 ntBASIC4.04□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC4.04□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 AC015726.2-201ENST00000620112 122 ntBASIC4.04□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC4.04□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC4.03□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 SNORA9.2-201ENST00000365361 133 ntBASIC4.03□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 RPS3P1-201ENST00000456781 192 ntBASIC4.03□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 RPS26P55-201ENST00000471178 356 ntBASIC4.03□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 RNU6-126P-201ENST00000516685 103 ntBASIC4.03□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 SNORD53-201ENST00000579969 78 ntBASIC4.03□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC4.02□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 RNU6-600P-201ENST00000362524 99 ntBASIC4.02□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 SNORA27.1-201ENST00000362604 124 ntBASIC4.02□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 Y_RNA.91-201ENST00000363042 107 ntBASIC4.02□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 RNU6-529P-201ENST00000363383 104 ntBASIC4.02□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 Y_RNA.220-201ENST00000364244 109 ntBASIC4.02□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 RNU6-820P-201ENST00000384273 107 ntBASIC4.02□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 SNORA51.10-201ENST00000384418 136 ntBASIC4.02□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 RNU6-748P-201ENST00000384648 107 ntBASIC4.02□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 AL355796.1-201ENST00000406706 323 ntBASIC4.02□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 RPL32P35-201ENST00000415214 394 ntBASIC4.02□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 AF228730.3-201ENST00000436691 102 ntBASIC4.02□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 HMGN2P20-201ENST00000437531 273 ntBASIC4.02□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 SNRPGP5-201ENST00000456003 220 ntBASIC4.02□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 SNORD77.4-201ENST00000516158 81 ntBASIC4.02□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 RN7SKP43-201ENST00000516173 320 ntBASIC4.02□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 AC068657.1-201ENST00000520807 306 ntBASIC4.02□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC4.02□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 AL442128.1-201ENST00000615151 90 ntBASIC4.02□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 AC000403.1-201ENST00000613696 3585 ntBASIC4.02□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC4.02□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC4.01□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC4.01□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 RNU6-1014P-201ENST00000383940 103 ntBASIC4.01□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 SNORA46-201ENST00000384762 135 ntBASIC4.01□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 AL441985.1-201ENST00000457727 251 ntBASIC4.01□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 RPL23AP62-201ENST00000463396 453 ntBASIC4.01□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 RPS29P21-201ENST00000496272 170 ntBASIC4.01□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 RN7SKP12-201ENST00000516275 143 ntBASIC4.01□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 IGKV1-22-201ENST00000524313 326 ntBASIC4.01□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 MIR4781-201ENST00000585250 76 ntBASIC4.01□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 AC110741.2-201ENST00000605278 268 ntBASIC4.01□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 uc_338.4-201ENST00000616635 176 ntBASIC4.01□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 AP003122.5-201ENST00000527668 3766 ntBASIC4.01□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 AC026241.1-201ENST00000517873 2142 ntBASIC4.01□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC4.01□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC4□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 SNORA7.4-201ENST00000384249 137 ntBASIC4□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 SNORD15B-201ENST00000384714 146 ntBASIC4□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 RNU6-440P-201ENST00000390882 105 ntBASIC4□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 MIR2681-201ENST00000581814 105 ntBASIC4□□□□□ -1.77
SENP3-EIF4A1A0A087X0R7 RNU6-94P-201ENST00000607728 107 ntBASIC4□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 221.9 ms