Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 SNORD114-6-201ENST00000364393 72 ntBASIC1.82□□□□□ -2.12
SIX2Q9NPC8 RNU6-1164P-201ENST00000364428 107 ntBASIC1.82□□□□□ -2.12
SIX2Q9NPC8 RNU6-160P-201ENST00000384591 107 ntBASIC1.82□□□□□ -2.12
SIX2Q9NPC8 MIR583-201ENST00000384846 75 ntBASIC1.82□□□□□ -2.12
SIX2Q9NPC8 MIR568-201ENST00000385036 95 ntBASIC1.82□□□□□ -2.12
SIX2Q9NPC8 AL390729.2-201ENST00000416137 156 ntBASIC1.82□□□□□ -2.12
SIX2Q9NPC8 RPL21P38-201ENST00000418090 167 ntBASIC1.82□□□□□ -2.12
SIX2Q9NPC8 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.82□□□□□ -2.12
SIX2Q9NPC8 RNU6-966P-201ENST00000516479 104 ntBASIC1.82□□□□□ -2.12
SIX2Q9NPC8 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.82□□□□□ -2.12
SIX2Q9NPC8 RNU6-250P-201ENST00000516958 103 ntBASIC1.82□□□□□ -2.12
SIX2Q9NPC8 RNU2-12P-201ENST00000517216 168 ntBASIC1.82□□□□□ -2.12
SIX2Q9NPC8 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.82□□□□□ -2.12
SIX2Q9NPC8 AP003733.2-201ENST00000529409 171 ntBASIC1.82□□□□□ -2.12
SIX2Q9NPC8 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.82□□□□□ -2.12
SIX2Q9NPC8 AC011373.1-201ENST00000607270 237 ntBASIC1.82□□□□□ -2.12
SIX2Q9NPC8 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.82□□□□□ -2.12
SIX2Q9NPC8 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.82□□□□□ -2.12
SIX2Q9NPC8 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
SIX2Q9NPC8 AL356292.1-201ENST00000283110 373 ntBASIC1.81□□□□□ -2.12
SIX2Q9NPC8 SNORD113-8-201ENST00000363497 74 ntBASIC1.81□□□□□ -2.12
SIX2Q9NPC8 RNU6-713P-201ENST00000384761 107 ntBASIC1.81□□□□□ -2.12
SIX2Q9NPC8 RNU4-30P-201ENST00000410245 143 ntBASIC1.81□□□□□ -2.12
SIX2Q9NPC8 RNU2-54P-201ENST00000410299 190 ntBASIC1.81□□□□□ -2.12
SIX2Q9NPC8 RNU6-1199P-201ENST00000411249 104 ntBASIC1.81□□□□□ -2.12
SIX2Q9NPC8 AC016909.1-201ENST00000415916 166 ntBASIC1.81□□□□□ -2.12
SIX2Q9NPC8 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC1.81□□□□□ -2.12
SIX2Q9NPC8 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.81□□□□□ -2.12
SIX2Q9NPC8 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.81□□□□□ -2.12
SIX2Q9NPC8 AC011753.1-201ENST00000451001 220 ntBASIC1.81□□□□□ -2.12
SIX2Q9NPC8 RNU1-131P-201ENST00000458943 161 ntBASIC1.81□□□□□ -2.12
SIX2Q9NPC8 AC098869.1-201ENST00000481627 292 ntBASIC1.81□□□□□ -2.12
SIX2Q9NPC8 RNU7-110P-201ENST00000516891 62 ntBASIC1.81□□□□□ -2.12
SIX2Q9NPC8 AC025647.1-201ENST00000517879 253 ntBASIC1.81□□□□□ -2.12
SIX2Q9NPC8 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC1.81□□□□□ -2.12
SIX2Q9NPC8 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC1.81□□□□□ -2.12
SIX2Q9NPC8 AC012493.3-201ENST00000604494 112 ntBASIC1.81□□□□□ -2.12
SIX2Q9NPC8 MIR8081-201ENST00000611533 95 ntBASIC1.81□□□□□ -2.12
SIX2Q9NPC8 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC1.81□□□□□ -2.12
SIX2Q9NPC8 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
SIX2Q9NPC8 snoU2_19.2-201ENST00000363024 80 ntBASIC1.8□□□□□ -2.12
SIX2Q9NPC8 SNORD115-3-201ENST00000363100 82 ntBASIC1.8□□□□□ -2.12
SIX2Q9NPC8 SNORA3A-201ENST00000364113 130 ntBASIC1.8□□□□□ -2.12
SIX2Q9NPC8 Y_RNA.446-201ENST00000384178 104 ntBASIC1.8□□□□□ -2.12
SIX2Q9NPC8 MIR29C-201ENST00000385231 88 ntBASIC1.8□□□□□ -2.12
SIX2Q9NPC8 Y_RNA.581-201ENST00000391017 97 ntBASIC1.8□□□□□ -2.12
SIX2Q9NPC8 AC008134.1-201ENST00000420943 193 ntBASIC1.8□□□□□ -2.12
SIX2Q9NPC8 CBX3P4-201ENST00000538909 354 ntBASIC1.8□□□□□ -2.12
SIX2Q9NPC8 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.8□□□□□ -2.12
SIX2Q9NPC8 MIR4255-201ENST00000579351 72 ntBASIC1.8□□□□□ -2.12
SIX2Q9NPC8 MIR3945-201ENST00000581853 98 ntBASIC1.8□□□□□ -2.12
SIX2Q9NPC8 SNORD113-5-201ENST00000607261 78 ntBASIC1.8□□□□□ -2.12
SIX2Q9NPC8 AL590240.4-201ENST00000616908 390 ntBASIC1.8□□□□□ -2.12
SIX2Q9NPC8 MIR8062-201ENST00000621515 85 ntBASIC1.8□□□□□ -2.12
SIX2Q9NPC8 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
SIX2Q9NPC8 RNA5SP493-201ENST00000364115 91 ntBASIC1.79□□□□□ -2.12
SIX2Q9NPC8 Y_RNA.243-201ENST00000364481 109 ntBASIC1.79□□□□□ -2.12
SIX2Q9NPC8 Y_RNA.286-201ENST00000364813 102 ntBASIC1.79□□□□□ -2.12
SIX2Q9NPC8 Y_RNA.331-201ENST00000365267 102 ntBASIC1.79□□□□□ -2.12
SIX2Q9NPC8 RNU6-102P-201ENST00000384485 104 ntBASIC1.79□□□□□ -2.12
SIX2Q9NPC8 RNU6-21P-201ENST00000384710 107 ntBASIC1.79□□□□□ -2.12
SIX2Q9NPC8 MIR215-201ENST00000384858 110 ntBASIC1.79□□□□□ -2.12
SIX2Q9NPC8 Y_RNA.602-201ENST00000410535 92 ntBASIC1.79□□□□□ -2.12
SIX2Q9NPC8 RPL23AP36-201ENST00000413895 458 ntBASIC1.79□□□□□ -2.12
SIX2Q9NPC8 AC060773.1-201ENST00000421698 310 ntBASIC1.79□□□□□ -2.12
SIX2Q9NPC8 HMGN2P3-201ENST00000433603 273 ntBASIC1.79□□□□□ -2.12
SIX2Q9NPC8 HMGN2P5-201ENST00000436882 273 ntBASIC1.79□□□□□ -2.12
SIX2Q9NPC8 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.79□□□□□ -2.12
SIX2Q9NPC8 AC005042.3-201ENST00000453230 174 ntBASIC1.79□□□□□ -2.12
SIX2Q9NPC8 RPL23AP3-201ENST00000453844 468 ntBASIC1.79□□□□□ -2.12
SIX2Q9NPC8 HSPE1P25-201ENST00000455484 251 ntBASIC1.79□□□□□ -2.12
SIX2Q9NPC8 AL139109.1-201ENST00000455491 297 ntBASIC1.79□□□□□ -2.12
SIX2Q9NPC8 HMGB3P17-201ENST00000504195 649 ntBASIC1.79□□□□□ -2.12
SIX2Q9NPC8 SEPT14P8-201ENST00000508026 178 ntBASIC1.79□□□□□ -2.12
SIX2Q9NPC8 RNU6-496P-201ENST00000516145 99 ntBASIC1.79□□□□□ -2.12
SIX2Q9NPC8 RNU6-155P-201ENST00000516347 100 ntBASIC1.79□□□□□ -2.12
SIX2Q9NPC8 MIR3169-201ENST00000578032 83 ntBASIC1.79□□□□□ -2.12
SIX2Q9NPC8 MIR3684-201ENST00000579779 74 ntBASIC1.79□□□□□ -2.12
SIX2Q9NPC8 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC1.79□□□□□ -2.12
SIX2Q9NPC8 AC005828.6-201ENST00000606610 232 ntBASIC1.79□□□□□ -2.12
SIX2Q9NPC8 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.79□□□□□ -2.12
SIX2Q9NPC8 AC006001.4-201ENST00000622243 395 ntBASIC1.79□□□□□ -2.12
SIX2Q9NPC8 AC127459.3-201ENST00000624328 466 ntBASIC1.79□□□□□ -2.12
SIX2Q9NPC8 U6.115-201ENST00000636045 103 ntBASIC1.79□□□□□ -2.12
SIX2Q9NPC8 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
SIX2Q9NPC8 AL159152.1-201ENST00000635019 2587 ntBASIC1.78□□□□□ -2.12
SIX2Q9NPC8 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.78□□□□□ -2.12
SIX2Q9NPC8 SNORD81.1-201ENST00000363064 77 ntBASIC1.78□□□□□ -2.12
SIX2Q9NPC8 SNORD115-30-201ENST00000364117 82 ntBASIC1.78□□□□□ -2.12
SIX2Q9NPC8 RNU6-1240P-201ENST00000365155 104 ntBASIC1.78□□□□□ -2.12
SIX2Q9NPC8 Y_RNA.361-201ENST00000365515 120 ntBASIC1.78□□□□□ -2.12
SIX2Q9NPC8 HMGN2P39-201ENST00000398005 273 ntBASIC1.78□□□□□ -2.12
SIX2Q9NPC8 RNA5SP270-201ENST00000411361 118 ntBASIC1.78□□□□□ -2.12
SIX2Q9NPC8 BX510359.4-201ENST00000423750 193 ntBASIC1.78□□□□□ -2.12
SIX2Q9NPC8 AL353689.1-201ENST00000438895 199 ntBASIC1.78□□□□□ -2.12
SIX2Q9NPC8 IPO7P1-201ENST00000442031 636 ntBASIC1.78□□□□□ -2.12
SIX2Q9NPC8 AL161670.1-201ENST00000554348 137 ntBASIC1.78□□□□□ -2.12
SIX2Q9NPC8 AC006380.1-201ENST00000603598 186 ntBASIC1.78□□□□□ -2.12
SIX2Q9NPC8 AC245884.12-201ENST00000615364 59 ntBASIC1.78□□□□□ -2.12
SIX2Q9NPC8 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 167.7 ms