Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.47□□□□□ -2.17
CDX1P47902 SNORD116.3-201ENST00000517176 78 ntBASIC1.47□□□□□ -2.17
CDX1P47902 RNU7-128P-201ENST00000517247 62 ntBASIC1.47□□□□□ -2.17
CDX1P47902 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC1.47□□□□□ -2.17
CDX1P47902 AC093027.1-201ENST00000546698 429 ntBASIC1.47□□□□□ -2.17
CDX1P47902 AC015712.3-201ENST00000559380 164 ntBASIC1.47□□□□□ -2.17
CDX1P47902 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.47□□□□□ -2.17
CDX1P47902 MIR4422-201ENST00000581938 83 ntBASIC1.47□□□□□ -2.17
CDX1P47902 AC073413.2-201ENST00000604332 360 ntBASIC1.47□□□□□ -2.17
CDX1P47902 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.47□□□□□ -2.17
CDX1P47902 AC004467.1-201ENST00000615678 330 ntBASIC1.47□□□□□ -2.17
CDX1P47902 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.47□□□□□ -2.17
CDX1P47902 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.47□□□□□ -2.17
CDX1P47902 SNORA27.1-201ENST00000362604 124 ntBASIC1.46□□□□□ -2.18
CDX1P47902 Y_RNA.58-201ENST00000362807 102 ntBASIC1.46□□□□□ -2.18
CDX1P47902 Y_RNA.154-201ENST00000363624 102 ntBASIC1.46□□□□□ -2.18
CDX1P47902 RNU6-454P-201ENST00000364292 107 ntBASIC1.46□□□□□ -2.18
CDX1P47902 SNORD48-201ENST00000364953 64 ntBASIC1.46□□□□□ -2.18
CDX1P47902 RNA5SP363-201ENST00000365072 115 ntBASIC1.46□□□□□ -2.18
CDX1P47902 RNY3P1-201ENST00000365085 102 ntBASIC1.46□□□□□ -2.18
CDX1P47902 RNY3-201ENST00000365484 102 ntBASIC1.46□□□□□ -2.18
CDX1P47902 RNU6-440P-201ENST00000390882 105 ntBASIC1.46□□□□□ -2.18
CDX1P47902 SNORA40.18-201ENST00000391200 128 ntBASIC1.46□□□□□ -2.18
CDX1P47902 AC004965.1-201ENST00000413033 213 ntBASIC1.46□□□□□ -2.18
CDX1P47902 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC1.46□□□□□ -2.18
CDX1P47902 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.46□□□□□ -2.18
CDX1P47902 AC079140.2-201ENST00000506193 142 ntBASIC1.46□□□□□ -2.18
CDX1P47902 AC097462.1-201ENST00000514125 324 ntBASIC1.46□□□□□ -2.18
CDX1P47902 Y_RNA.661-201ENST00000516003 99 ntBASIC1.46□□□□□ -2.18
CDX1P47902 RNU6-548P-201ENST00000517083 115 ntBASIC1.46□□□□□ -2.18
CDX1P47902 AP002001.1-203ENST00000534002 267 ntBASIC1.46□□□□□ -2.18
CDX1P47902 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC1.46□□□□□ -2.18
CDX1P47902 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.46□□□□□ -2.18
CDX1P47902 WWP1P1-201ENST00000466609 2769 ntBASIC1.46□□□□□ -2.18
CDX1P47902 AC018630.2-201ENST00000534866 2403 ntBASIC1.46□□□□□ -2.18
CDX1P47902 RNU1-22P-201ENST00000363334 158 ntBASIC1.45□□□□□ -2.18
CDX1P47902 RNU6-961P-201ENST00000363893 105 ntBASIC1.45□□□□□ -2.18
CDX1P47902 SNORD1A-201ENST00000364968 72 ntBASIC1.45□□□□□ -2.18
CDX1P47902 RNY3P4-201ENST00000384428 101 ntBASIC1.45□□□□□ -2.18
CDX1P47902 SNORD78.2-201ENST00000391076 69 ntBASIC1.45□□□□□ -2.18
CDX1P47902 AC018865.2-201ENST00000423631 129 ntBASIC1.45□□□□□ -2.18
CDX1P47902 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.45□□□□□ -2.18
CDX1P47902 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC1.45□□□□□ -2.18
CDX1P47902 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.45□□□□□ -2.18
CDX1P47902 AC108210.2-201ENST00000503681 201 ntBASIC1.45□□□□□ -2.18
CDX1P47902 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.45□□□□□ -2.18
CDX1P47902 MTND3P22-201ENST00000510932 243 ntBASIC1.45□□□□□ -2.18
CDX1P47902 SNORA31.10-201ENST00000516482 106 ntBASIC1.45□□□□□ -2.18
CDX1P47902 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.45□□□□□ -2.18
CDX1P47902 AC023442.1-201ENST00000531247 422 ntBASIC1.45□□□□□ -2.18
CDX1P47902 AC006380.1-201ENST00000603598 186 ntBASIC1.45□□□□□ -2.18
CDX1P47902 MIR6845-201ENST00000613182 61 ntBASIC1.45□□□□□ -2.18
CDX1P47902 Y_RNA.463-201ENST00000384271 102 ntBASIC1.44□□□□□ -2.18
CDX1P47902 RNU6-376P-201ENST00000384731 106 ntBASIC1.44□□□□□ -2.18
CDX1P47902 RNU6-1031P-201ENST00000384773 107 ntBASIC1.44□□□□□ -2.18
CDX1P47902 MT-TD-201ENST00000387419 68 ntBASIC1.44□□□□□ -2.18
CDX1P47902 AL034345.1-201ENST00000407768 123 ntBASIC1.44□□□□□ -2.18
CDX1P47902 AL161935.2-201ENST00000414627 60 ntBASIC1.44□□□□□ -2.18
CDX1P47902 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.44□□□□□ -2.18
CDX1P47902 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC1.44□□□□□ -2.18
CDX1P47902 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1.44□□□□□ -2.18
CDX1P47902 SUMO1P2-201ENST00000452524 304 ntBASIC1.44□□□□□ -2.18
CDX1P47902 Y_RNA.675-201ENST00000516389 149 ntBASIC1.44□□□□□ -2.18
CDX1P47902 RNU6-911P-201ENST00000516523 104 ntBASIC1.44□□□□□ -2.18
CDX1P47902 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.44□□□□□ -2.18
CDX1P47902 AC006600.1-201ENST00000572529 153 ntBASIC1.44□□□□□ -2.18
CDX1P47902 VN1R91P-201ENST00000594377 169 ntBASIC1.44□□□□□ -2.18
CDX1P47902 AL021879.1-201ENST00000611756 288 ntBASIC1.44□□□□□ -2.18
CDX1P47902 MIR6079-201ENST00000635807 62 ntBASIC1.44□□□□□ -2.18
CDX1P47902 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
CDX1P47902 SNORD33-201ENST00000362761 85 ntBASIC1.43□□□□□ -2.18
CDX1P47902 RNA5SP259-201ENST00000365541 109 ntBASIC1.43□□□□□ -2.18
CDX1P47902 MIR194-1-201ENST00000384892 85 ntBASIC1.43□□□□□ -2.18
CDX1P47902 MIR873-201ENST00000401120 77 ntBASIC1.43□□□□□ -2.18
CDX1P47902 RNU2-20P-201ENST00000410425 191 ntBASIC1.43□□□□□ -2.18
CDX1P47902 MTND4LP11-201ENST00000422184 280 ntBASIC1.43□□□□□ -2.18
CDX1P47902 RNU7-152P-201ENST00000458982 64 ntBASIC1.43□□□□□ -2.18
CDX1P47902 RPS26P55-201ENST00000471178 356 ntBASIC1.43□□□□□ -2.18
CDX1P47902 RNU6-237P-201ENST00000515985 71 ntBASIC1.43□□□□□ -2.18
CDX1P47902 RNU6-1278P-201ENST00000516130 107 ntBASIC1.43□□□□□ -2.18
CDX1P47902 MIR3937-201ENST00000580135 106 ntBASIC1.43□□□□□ -2.18
CDX1P47902 MIR4659A-201ENST00000580269 81 ntBASIC1.43□□□□□ -2.18
CDX1P47902 MIR4795-201ENST00000584182 89 ntBASIC1.43□□□□□ -2.18
CDX1P47902 SNRPGP19-201ENST00000603826 189 ntBASIC1.43□□□□□ -2.18
CDX1P47902 AP001485.1-201ENST00000604799 199 ntBASIC1.43□□□□□ -2.18
CDX1P47902 AC021506.2-201ENST00000612354 169 ntBASIC1.43□□□□□ -2.18
CDX1P47902 AC011476.5-201ENST00000615594 130 ntBASIC1.43□□□□□ -2.18
CDX1P47902 AC127459.3-201ENST00000624328 466 ntBASIC1.43□□□□□ -2.18
CDX1P47902 AC138305.3-201ENST00000624988 240 ntBASIC1.43□□□□□ -2.18
CDX1P47902 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
CDX1P47902 ZNF72P-201ENST00000425869 1908 ntBASIC1.42□□□□□ -2.18
CDX1P47902 RNU4-73P-201ENST00000363164 141 ntBASIC1.42□□□□□ -2.18
CDX1P47902 RNU6-626P-201ENST00000363354 107 ntBASIC1.42□□□□□ -2.18
CDX1P47902 Y_RNA.243-201ENST00000364481 109 ntBASIC1.42□□□□□ -2.18
CDX1P47902 SNORA16.1-201ENST00000364597 132 ntBASIC1.42□□□□□ -2.18
CDX1P47902 Y_RNA.267-201ENST00000364679 109 ntBASIC1.42□□□□□ -2.18
CDX1P47902 MIR513A1-201ENST00000385138 129 ntBASIC1.42□□□□□ -2.18
CDX1P47902 MRPL35P1-201ENST00000404272 572 ntBASIC1.42□□□□□ -2.18
CDX1P47902 AC019176.1-201ENST00000518519 225 ntBASIC1.42□□□□□ -2.18
CDX1P47902 AC015688.6-201ENST00000577737 104 ntBASIC1.42□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 172.1 ms