Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 FCF1P4-201ENST00000448326 183 ntBASIC1.69□□□□□ -2.14
NKX3-1Q99801 AC074290.1-201ENST00000448883 135 ntBASIC1.69□□□□□ -2.14
NKX3-1Q99801 ATP5J2P3-201ENST00000451550 258 ntBASIC1.69□□□□□ -2.14
NKX3-1Q99801 RPL23AP3-201ENST00000453844 468 ntBASIC1.69□□□□□ -2.14
NKX3-1Q99801 snoU13.15-201ENST00000459407 104 ntBASIC1.69□□□□□ -2.14
NKX3-1Q99801 RN7SL274P-201ENST00000492268 272 ntBASIC1.69□□□□□ -2.14
NKX3-1Q99801 RNU6-988P-201ENST00000519081 107 ntBASIC1.69□□□□□ -2.14
NKX3-1Q99801 AC023442.1-201ENST00000531247 422 ntBASIC1.69□□□□□ -2.14
NKX3-1Q99801 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.69□□□□□ -2.14
NKX3-1Q99801 MIR5094-201ENST00000578766 85 ntBASIC1.69□□□□□ -2.14
NKX3-1Q99801 MIR3935-201ENST00000583472 104 ntBASIC1.69□□□□□ -2.14
NKX3-1Q99801 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.69□□□□□ -2.14
NKX3-1Q99801 PART1_1.1-201ENST00000611761 217 ntBASIC1.69□□□□□ -2.14
NKX3-1Q99801 AC004467.1-201ENST00000615678 330 ntBASIC1.69□□□□□ -2.14
NKX3-1Q99801 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.69□□□□□ -2.14
NKX3-1Q99801 MIR3674-201ENST00000636576 68 ntBASIC1.69□□□□□ -2.14
NKX3-1Q99801 MIR219B-201ENST00000637023 88 ntBASIC1.69□□□□□ -2.14
NKX3-1Q99801 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC1.69□□□□□ -2.14
NKX3-1Q99801 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.69□□□□□ -2.14
NKX3-1Q99801 SNORD114-1-201ENST00000362705 72 ntBASIC1.68□□□□□ -2.14
NKX3-1Q99801 MIR676-201ENST00000390702 67 ntBASIC1.68□□□□□ -2.14
NKX3-1Q99801 RNA5SP467-201ENST00000391274 118 ntBASIC1.68□□□□□ -2.14
NKX3-1Q99801 RNU2-2P-201ENST00000410396 191 ntBASIC1.68□□□□□ -2.14
NKX3-1Q99801 AC003989.2-201ENST00000440224 169 ntBASIC1.68□□□□□ -2.14
NKX3-1Q99801 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC1.68□□□□□ -2.14
NKX3-1Q99801 SNORD65B-201ENST00000459126 73 ntBASIC1.68□□□□□ -2.14
NKX3-1Q99801 SUMO2P18-201ENST00000518873 252 ntBASIC1.68□□□□□ -2.14
NKX3-1Q99801 GNAI2P1-201ENST00000541815 315 ntBASIC1.68□□□□□ -2.14
NKX3-1Q99801 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC1.68□□□□□ -2.14
NKX3-1Q99801 AC005786.1-201ENST00000588553 154 ntBASIC1.68□□□□□ -2.14
NKX3-1Q99801 AC016925.2-201ENST00000605108 242 ntBASIC1.68□□□□□ -2.14
NKX3-1Q99801 AC040896.1-201ENST00000613819 479 ntBASIC1.68□□□□□ -2.14
NKX3-1Q99801 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.68□□□□□ -2.14
NKX3-1Q99801 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.68□□□□□ -2.14
NKX3-1Q99801 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
NKX3-1Q99801 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
NKX3-1Q99801 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.68□□□□□ -2.14
NKX3-1Q99801 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
NKX3-1Q99801 MIR410-201ENST00000362222 80 ntBASIC1.67□□□□□ -2.14
NKX3-1Q99801 RNU6-1240P-201ENST00000365155 104 ntBASIC1.67□□□□□ -2.14
NKX3-1Q99801 Y_RNA.424-201ENST00000384063 103 ntBASIC1.67□□□□□ -2.14
NKX3-1Q99801 SNORA48.1-201ENST00000390879 135 ntBASIC1.67□□□□□ -2.14
NKX3-1Q99801 RNU6-823P-201ENST00000391042 103 ntBASIC1.67□□□□□ -2.14
NKX3-1Q99801 AL078595.1-201ENST00000404458 226 ntBASIC1.67□□□□□ -2.14
NKX3-1Q99801 AL355796.1-201ENST00000406706 323 ntBASIC1.67□□□□□ -2.14
NKX3-1Q99801 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.67□□□□□ -2.14
NKX3-1Q99801 MIR1289-2-201ENST00000408360 111 ntBASIC1.67□□□□□ -2.14
NKX3-1Q99801 RNA5SP475-201ENST00000410568 110 ntBASIC1.67□□□□□ -2.14
NKX3-1Q99801 SDAD1P3-201ENST00000427380 333 ntBASIC1.67□□□□□ -2.14
NKX3-1Q99801 TOMM22P2-201ENST00000430735 237 ntBASIC1.67□□□□□ -2.14
NKX3-1Q99801 AL353689.1-201ENST00000438895 199 ntBASIC1.67□□□□□ -2.14
NKX3-1Q99801 RNU6-475P-201ENST00000516073 104 ntBASIC1.67□□□□□ -2.14
NKX3-1Q99801 RPS29P30-201ENST00000600975 111 ntBASIC1.67□□□□□ -2.14
NKX3-1Q99801 AC124312.5-201ENST00000604451 268 ntBASIC1.67□□□□□ -2.14
NKX3-1Q99801 AC012493.3-201ENST00000604494 112 ntBASIC1.67□□□□□ -2.14
NKX3-1Q99801 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.67□□□□□ -2.14
NKX3-1Q99801 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
NKX3-1Q99801 snoU2-30.2-201ENST00000362805 70 ntBASIC1.66□□□□□ -2.14
NKX3-1Q99801 RNU1-96P-201ENST00000364163 162 ntBASIC1.66□□□□□ -2.14
NKX3-1Q99801 Y_RNA.471-201ENST00000384312 102 ntBASIC1.66□□□□□ -2.14
NKX3-1Q99801 Y_RNA.527-201ENST00000384573 102 ntBASIC1.66□□□□□ -2.14
NKX3-1Q99801 MRPL35P1-201ENST00000404272 572 ntBASIC1.66□□□□□ -2.14
NKX3-1Q99801 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
NKX3-1Q99801 MTND2P29-201ENST00000438595 412 ntBASIC1.66□□□□□ -2.14
NKX3-1Q99801 RPEP5-201ENST00000441137 268 ntBASIC1.66□□□□□ -2.14
NKX3-1Q99801 AC093852.1-201ENST00000503587 266 ntBASIC1.66□□□□□ -2.14
NKX3-1Q99801 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.66□□□□□ -2.14
NKX3-1Q99801 AP003072.1-201ENST00000531740 145 ntBASIC1.66□□□□□ -2.14
NKX3-1Q99801 SUB1P4-201ENST00000566062 339 ntBASIC1.66□□□□□ -2.14
NKX3-1Q99801 MIR4680-201ENST00000580906 66 ntBASIC1.66□□□□□ -2.14
NKX3-1Q99801 AL138825.1-201ENST00000618587 192 ntBASIC1.66□□□□□ -2.14
NKX3-1Q99801 U6.115-201ENST00000636045 103 ntBASIC1.66□□□□□ -2.14
NKX3-1Q99801 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.65□□□□□ -2.14
NKX3-1Q99801 Y_RNA.202-201ENST00000364083 110 ntBASIC1.65□□□□□ -2.15
NKX3-1Q99801 Y_RNA.389-201ENST00000383924 113 ntBASIC1.65□□□□□ -2.15
NKX3-1Q99801 SNORA20B-201ENST00000384220 132 ntBASIC1.65□□□□□ -2.15
NKX3-1Q99801 SUMO2P12-201ENST00000405924 140 ntBASIC1.65□□□□□ -2.15
NKX3-1Q99801 MIR1253-201ENST00000408273 105 ntBASIC1.65□□□□□ -2.15
NKX3-1Q99801 RNA5SP489-201ENST00000410986 109 ntBASIC1.65□□□□□ -2.15
NKX3-1Q99801 RNU6-1199P-201ENST00000411249 104 ntBASIC1.65□□□□□ -2.15
NKX3-1Q99801 AL158823.1-201ENST00000418441 478 ntBASIC1.65□□□□□ -2.15
NKX3-1Q99801 AC008134.1-201ENST00000420943 193 ntBASIC1.65□□□□□ -2.15
NKX3-1Q99801 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC1.65□□□□□ -2.15
NKX3-1Q99801 AC010655.3-201ENST00000478818 450 ntBASIC1.65□□□□□ -2.15
NKX3-1Q99801 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.65□□□□□ -2.15
NKX3-1Q99801 RNU6-397P-201ENST00000516226 104 ntBASIC1.65□□□□□ -2.15
NKX3-1Q99801 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC1.65□□□□□ -2.15
NKX3-1Q99801 AC023157.2-201ENST00000540596 141 ntBASIC1.65□□□□□ -2.15
NKX3-1Q99801 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC1.65□□□□□ -2.15
NKX3-1Q99801 AL390123.1-201ENST00000603216 237 ntBASIC1.65□□□□□ -2.15
NKX3-1Q99801 AL121655.1-201ENST00000605811 308 ntBASIC1.65□□□□□ -2.15
NKX3-1Q99801 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.65□□□□□ -2.15
NKX3-1Q99801 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC1.65□□□□□ -2.15
NKX3-1Q99801 AC010205.1-201ENST00000616668 449 ntBASIC1.65□□□□□ -2.15
NKX3-1Q99801 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.65□□□□□ -2.15
NKX3-1Q99801 U6.108-201ENST00000637764 58 ntBASIC1.65□□□□□ -2.15
NKX3-1Q99801 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.65□□□□□ -2.15
NKX3-1Q99801 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.15
NKX3-1Q99801 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC1.65□□□□□ -2.15
NKX3-1Q99801 Y_RNA.143-201ENST00000363520 106 ntBASIC1.64□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 176.1 ms