Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 RNA5SP181-201ENST00000410246 98 ntBASIC2.4□□□□□ -2.03
PTCHD3Q3KNS1 RNU6-847P-201ENST00000411115 108 ntBASIC2.4□□□□□ -2.03
PTCHD3Q3KNS1 MTCO1P5-201ENST00000433573 344 ntBASIC2.4□□□□□ -2.03
PTCHD3Q3KNS1 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.4□□□□□ -2.03
PTCHD3Q3KNS1 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC2.4□□□□□ -2.03
PTCHD3Q3KNS1 AC245102.2-201ENST00000448956 180 ntBASIC2.4□□□□□ -2.03
PTCHD3Q3KNS1 RPL23AP3-201ENST00000453844 468 ntBASIC2.4□□□□□ -2.03
PTCHD3Q3KNS1 RNU1-131P-201ENST00000458943 161 ntBASIC2.4□□□□□ -2.03
PTCHD3Q3KNS1 RNU6-856P-201ENST00000516959 98 ntBASIC2.4□□□□□ -2.03
PTCHD3Q3KNS1 SCARNA24.2-201ENST00000516968 130 ntBASIC2.4□□□□□ -2.03
PTCHD3Q3KNS1 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC2.4□□□□□ -2.03
PTCHD3Q3KNS1 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC2.4□□□□□ -2.03
PTCHD3Q3KNS1 AC026271.5-201ENST00000577873 130 ntBASIC2.4□□□□□ -2.03
PTCHD3Q3KNS1 BX284668.6-201ENST00000606899 438 ntBASIC2.4□□□□□ -2.03
PTCHD3Q3KNS1 U2.14-201ENST00000615943 113 ntBASIC2.4□□□□□ -2.03
PTCHD3Q3KNS1 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC2.4□□□□□ -2.03
PTCHD3Q3KNS1 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.4□□□□□ -2.03
PTCHD3Q3KNS1 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
PTCHD3Q3KNS1 UBE2WP1-201ENST00000362030 340 ntBASIC2.39□□□□□ -2.03
PTCHD3Q3KNS1 SNORA25.1-201ENST00000362326 128 ntBASIC2.39□□□□□ -2.03
PTCHD3Q3KNS1 SNORA20.1-201ENST00000364790 130 ntBASIC2.39□□□□□ -2.03
PTCHD3Q3KNS1 RNU6-1240P-201ENST00000365155 104 ntBASIC2.39□□□□□ -2.03
PTCHD3Q3KNS1 Y_RNA.329-201ENST00000365209 107 ntBASIC2.39□□□□□ -2.03
PTCHD3Q3KNS1 RNU6-514P-201ENST00000384208 107 ntBASIC2.39□□□□□ -2.03
PTCHD3Q3KNS1 SNORD14D-201ENST00000384390 87 ntBASIC2.39□□□□□ -2.03
PTCHD3Q3KNS1 MIR518C-201ENST00000384822 101 ntBASIC2.39□□□□□ -2.03
PTCHD3Q3KNS1 RNU6-710P-201ENST00000410424 105 ntBASIC2.39□□□□□ -2.03
PTCHD3Q3KNS1 SNORD65B-201ENST00000459126 73 ntBASIC2.39□□□□□ -2.03
PTCHD3Q3KNS1 TRBV12-1-201ENST00000479785 344 ntBASIC2.39□□□□□ -2.03
PTCHD3Q3KNS1 Y_RNA.680-201ENST00000516441 93 ntBASIC2.39□□□□□ -2.03
PTCHD3Q3KNS1 SNORA27.4-201ENST00000516650 95 ntBASIC2.39□□□□□ -2.03
PTCHD3Q3KNS1 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.39□□□□□ -2.03
PTCHD3Q3KNS1 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC2.39□□□□□ -2.03
PTCHD3Q3KNS1 U4.3-201ENST00000621047 82 ntBASIC2.39□□□□□ -2.03
PTCHD3Q3KNS1 FO624990.1-201ENST00000636373 85 ntBASIC2.39□□□□□ -2.03
PTCHD3Q3KNS1 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.39□□□□□ -2.03
PTCHD3Q3KNS1 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
PTCHD3Q3KNS1 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.38□□□□□ -2.03
PTCHD3Q3KNS1 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
PTCHD3Q3KNS1 RNA5SP289-201ENST00000362332 137 ntBASIC2.38□□□□□ -2.03
PTCHD3Q3KNS1 Y_RNA.44-201ENST00000362676 108 ntBASIC2.38□□□□□ -2.03
PTCHD3Q3KNS1 RNU6-271P-201ENST00000363858 105 ntBASIC2.38□□□□□ -2.03
PTCHD3Q3KNS1 RNU6-324P-201ENST00000363957 106 ntBASIC2.38□□□□□ -2.03
PTCHD3Q3KNS1 SNORA67.4-201ENST00000384688 142 ntBASIC2.38□□□□□ -2.03
PTCHD3Q3KNS1 RNU2-61P-201ENST00000411069 191 ntBASIC2.38□□□□□ -2.03
PTCHD3Q3KNS1 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.38□□□□□ -2.03
PTCHD3Q3KNS1 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC2.38□□□□□ -2.03
PTCHD3Q3KNS1 MRPS10P1-201ENST00000448483 130 ntBASIC2.38□□□□□ -2.03
PTCHD3Q3KNS1 RNU6-794P-201ENST00000517261 64 ntBASIC2.38□□□□□ -2.03
PTCHD3Q3KNS1 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.38□□□□□ -2.03
PTCHD3Q3KNS1 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.38□□□□□ -2.03
PTCHD3Q3KNS1 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.38□□□□□ -2.03
PTCHD3Q3KNS1 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.38□□□□□ -2.03
PTCHD3Q3KNS1 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.38□□□□□ -2.03
PTCHD3Q3KNS1 RNU1-148P-201ENST00000384472 162 ntBASIC2.37□□□□□ -2.03
PTCHD3Q3KNS1 MIR873-201ENST00000401120 77 ntBASIC2.37□□□□□ -2.03
PTCHD3Q3KNS1 AL603910.2-201ENST00000407268 136 ntBASIC2.37□□□□□ -2.03
PTCHD3Q3KNS1 MIR1262-201ENST00000408276 93 ntBASIC2.37□□□□□ -2.03
PTCHD3Q3KNS1 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC2.37□□□□□ -2.03
PTCHD3Q3KNS1 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.37□□□□□ -2.03
PTCHD3Q3KNS1 AL353689.1-201ENST00000438895 199 ntBASIC2.37□□□□□ -2.03
PTCHD3Q3KNS1 AC091959.1-201ENST00000495857 238 ntBASIC2.37□□□□□ -2.03
PTCHD3Q3KNS1 RNU6-191P-201ENST00000516295 94 ntBASIC2.37□□□□□ -2.03
PTCHD3Q3KNS1 SUMO2P18-201ENST00000518873 252 ntBASIC2.37□□□□□ -2.03
PTCHD3Q3KNS1 AL512605.2-201ENST00000592972 256 ntBASIC2.37□□□□□ -2.03
PTCHD3Q3KNS1 DEFB117-201ENST00000602356 141 ntBASIC2.37□□□□□ -2.03
PTCHD3Q3KNS1 CTSLP2-204ENST00000629029 392 ntBASIC2.37□□□□□ -2.03
PTCHD3Q3KNS1 ZNF271P-202ENST00000465539 1970 ntBASIC2.36□□□□□ -2.03
PTCHD3Q3KNS1 MIR6073-201ENST00000352083 89 ntBASIC2.36□□□□□ -2.03
PTCHD3Q3KNS1 SNORD114-30-201ENST00000364448 72 ntBASIC2.36□□□□□ -2.03
PTCHD3Q3KNS1 RNU1-138P-201ENST00000384093 164 ntBASIC2.36□□□□□ -2.03
PTCHD3Q3KNS1 SNORA20B-201ENST00000384220 132 ntBASIC2.36□□□□□ -2.03
PTCHD3Q3KNS1 RNU6-160P-201ENST00000384591 107 ntBASIC2.36□□□□□ -2.03
PTCHD3Q3KNS1 AL359511.1-201ENST00000402970 211 ntBASIC2.36□□□□□ -2.03
PTCHD3Q3KNS1 AL355796.1-201ENST00000406706 323 ntBASIC2.36□□□□□ -2.03
PTCHD3Q3KNS1 AC016909.1-201ENST00000415916 166 ntBASIC2.36□□□□□ -2.03
PTCHD3Q3KNS1 OOSP1P1-201ENST00000423265 274 ntBASIC2.36□□□□□ -2.03
PTCHD3Q3KNS1 CR769767.1-201ENST00000436337 346 ntBASIC2.36□□□□□ -2.03
PTCHD3Q3KNS1 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
PTCHD3Q3KNS1 Y_RNA.673-201ENST00000516306 88 ntBASIC2.36□□□□□ -2.03
PTCHD3Q3KNS1 RNA5SP137-201ENST00000516833 135 ntBASIC2.36□□□□□ -2.03
PTCHD3Q3KNS1 RNU1-104P-201ENST00000517280 175 ntBASIC2.36□□□□□ -2.03
PTCHD3Q3KNS1 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.36□□□□□ -2.03
PTCHD3Q3KNS1 MIR4446-201ENST00000578505 67 ntBASIC2.36□□□□□ -2.03
PTCHD3Q3KNS1 U2.15-201ENST00000611544 191 ntBASIC2.36□□□□□ -2.03
PTCHD3Q3KNS1 U2.16-201ENST00000613119 191 ntBASIC2.36□□□□□ -2.03
PTCHD3Q3KNS1 U2.12-201ENST00000613778 191 ntBASIC2.36□□□□□ -2.03
PTCHD3Q3KNS1 U2.20-201ENST00000613956 192 ntBASIC2.36□□□□□ -2.03
PTCHD3Q3KNS1 U2.9-201ENST00000615427 191 ntBASIC2.36□□□□□ -2.03
PTCHD3Q3KNS1 U2.11-201ENST00000616345 191 ntBASIC2.36□□□□□ -2.03
PTCHD3Q3KNS1 U2.2-201ENST00000616535 191 ntBASIC2.36□□□□□ -2.03
PTCHD3Q3KNS1 U2.3-201ENST00000617785 191 ntBASIC2.36□□□□□ -2.03
PTCHD3Q3KNS1 U2.19-201ENST00000618602 191 ntBASIC2.36□□□□□ -2.03
PTCHD3Q3KNS1 RNU2-1-201ENST00000618664 191 ntBASIC2.36□□□□□ -2.03
PTCHD3Q3KNS1 AC141273.2-201ENST00000618989 130 ntBASIC2.36□□□□□ -2.03
PTCHD3Q3KNS1 U2.6-201ENST00000619225 191 ntBASIC2.36□□□□□ -2.03
PTCHD3Q3KNS1 U2.5-201ENST00000619465 191 ntBASIC2.36□□□□□ -2.03
PTCHD3Q3KNS1 U2.10-201ENST00000620268 191 ntBASIC2.36□□□□□ -2.03
PTCHD3Q3KNS1 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.36□□□□□ -2.03
PTCHD3Q3KNS1 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.35□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 193 ms